Understanding the Droplet Diffusion in Ionic Liquid Microemulsions.

Ionic liquids (ILs) as polar components in nonaqueous microemulsions are complex formulations that have interesting transport and structural properties, and offer broader applicability of ILs in areas such as drug delivery and cleaning technology. The phase behavior, electrical conductivity, and nanostructures of these formulations have been investigated for quite some time, but the characteristics of the diffusion of nanodroplets were rarely explored─ and hence little understood. This work investigates the droplet diffusion processes in a series of IL-microemulsions containing 1-butyl-3-methylimidazolium tetrafluoroborate ([C4mim]BF4) by means of viscosity and depolarized dynamic light scattering (DDLS) measurements. The intensity correlation functions are strikingly similar to polymeric solutions in nonaqueous media and aqueous microemulsions containing block copolymers─having bimodal relaxations that are separated by three to four decades of correlation delay times. The "faster" diffusion process is likely a collective process characterizing the correlated motions of droplets in droplet clusters. The collective diffusion coefficient Dcol values are quite comparable to aqueous microemulsions. The "slower" diffusion is likely due to the "caging" effect caused by nearby clusters and/or bulk solvent─this mode may be linked to the microemulsion bulk viscosity. Interestingly, the Dcol variations on increasing [C4mim]BF4 concentration are strongly correlated to the microemulsion viscosity changes as well as locations of these compositions on the microemulsion phase diagram.

The effects of surfactant and oil chemical structures on self-assembly in apolar media.

The thermodynamic and chemical structural aspects of surfactant self-assembly in aqueous systems have been much studied. On the other hand, for oil-water interfaces the effects of chemical structures of surfactants and solvents have received less attention. This review focuses on the surfactant chemical effects in low dielectric solvents, in particular formation and properties of surfactant films at oil-water interfaces. For this purpose, reversed micelles (RMs) and water-in-oil (W/O) microemulsions (µEs) serve as model systems, since electrostatic effects are minimized, allowing a focus on chain architecture of the surfactants and oil solvents themselves. It is noted that chemical structure can have profound effects on stability and self-assembly, suggesting a possibility of identifying unified chemical principles for designing and formulating systems across various thermodynamic conditions.

Ultraslow Relaxation in Aprotic Double Salt Ionic Liquids.

A mixture of two pure ionic liquids (ILs) or double salt ILs (DSILs) can push the limits of ILs in terms of unraveling their unique physicochemical properties and potential in clean technology. While the correlated ion dynamics and heterogeneity in the bulk of pure ILs have been reported, such a phenomenon at longer timescales in DSILs has never been elucidated. Here, a combination of temperature-dependent polarized dynamic light scattering and rheological measurements has been employed to reveal the presence of structural and ultraslow relaxation in three DSILs, each containing a 1-ethyl-3-methylimidazolium cation and two different anions. The slow relaxation caused by Brownian diffusion of cluster-like arrangements occurs at a timescale of a few to several hundred milliseconds; both the relaxation processes, nevertheless, are Arrhenius in nature. Notably, slow relaxation in the DSILs is much different compared to that in the pure ILs. The decay of intensity correlation functions (ICFs) and average hydrodynamic correlation length of the clusters and their response to temperature markedly vary with the nature of the two anions present in the DSILs. Stretched exponential analyses of the ICFs disclose the cluster-to-cluster transfer of ionic species as well as percolation dynamics among clusters. The identity of anions also governs whether the DSILs follow or violate the Stokes-Einstein relationship or not.

Molecular Recognition of Azelaic Acid and Related Molecules with DNA Polymerase I Investigated by Molecular Modeling Calculations.

Molecular recognition has central role on the development of rational drug design. Binding affinity and interactions are two key components which aid to understand the molecular recognition in drug-receptor complex and crucial for structure-based drug design in medicinal chemistry. Herein, we report the binding affinity and the nonbonding interactions of azelaic acid and related compounds with the receptor DNA polymerase I (2KFN). Quantum mechanical calculation was employed to optimize the modified drugs using B3LYP/6-31G(d,p) level of theory. Charge distribution, dipole moment and thermodynamic properties such as electronic energy, enthalpy and free energy of these optimized drugs are also explored to evaluate how modifications impact the drug properties. Molecular docking calculation was performed to evaluate the binding affinity and nonbonding interactions between designed molecules and the receptor protein. We notice that all modified drugs are thermodynamically more stable and some of them are more chemically reactive than the unmodified drug. Promise in enhancing hydrogen bonds is found in case of fluorine-directed modifications as well as in the addition of trifluoroacetyl group. Fluorine participates in forming fluorine bonds and also stimulates alkyl, pi-alkyl interactions in some drugs. Designed drugs revealed increased binding affinity toward 2KFN. A1, A2 and A3 showed binding affinities of -8.7, -8.6 and -7.9 kcal/mol, respectively against 2KFN compared to the binding affinity -6.7 kcal/mol of the parent drug. Significant interactions observed between the drugs and Thr358 and Asp355 residues of 2KFN. Moreover, designed drugs demonstrated improved pharmacokinetic properties. This study disclosed that 9-octadecenoic acid and drugs containing trifluoroacetyl and trifluoromethyl groups are the best 2KFN inhibitors. Overall, these results can be useful for the design of new potential candidates against DNA polymerase I.

Halogen-directed drug design for Alzheimer's disease: a combined density functional and molecular docking study.

A series of halogen-directed donepezil drugs has been designed to inhibit acetyl cholinesterase (AChE). Density Functional theory (DFT) has been employed to optimize the chair as well as boat conformers of the parent drug and modified ligands at B3LYP/MidiX and B3LYP/6-311G + (d,p) level of theories. Charge distribution, dipole moment, enthalpy, free energy and molecular orbitals of these ligands are also investigated to understand how the halogen-directed modifications impact the ligand structure and govern the non-bonding interactions with the receptors. Molecular docking calculation has been performed to understand the similarities and differences between the binding modes of unmodified and halogenated chair-formed ligands. Molecular docking indicated donepezil and modified ligands had non-covalent interactions with hydrophobic gorges and anionic subsites of AChE. The -CF3-directed ligand possessed the most negative binding affinity. Non-covalent interactions within the ligand-receptor systems were found to be mostly hydrophobic and π- stacking type. F, Cl and -CF3 containing ligands emerge as effective and selective AChE inhibitors, which can strongly interact with the two active sites of AChE. In addition, we have also investigated selected pharmacokinetic parameters of the parent and modified ligands.

Dynamic Percolation and Swollen Behavior of Nanodroplets in 1-Ethyl-3-methylimidazolium Trifluoromethanesulfonate/Triton X-100/Cyclohexane Microemulsions.

Microemulsions comprising an ionic liquid (IL), 1-ethyl-3-methylimidazolium trifluoromethanesulfonate ([emim][OTf]), as the polar component, Triton X-100 as a surfactant, and cyclohexane as the nonpolar medium were prepared and characterized. Conductivity and dynamic viscosity data were critically analyzed to confirm dynamic percolation among the droplets that are in continuous motion, aggregation, and fission. The transition from oil-continuous phase to bicontinuous phase was observed at the conductance and viscosity percolation thresholds and sharp changes in the values of conductivity and dynamic viscosity could be identified. Dynamic light scattering measurements revealed swelling of the droplets, which varied within the hydrodynamic diameter range of 10-100 nm. Diffusivity of the droplets suggested less Brownian movement with increased amount of the IL. Moreover, changes in the droplet sizes and diffusivity with increase in IL content supported dynamic percolation within the systems.

Non-covalent interactions involving halogenated derivatives of capecitabine and thymidylate synthase: a computational approach.

Capecitabine, a fluoropyrimidine prodrug, has been a frequently chosen ligand for the last one and half decades to inhibit thymidylate synthase (TYMS) for treatment of colorectal cancer. TYMS is a key enzyme for de novo synthesis of deoxythymidine monophosphate and subsequent synthesis of DNA. Recent years have also seen the trait of modifying ligands using halogens and trifluoromethyl (-CF3) group to ensure enhanced drug performance. In this study, in silico modification of capecitabine with Cl, Br, I atoms and -CF3 group has been performed. Density functional theory has been employed to optimize the drug molecules and elucidate their thermodynamic and electrical properties such as Gibbs free energy, enthalpy, electronic energy, dipole moment and frontier orbital features (HOMO-LUMO gap, hardness and softness). Flexible and rigid molecular docking have been implemented between drugs and the receptor TYMS. Both inter- and intra-molecular non-covalent interactions involving the amino acid residues of TYMS and the drug molecules are explored in details. The drugs were superimposed on the resolved crystal structure (at 1.9 Å) of ZD1694/dUMP/TYMS system to shed light on similarity of the binding of capecitabine, and its modifiers, to that of ZD1694. Together, these results may provide more insights prior to synthesizing halogen-directed derivatives of capecitabine for anticancer treatment.