New records of Ornithodoros turicata (Ixodida: Argasidae) in rural and urban sites in the Mexican states of Aguascalientes and Zacatecas indicate the potential for tick-borne relapsing fever.

Soft ticks from the Ornithodoros genus are vectors of relapsing fever (RF) spirochetes around the world. In Mexico, they were originally described in the 19th century. However, few recent surveillance studies have been conducted in Mexico, and regions where RF spirochetes circulate remain vague. Here, the presence of soft ticks in populated areas was assessed in two sites from the Mexican states of Aguascalientes and Zacatecas. Argasidae ticks were collected, identified by morphology and mitochondrial 16S rDNA gene sequencing, and tested for RF borreliae. The specimens in both sites were identified as Ornithodoros turicata but no RF spirochetes were detected. These findings emphasize the need to update the distribution of these ticks in multiple regions of Mexico and to determine the circulation of RF borreliosis in humans and domestic animals.

Distribution of CRISPR-Cas systems in the Burkholderiaceae family and its biological implications.

CRISPR-Cas systems are composed of repeated sequences separated by non-repeated sequences that are near genes coding for Cas proteins, which are involved in the function of these systems. Their function has been mostly related to "genetic immunity" against foreign genetic material, among other roles. Interest in them increased after their use in genetic manipulation was uncovered and surveys to find and classify them have been done in several bacterial groups. To determine the presence of these genetic elements in the Burkholderiaceae family members, a bioinformatic approach was followed. Attention in this family comes as it is formed by a great diversity of microorganisms that include opportunistic and true pathogens, and symbiotic and saprophytic organisms, among others. Results show that, in contrast to other bacterial groups, only 8.4% of family members harbor complete CRISPR-Cas systems and the rest either do not have one or have remains or sections of one. Analyses of the spacer sequences indicated that most of them have identity to sections of the same genomes they were found, while a few had identities with either plasmids or phages. The genus with the higher proportion of self-directed spacers is Ralstonia, and their possible roles are discussed. Most of the systems (60%) belong to the class I subtype I-E and a few to subtypes I-C (13.3%), I-F (18.3%), II-C (5%), IV-A (1.7%) and V-C (1.7%). To the best of our knowledge, this is the first study to uncover the CRISPR-Cas system for the whole Burkholderiaceae family.

Bioactive compounds in tomato (Solanum lycopersicum) variety saladette and their relationship with soil mineral content.

The purpose of this study was to determine the relationship between the mineral composition of soils and the bioactive compound content present in tomatoes grown in three regions of Mexico: the state of San Luis Potosí and Tultitlán and Cuautitlán Izcalli from the State of México: Total phenolic compounds, lycopene, and rutin were higher in the Tultitlán tomatoes and were associated with the thallium and magnesium content in the soil. Chlorogenic acid and quercetin in the fruit from C.IZC were associated with molybdenum and nickel found in the soil. A principal component analysis showed that cupper, iron, sodium, manganese, and lead in the soil had a relationship with the antioxidant activity (AA), resveratrol, and naringin in the fruit from SLP. In the soil from TUL, a relationship between thallium with lycopene and rutin with magnesium was found. Some elements in the soil were related to the bioactivities of the fruit.

Evolutionary and food supply implications of ongoing maize domestication by Mexican campesinos.

Maize evolution under domestication is a process that continues today. Case studies suggest that Mexican smallholder family farmers, known as campesinos, contribute importantly to this, but their significance has not been explicitly quantified and analysed as a whole. Here, we examine the evolutionary and food security implications of the scale and scope under which campesinos produce maize. We gathered official municipal-level data on maize production under rainfed conditions and identified campesino agriculture as occurring in municipalities with average yields of less than or equal to 3 t ha-1 Environmental conditions vary widely in those municipalities and are associated with a great diversity of maize races, representing 85.3% of native maize samples collected in the country. We estimate that in those municipalities, around 1.38 × 1011 genetically different individual plants are subjected to evolution under domestication each season. This implies that 5.24 × 108 mother plants contribute to the next generation with their standing genetic diversity and rare alleles. Such a large breeding population size also increases the total number of adaptive mutations that may appear and be selected for. We also estimate that campesino agriculture could potentially feed around 54.7 million people in Mexico. These analyses provide insights about the contributions of smallholder agriculture around the world.

The Mating System of the Wild-to-Domesticated Complex of Gossypium hirsutum L. Is Mixed.

The domestication syndrome of many plants includes changes in their mating systems. The evolution of the latter is shaped by ecological and genetic factors that are particular to an area. Thus, the reproductive biology of wild relatives must be studied in their natural distribution to understand the mating system of a crop species as a whole. Gossypium hirsutum (upland cotton) includes both domesticated varieties and wild populations of the same species. Most studies on mating systems describe cultivated cotton as self-pollinated, while studies on pollen dispersal report outcrossing; however, the mating system of upland cotton has not been described as mixed and little is known about its wild relatives. In this study we selected two wild metapopulations for comparison with domesticated plants and one metapopulation with evidence of recent gene flow between wild relatives and the crop to evaluate the mating system of cotton's wild-to-domesticated complex. Using classic reproductive biology methods, our data demonstrate that upland cotton presents a mixed mating system throughout the complex. Given cotton's capacity for outcrossing, differences caused by the domestication process in cultivated individuals can have consequences for its wild relatives. This characterization of the diversity of the wild relatives in their natural distribution, as well as their interactions with the crop, will be useful to design and implement adequate strategies for conservation and biosecurity.

Ground Spider Guilds and Functional Diversity in Native Pine Woodlands and Eucalyptus Plantations.

Vegetation structure and floristics have a strong influence on the relative abundance of spider guilds and functional diversity of terrestrial arthropods. Human activities have transformed much of the temperate woodlands. The aim of this study was to test five predictions related to the guild distribution and functional diversity of the ground spider communities of Eucalyptus plantations and native pine woodlands in western Mexico. Spiders were collected every fortnight from September to November from 15 pitfalls positioned in each of the eight sites. We also assessed the cover of grasses, herbs, shrubs, and leaf litter in each site. We found that the abundances of ground hunters and sheet weavers between plantations and pine woodlands were different. Nevertheless, there was not a consistent difference between sites of each of the vegetation types. Most species of ground hunters, sheet web weavers, and many other hunters were associated with litter and the grass cover. Nonetheless, in some cases, species of different families belonging to the same guild responded to different variables. Wolf spiders were related to the grass Aristida stricta Micheaux, 1803, while the species of the other families of ground hunters were associated with leaf litter. One Eucalyptus plantation and one pine woodland had the highest functional diversity of all sites. These sites have a well developed litter and grass cover. Our study suggests that the abundance of litter and a high cover of grasses explain the occurrence of species with different traits, and these habitat components results in a high functional diversity.

[Ecological indicators of habitat and biodiversity in a Neotropical landscape: multitaxonomic perspective]. / Indicadores ecológicos de hábitat y biodiversidad en un paisaje neotropical: perspectiva multitaxonómica.

Ecological indicators of habitat and biodiversity in a Neotropical landscape: multitaxonomic perspective. The use of indicator species to characterize specific ecological areas is of high importance in conservation/restoration biology. The objective of this study was to identify indicator species of diverse taxa that characterize different landscape units, and to better understand how management alters species composition. We identified two ecomosaics, tropical rain forest and the agricultural matrix, each one comprised of four landscape units. The taxonomic groups studied included birds (highly mobile), butterflies (moderately mobile), terrestrial gastropods (less mobile) and trees (sessile). Sampling efficiency for both ecomosaics was > or = 86%. We found 50 mollusks, 74 butterflies, 218 birds and 172 tree species, for a total of 514 species. Using ordination and cluster analysis, we distinguished three habitat types in the landscape: tropical rainforest, secondary vegetation and pastures with scattered trees and live fences. The InVal (> or = 50%) method identified 107 indicator species, including 45 tree species, 38 birds, 14 butterflies and 10 gastropods. Of these, 35 trees, 10 birds, four butterflies and eight gastropods were forest indicators. Additionally, 10, 28, 10 and two species, respectively per group, were characteristic of the agricultural matrix. Our results revealed a pattern of diversity decrease of indicator species along the rainforest-secondary forest-pasture gradient. In the forest, the gastropods Carychium exiguum, Coelocentrum turris, Glyphyalinia aff. indentata y Helicina oweniana were significantly correlated (p < 0.05) with 90% of the other groups of flora and fauna indicator species. These findings suggest that gastropods may be good indicators of forest habitat quality and biodiversity. The secondary vegetation is an intermediate disturbance phase that fosters high diversity in the agricultural matrix. We exemplify a multitaxa approach, including mesofauna, for ecological monitoring of agricultural landscapes.

Indicadores ecológicos de hábitat y biodiversidad en un paisaje neotropical: perspectiva multitaxonómica

Ecological indicators of habitat and biodiversity in a Neotropical landscape: multitaxonomic perspective. The use of indicator species to characterize specific ecological areas is of high importance in conservation/ restoration biology. The objective of this study was to identify indicator species of diverse taxa that characterize different landscape units, and to better understand how management alters species composition. We identified two ecomosaics, tropical rain forest and the agricultural matrix, each one comprised of four landscape units. The taxonomic groups studied included birds (highly mobile), butterflies (moderately mobile), terrestrial gastropods (less mobile) and trees (sessile). Sampling efficiency for both ecomosaics was ≥86%. We found 50 mollusks, 74 butterflies, 218 birds and 172 tree species, for a total of 514 species. Using ordination and cluster analysis, we distinguished three habitat types in the landscape: tropical rainforest, secondary vegetation and pastures with scattered trees and live fences. The InVal (≥50%) method identified 107 indicator species, including 45 tree species, 38 birds, 14 butterflies and 10 gastropods. Of these, 35 trees, 10 birds, four butterflies and eight gastropods were forest indicators. Additionally, 10, 28, 10 and two species, respectively per group, were characteristic of the agricultural matrix. Our results revealed a pattern of diversity decrease of indicator species along the rainforest-secondary forest-pasture gradient. in the forest, the gastropods Carychium exiguum, Coelocentrum turris, Glyphyalinia aff. indentata y Helicina oweniana were significantly correlated (p<0.05) with 90% of the other groups of flora and fauna indicator species. These findings suggest that gastropods may be good indicators of forest habitat quality and biodiversity. The secondary vegetation is an intermediate disturbance phase that fosters high diversity in the agricultural matrix. We exemplify a multitaxa approach, including mesofauna, for ecological monitoring of agricultural landscapes. Rev. Biol. Trop. 59 (3): 1433-1451. Epub 2011 September 01.

El uso de especies indicadoras para caracterizar unidades ecológicas específicas es de gran importancia en la biología de la conservación/restauración. El objetivo del estudio fue identificar desde una perspectiva multitaxonómica, las especies que caracterizan distintas unidades de un paisaje. Así, se diferenciaron dos ecomosaicos: bosque tropical lluvioso y matriz agropecuaria con cuatro unidades de paisaje cada uno. Se incluyeron cuatro grupos biológicos: aves (muy móviles), mariposas frugívoras diurnas (moderadamente móviles), gasterópodos terrestres (poco móviles) y árboles (sésiles). La eficiencia de muestreo en los ecomosaicos fue ≥86%. Se registraron 50 especies de moluscos, 74 de mariposas, 218 de aves y 172 de árboles, totalizando 514 especies. Mediante ordenamiento y agrupamiento, se diferenciaron tres tipos de hábitats: bosque tropical lluvioso, vegetación secundaria y potreros con árboles. Aplicando el método InVal (≥50%), se identificaron 107 especies indicadoras, de las cuales 45 fueron árboles, 38 aves, 14 mariposas y diez gasterópodos. De éstas, 35 especies de árboles, diez de aves, cuatro de mariposas y ocho de gasterópodos son indicadoras del bosque. Diez, veintiocho, diez y dos especies (de cada grupo respectivamente) caracterizaron a la matriz agropecuaria. En el bosque, los gasterópodos Carychium exiguum, Coelocentrum turris, Glyphyalinia aff. indentata y Helicina oweniana se correlacionaron significativamente (p<0.05) con 90% de las especies indicadoras. Estos gasterópodos pueden, además de diferenciar la calidad del hábitat, ser indicadoras de la biodiversidad del bosque. La vegetación secundaria representó una fase intermedia de perturbación que propicia alta riqueza en la matriz agropecuaria. De manera que se aporta una perspectiva multitaxonómica que incluye el papel de la mesofauna en el monitoreo ecológico de agropaisajes.