Impact of Planting Date and Insecticide Application Methods on Melanaphis sorghi (Hemiptera: Aphididae) Infestation and Forage Type Sorghum Yield.

Studies on the management of the invasive Melanaphis sorghi are essential to refining integrated pest management strategies against M. sorghi in forage sorghum in the USA. The objective of this study was to determine the impact of planting date (early planting and late planting) and in-furrow and foliar insecticide application of flupyradifurone, on M. sorghi infestation and forage sorghum yield in Tifton, Georgia and Florence, South Carolina, USA, in 2020 and 2021. Early planted sorghum supported slightly higher aphid density and severity of infestation as evident in the greater cumulative insect days values in the early planted sorghum at both Florence and Tifton in 2020 and 2021. A single foliar application reduced aphid infestations below the threshold level of 50 aphids per leaf. In contrast, in-furrow insecticidal application in selected plots at both locations significantly suppressed M. sorghi density to near-zero levels. Yield results in Florence in 2020 showed that sorghum yield was over 50% greater in early planted plots compared to late planted plots. Both insecticide treatments (foliar and in-furrow) resulted in significantly higher yield than untreated plots. These data indicate that early planting coupled with in-furrow and foliar insecticide applications can suppress M. sorghi infestations and improve silage production in forage sorghum in the USA.

Host plant resistance, foliar insecticide application and natural enemies play a role in the management of Melanaphis sorghi (Hemiptera: Aphididae) in grain sorghum.

The invasive Melanaphis sorghi (Theobald; =Melanaphis sacchari Zehntner) is a serious pest of sorghum production in the southern USA. Demonstration of technologies that provide effective control is key to management of this pest. Here, we investigated the effect of host plant resistance (resistant cultivar: DKS37-07 and susceptible cultivar: DKS53-53) and a single foliar insecticide (flupyradifurone: Sivanto Prime) application on M. sorghi infestations and the role of natural enemy populations in grain sorghum production across five locations in four states in southeastern USA. Foliar insecticide application significantly suppressed M. sorghi infestations on both the resistant and susceptible sorghum cultivars across all locations. Planting the host plant resistant cultivar (DKS37-07) significantly reduced aphid infestation across all locations. Plant damage ratings did not vary widely, but there was generally a positive association between aphid counts and observed plant damage, suggesting that increasing aphid numbers resulted in corresponding increase in plant damage. Planting a host plant resistant cultivar and foliar insecticide application generally preserved grain yield. Both sorghum hybrids supported an array of different life stages of natural enemies (predators [lady beetle larvae and adults; hoverfly larvae and lacewing larvae] and parasitoids [a braconid and aphelinid]) for both the sprayed and non-sprayed treatments. We found a strong and significant positive relationship between the natural enemies and the M. sorghi infestation. Results suggest that planting a host plant resistant cultivar and the integration of natural enemies with insecticide control methods in the management of M. sorghi is central to the development of an effective pest management strategy against this invasive pest.

Genome-wide association mapping of resistance to the sorghum aphid in Sorghum bicolor.

Since 2013, the sorghum aphid (SA), Melanaphis sorghi (Theobald), has been a serious pest that hampers all types of sorghum production in the U.S. Known sorghum aphid resistance in sorghum is limited to a few genetic regions on SBI-06. In this study, a subset of the Sorghum Association Panel (SAP) was used along with some additional lines to identify genomic regions that confer sorghum aphid resistance. SAP lines were grown in the field and visually evaluated for SA resistance during the growing seasons of 2019 and 2020 in Tifton, GA. In 2020, the SAP accessions were also evaluated for SA resistance in the field using drone-based high throughput phenotyping (HTP). Flowering time was recorded in the field to confirm that our methods were sufficient for identifying known quantitative trait loci (QTL). This study combined phenotypic data from field-based visual ratings and reflectance data to identify genome-wide associated (GWAS) marker-trait associations (MTA) using genotyping-by-sequencing (GBS) data. Several MTAs were identified for SA-related traits across the genome, with a few common markers that were consistently identified on SBI-08 and SBI-10 for aphid count and plant damage, as well as loci for reflectance-based traits on SBI-02, SBI-03, and SBI-05. Candidate genes encoding leucine-rich repeats (LRR), Avr proteins, lipoxygenases (LOXs), calmodulins (CAM) dependent protein kinase, WRKY transcription factors, flavonoid biosynthesis genes, and 12-oxo-phytodienoic acid reductase were identified near SNPs that had significant associations with different SA traits. In this study, flowering time-related genes were also identified as a positive control for the methods. The total phenotypic variation explained by significant SNPs across SA-scored traits, reflectance data, and flowering time ranged from 6 to 61%, while the heritability value ranged from 4 to 69%. This study identified three new sources of resistant lines to sorghum aphid. These results supported the existing literature, and also revealed several new loci. Markers identified in this study will support marker-assisted breeding for sorghum aphid resistance.

Two decades of association mapping: Insights on disease resistance in major crops.

Climate change across the globe has an impact on the occurrence, prevalence, and severity of plant diseases. About 30% of yield losses in major crops are due to plant diseases; emerging diseases are likely to worsen the sustainable production in the coming years. Plant diseases have led to increased hunger and mass migration of human populations in the past, thus a serious threat to global food security. Equipping the modern varieties/hybrids with enhanced genetic resistance is the most economic, sustainable and environmentally friendly solution. Plant geneticists have done tremendous work in identifying stable resistance in primary genepools and many times other than primary genepools to breed resistant varieties in different major crops. Over the last two decades, the availability of crop and pathogen genomes due to advances in next generation sequencing technologies improved our understanding of trait genetics using different approaches. Genome-wide association studies have been effectively used to identify candidate genes and map loci associated with different diseases in crop plants. In this review, we highlight successful examples for the discovery of resistance genes to many important diseases. In addition, major developments in association studies, statistical models and bioinformatic tools that improve the power, resolution and the efficiency of identifying marker-trait associations. Overall this review provides comprehensive insights into the two decades of advances in GWAS studies and discusses the challenges and opportunities this research area provides for breeding resistant varieties.

Bemisia tabaci on Vegetables in the Southern United States: Incidence, Impact, and Management.

Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae) is among the most economically important insect pests of various vegetable crops in the Southern United States. This insect is considered a complex of at least 40 morphologically indistinguishable cryptic species. Bemisia tabaci Middle East-Asia Minor 1 (MEAM1) was initially introduced in the United States around 1985 and has since rapidly spread across the Southern United States to Texas, Arizona, and California, where extreme field outbreaks have occurred on vegetable and other crops. This pest creates extensive plant damage through direct feeding on vegetables, secreting honeydew, causing plant physiological disorders, and vectoring plant viruses. The direct and indirect plant damage in vegetable crops has resulted in enormous economic losses in the Southern United States, especially in Florida, Georgia, and Texas. Effective management of B. tabaci on vegetables relies mainly on the utilization of chemical insecticides, particularly neonicotinoids. However, B. tabaci has developed considerable resistance to most insecticides. Therefore, alternative integrated pest management (IPM) strategies are required, such as cultural control by manipulation of production practices, resistant vegetable varieties, and biological control using a suite of natural enemies for the management of the pest.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Pearl millet [Cenchrus americanus (L.) Morrone] is a staple food for more than 90 million farmers in arid and semi-arid regions of sub-Saharan Africa, India and South Asia. We report the ∼1.79 Gb draft whole genome sequence of reference genotype Tift 23D2B1-P1-P5, which contains an estimated 38,579 genes. We highlight the substantial enrichment for wax biosynthesis genes, which may contribute to heat and drought tolerance in this crop. We resequenced and analyzed 994 pearl millet lines, enabling insights into population structure, genetic diversity and domestication. We use these resequencing data to establish marker trait associations for genomic selection, to define heterotic pools, and to predict hybrid performance. We believe that these resources should empower researchers and breeders to improve this important staple crop.

Development of a High-Density Linkage Map and Tagging Leaf Spot Resistance in Pearl Millet Using Genotyping-by-Sequencing Markers.

Pearl millet [ (L.) R. Br; also (L.) Morrone] is an important crop throughout the world but better genomic resources for this species are needed to facilitate crop improvement. Genome mapping studies are a prerequisite for tagging agronomically important traits. Genotyping-by-sequencing (GBS) markers can be used to build high-density linkage maps, even in species lacking a reference genome. A recombinant inbred line (RIL) mapping population was developed from a cross between the lines 'Tift 99DB' and 'Tift 454'. DNA from 186 RILs, the parents, and the F was used for 96-plex KI GBS library development, which was further used for sequencing. The sequencing results showed that the average number of good reads per individual was 2.2 million, the pass filter rate was 88%, and the CV was 43%. High-quality GBS markers were developed with stringent filtering on sequence data from 179 RILs. The reference genetic map developed using 150 RILs contained 16,650 single-nucleotide polymorphisms (SNPs) and 333,567 sequence tags spread across all seven chromosomes. The overall average density of SNP markers was 23.23 SNP/cM in the final map and 1.66 unique linkage bins per cM covering a total genetic distance of 716.7 cM. The linkage map was further validated for its utility by using it in mapping quantitative trait loci (QTLs) for flowering time and resistance to leaf spot [ (Cke.) Sacc.]. This map is the densest yet reported for this crop and will be a valuable resource for the pearl millet community.