Unravelling Structural Dynamics, Supramolecular Behavior, and Chiroptical Properties of Enantiomerically Pure Macrocyclic Tertiary Ureas and Thioureas.

The introduction of urea or thiourea functionality to the macrocycle skeleton represents an alternative way to control conformational dynamics of chiral, polyamines of a figure-shaped periodical structure. Formally highly symmetrical, these macrocycles may adapt diverse conformations, depending on the nature of an amide linker and on a substitution pattern within the aromatic units. The type of heteroatom X in the N-C(═X)-N units present in each vertex of the macrocycle core constitutes the main factor determining the chiroptical properties. In contrast to the urea-containing derivatives, the electronic circular dichroism of thioureas is controlled by the chiral neighborhood closest to the chromophore. The dynamically induced exciton couplet is observed when the biphenyl chromophores are present in the macrocycle core. In the solid state, the seemingly disordered molecules may create ordered networks stabilized by intermolecular S···halogen, H···halogen, and S···H interactions. The presence of two bromine substituents in each aromatic unit in thiourea-derived trianglamine gives rise to a self-sorting phenomenon in the crystal. In solution, this particular macrocycle exists as a dynamic equimolar mixture of two conformational diastereoisomers, differing in the spatial (clockwise and counter clockwise) arrangement of the C-Br bonds. In the crystal lattice, macrocycles of a given handedness assemble into homohelical layers.

Symmetry-driven diastereoselective functionalization of simple trianglamine.

We have found that derivatization of the trianglamine macrocycle by aliphatic aldehydes leads selectively to one of the two possible diastereomeric aminal products. X-ray analysis, NMR measurements and DFT calculations pointed to the product possessing a higher symmetry.

Chiral Triphenylacetic Acid Esters: Residual Stereoisomerism and Solid-State Variability of Molecular Architectures.

We have proven the usability and versatility of chiral triphenylacetic acid esters, compounds of high structural diversity, as chirality-sensing stereodynamic probes and as molecular tectons in crystal engineering. The low energy barrier to stereoisomer interconversion has been exploited to sense the chirality of an alkyl substituent in the esters. The structural information are cascaded from the permanently chiral alcohol (inducer) to the stereodynamic chromophoric probe through cooperative interactions. The ECD spectra of triphenylacetic acid esters are highly sensitive to very small structural differences in the inducer core. The tendencies to maximize the C-H···O hydrogen bonds, van der Waals interactions, and London dispersion forces determine the way of packing molecules in the crystal lattice. The phenyl embraces of trityl groups allowed, to some extent, the control of molecular organization in the crystal. However, the spectrum of possible molecular arrangements is very broad and depends on the type of substituent, the optical purity of the sample, and the presence of a second trityl group in the proximity. Racemates crystallize as the solid solution of enantiomers, where the trityl group acts as a protecting group for the stereogenic center. Therefore, the absolute configuration of the inducer is irrelevant to the packing mode of molecules in the crystal.

Dynamic optical activity induction in the N-alkyl-N'-trityl ureas and thioureas.

Considered to be rigid, the urea and thiourea functionalities, often used in material chemistry and in asymmetric organocatalysis, are able to transmit information regarding 3D structure from a permanently chiral inducer part to a dynamically chiral (reporter) part of the molecule. Despite a considerable distance between the inducer and the reporter parts of the molecule, the chirality transfer phenomenon has been demonstrated for a series of secondary N-alkyl-N'-trityl ureas and thioureas. The induction of helicity in a stereodynamic trityl propeller is revealed by rising non-zero Cotton effects in the area of trityl absorption. The information regarding the 3D structure of the inducer is transferred to the reporter part of the system through a set of weak but complementary electrostatic interactions. The presence of two supramolecular motifs in the same molecule, characterized by opposite properties, significantly affected the molecular solid state structure of the thioureas and their abilities to assemble. In the crystalline phase, the model, a chiral N-tert-butyl-thiourea derivative that retains the extended Z,Z conformation of the linker, is prone to form a supramolecular network typical of secondary ureas and thioureas. In contrast, the presence of the hydrophobic trityl group suppresses the thioamide NHS[double bond, length as m-dash]C hydrogen bonds. Therefore, trityl acts as a supramolecular protecting group for thioamide functionality, hampering the formation of hydrogen bonded networks in the solid state.

Sterically Crowded Trianglimines-Synthesis, Structure, Solid-State Self-Assembly, and Unexpected Chiroptical Properties.

The chiral, triangular-shape hexaimine macrocycles (trianglimines), bearing bulky alkynyl or aryl substituents were synthesized and studied by means of experimental and theoretical methods. The macrocyclization reactions are driven by the extraordinary stability of the trianglimine ring and provided products with high yields. Electrostatic repulsion between imine nitrogen atoms and the substituents forced an anti conformation of the aromatic linkers. Although the DFT-optimized structure of 7 is D3 symmetrical, in the crystal, the macrocycle adopts a bowl-like molecular shape. The macrocycle self-assembles into tail-to-tail dimers by mutual interdigitation of aromatic moieties. In contrast, macrocycle 8 adopts a rigid pillararene-like conformation. The nature of the substituent significantly affects the electronic properties of the linker. As a result, unexpectedly high exciton Cotton effects are observed in the electronic circular dichroism (ECD) spectra. The origin of these effects was subject of an in-depth study.

Enantiopure Tertiary Urea and Thiourea Derivatives of Trianglamine Macrocycle: Structural Studies and Metallogeling Properties.

Synthesis and detailed experimental and theoretical study on new urea and thiourea derivatives of chiral trianglamine are presented. In solution, the urea derivative of the trianglamine adopts cone conformation, whereas a respective thiourea derivative exists in solution predominantly as a partial cone conformer. In the crystalline phase, the thiourea trianglamine derivative adapts partial cone conformation. In the solid state, the two symmetry independent molecules of thiourea trianglamine create bilayers, containing molecules arranged in a zipper motif. The bilayers are separated by channels filled with disordered solvent molecules. The thiourea derivative of trianglimine appeared to be a simple, low molecular weight supergelator that formed stable chiral metallogels in N,N-dimethylformamide with Ag(I), Cu(I). and Cu(II) salts. The enantiomeric enrichment of the macrocycle is a necessary condition for effective gelling because neither racemic nor enantiomerically enriched samples (up to 50% ee) form metallogels. The metallogels formed from silver cations and thiourea trianglamine show reversible thixotropic property rarely observed in metallogels.

Solid solution of two diastereomers of [3a(R,S),7a(R,S)]-3-[(1'R)-1-phenylethyl]perhydro-1,3-benzothiazol-2-iminium chloride.

A mixture of two diastereomers with the configurations (3aS,7aS,1'R) and (3aR,7aR,1'R) forms co-crystals in which there is one unique molecule in the asymmetric unit, but the molecule displays disorder which is a result of the presence of the two diastereomers at the same crystallographic site. Theoretical calculations carried out by the DFT method with the 6-311++G(2df,p) basis set allowed for the estimation of the energy difference between the two diastereomers both in the isolated and the solid state, while the natural bond orbital (NBO), Mulliken, natural population (NPA) and CHelpG analyses helped to establish the electronic structure of the thazolidin-2-imine fragment.