Investigating the transport and colloidal behavior of Fe3O4 nanoparticles in aqueous and porous media under varying solution chemistry parameters.

The possible adverse effects of engineered iron oxide nanoparticles, especially magnetite (Fe3O4 NP), on human health and the environment, have raised concerns about their transport and behavior in soil and water systems. Accumulating these NPs in the environment can substantially affect soil and water quality and the well-being of aquatic and terrestrial organisms. Therefore, it is essential to examine the factors that affect Fe3O4 NP transportation and behavior in soil and water systems to determine their possible environmental fate. In this work, experiments were conducted in aqueous and porous media using an environmentally relevant range of pH (5, 7, 9), ionic strength (IS) (10, 50, 100 mM), and humic acid (HA) (0.1, 1, 10 mg L-1) concentrations. Fe3O4 NPs exhibited severe colloidal instability at pH 7 (⁓ = pHPZC) and showed an improvement in apparent colloidal stability at pH 5 and 9 in aquatic and terrestrial environments. HA in the background solutions promoted the overall transport of Fe3O4 NPs by enhancing the colloidal stability. The increased ionic strength in aqueous media hindered the transport by electron double-layer compression and electrostatic repulsion; however, in porous media, the transport was hindered by ionic compression. Furthermore, the transport behavior of Fe3O4 NPs was investigated in different natural waters such as rivers, lakes, taps, and groundwater. The interaction energy pattern in aquatic systems was estimated using the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory. This study showed the effects of various physical-chemical conditions on Fe3O4 NP transport in aqueous and porous (sand) media.

Comparative toxicity assessment of individual, binary and ternary mixtures of SiO2, Fe3O4, and ZnO nanoparticles in freshwater microalgae, Scenedesmus obliquus: Exploring the role of dissolved ions.

Metal oxide nanoparticles (NPs) are considered among the most prevalent engineered nanomaterials. To have a deeper understanding of the mode of action of multiple metal oxide nanoparticles in mixtures, we have used a unicellular freshwater microalga Scenedesmus obliquus as a model organism. The toxicity of silicon dioxide (SiO2), iron oxide (Fe3O4), and zinc oxide (ZnO) NPs was studied individually as well as in their binary (SiO2 + Fe3O4, Fe3O4 + ZnO, and ZnO + SiO2) and ternary (SiO2 + Fe3O4 + ZnO) combinations. The effects of metal ions from ZnO and Fe3O4 were investigated as well. The results observed from the study, showed that a significant amount of toxicity was contributed by the dissolved ions in the mixtures of the nanoparticles. Decreases in the cell viability, ROS generation, lipid peroxidation, antioxidant enzyme activity, and photosynthetic efficiency were analyzed. Among all the individual particles, ZnO NPs showed the maximum effects and increased the toxicities of the binary mixtures. The binary and ternary mixtures of the NPs clearly showed increased toxic effects in comparison with the individual entities. However, the ternary combination had lesser toxic effects than the binary combination of Fe3O4 + ZnO. The decline in cell viability and photosynthetic efficiency were strongly correlated with various oxidative stress biomarkers emphasizing the crucial role of reactive oxygen species in inducing the toxic effects. The findings from this study highlight the importance of evaluating the combinatorial effects of various metal oxide NPs as part of a comprehensive ecotoxicity assessment in freshwater microalgae.

Fungal effectors versus defense-related genes of B. juncea and the status of resistant transgenics against fungal pathogens.

Oilseed brassica has become instrumental in securing global food and nutritional security. B. juncea, colloquially known as Indian mustard, is cultivated across tropics and subtropics including Indian subcontinent. The production of Indian mustard is severely hampered by fungal pathogens which necessitates human interventions. Chemicals are often resorted to as they are quick and effective, but due to their economic and ecological unsustainability, there is a need to explore their alternatives. The B. juncea-fungal pathosystem is quite diverse as it covers broad-host range necrotrophs (Sclerotinia sclerotiorum), narrow-host range necrotrophs (Alternaria brassicae and A. brassicicola) and biotrophic oomycetes (Albugo candida and Hyaloperonospora brassica). Plants ward off fungal pathogens through two-step resistance mechanism; PTI which involves recognition of elicitors and ETI where the resistance gene (R gene) interacts with the fungal effectors. The hormonal signalling is also found to play a vital role in defense as the JA/ET pathway is initiated at the time of necrotroph infection and SA pathway is induced when the biotrophs attack plants. The review discuss the prevalence of fungal pathogens of Indian mustard and the studies conducted on effectoromics. It covers both pathogenicity conferring genes and host-specific toxins (HSTs) that can be used for a variety of purposes such as identifying cognate R genes, understanding pathogenicity and virulence mechanisms, and establishing the phylogeny of fungal pathogens. It further encompasses the studies on identifying resistant sources and characterisation of R genes/quantitative trait loci and defense-related genes identified in Brassicaceae and unrelated species which, upon introgression or overexpression, confer resistance. Finally, the studies conducted on developing resistant transgenics in Brassicaceae have been covered in which chitinase and glucanase genes are mostly used. The knowledge gained from this review can further be used for imparting resistance against major fungal pathogens.

Comparative ecotoxicity of graphene, functionalized multi-walled CNTs, and their mixture in freshwater microalgae, Scenedesmus obliquus: analyzing the role of oxidative stress.

Due to their remarkable properties, the applications of carbon-based nanomaterials (CNMs) such as graphene and functionalized multi-walled carbon nanotubes (f-MWCNTs) are increasing. These CNMs can enter the freshwater environment via numerous routes, potentially exposing various organisms. The current study assesses the effects of graphene, f-MWCNTs, and their binary mixture on the freshwater algal species Scenedesmus obliquus. The concentration for the individual materials was kept at 1 mg L-1, while graphene and f-MWCNTs were taken at 0.5 mg L-1 each for the combination. Both the CNMs caused a decrease in cell viability, esterase activity, and photosynthetic efficiency in the cells. The cytotoxic effects were accompanied by increased hydroxyl and superoxide radical generation, lipid peroxidation, antioxidant enzyme activity (catalase and superoxide dismutase), and mitochondrial membrane potential. Graphene was more toxic compared to f-MWCNTs. The binary mixture of the pollutants demonstrated a synergistic enhancement of the toxic potential. Oxidative stress generation played a critical role in toxicity responses, as noted by a strong correlation between the physiological parameters and the biomarkers of oxidative stress. The outcomes from this study emphasize the significance of considering the combined effects of various CNMs as part of a thorough evaluation of ecotoxicity in freshwater organisms.

Development of genome-specific SSR markers for the identification of introgressed segments of Sinapis alba in the Brassica juncea background.

Sinapis alba L. (white mustard) is recognized for carrying host resistance against several biotic stresses including, Alternaria brassicae, which is responsible for blight disease in cultivated Brassica. However, another cultivated Brassica has a dearth for genetic resistance for these stresses due to its narrow genetic base. Therefore, we performed introgression of the genomic regions of S. alba into backcross progenies of B. juncea + S. alba somatic hybrids. These advanced generations with S. alba chromosomal segments are named B. juncea-S. alba introgression lines (ILs). In the present study, we developed the S. alba genome-specific microsatellites from the draft genome to track the S. alba genome introgressions and responsible regions for resistance to A. brassicae. For developing these SSR markers, the unique contigs of S. alba draft genome were identified through BLASTN with B. juncea, B. rapa, B. nigra, and B. oleracea reference genome assemblies, including mitochondrial and chloroplast genomes, and further used for marker development. Out of 403,423 contigs, we have identified 65,343 non-hit contigs of S. alba that yielded a total of 1231 genome-specific microsatellites, out of which 1107 were expected to produce a single allele upon amplification. Out of the total SSRs, 234 primer pairs were randomly picked from whole-genome and validated between B. juncea and S. alba genomes for their specificity. In the validation experiment, these markers gave a single amplicon into S. alba, while they did not amplify in B. juncea genome. Of these, 59 microsatellites were used to track S. alba introgressions in 80 BC2F3 lines. To the best of our knowledge, this is the first time that these two genetic resources are developed in the form of B. juncea-S. alba ILs and S. alba-specific markers. Therefore, both the resources unlock a new avenue of Brassica breeding for biotic and abiotic stresses along with quality traits. Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-022-03402-0.

2,4,6-trinitrotoluene (TNT) degradation by Indiicoccus explosivorum (S5-TSA-19).

2,4,6-trinitrotoluene (TNT), a nitro-aromatic explosive commonly used for defense and several non-violent applications is contributing to serious environmental pollution problems including human health. The current study investigated the remediation potential of a native soil isolate, i.e., Indiicoccus explosivorum (strain S5-TSA-19) isolated from collected samples of an explosive manufacturing site, against TNT. The survivability of I. explosivorum against explosives is indirectly justified through its isolation; thus, it is being chosen for further study. At a TNT concentration of 120 mg/L within an optimized environment (i.e., at 30 °C and 120 rpm), the isolate was continually incubated for 30 days in a minimal salt medium (MSM). The proliferation of the isolate and the concentration of TNT, nitrate, nitrite, and ammonium ion were evaluated at a particular time during the experiment. Within 168 h (i.e., 7 days) of incubation, I. explosivorum co-metabolically degraded 100% TNT. The biodegradation procedure succeeded the first-order kinetics mechanism. Formations of additional metabolites like 2,4-dinitrotoluene (DNT), 2,4-diamino-6-nitrotoluene (2-DANT), and 2-amino-4,6-dinitrotoluene (2-ADNT), were also witnessed. TNT seems to be non-toxic for the isolate, as it reproduced admirably in TNT presence. To date, it is the first report of Indiicoccus explosivorum, efficiently bio-remediating TNT, i.e., a nitro-aromatic compound via different degradation pathways, leading to the production of simpler as well as less harmful end products. Further, at the field-scale application, Indiicoccus explosivorum may be explored for the bioremediation of TNT (i.e., a nitro-aromatic compound)-contaminated effluents.

Nano-SiO2 transport and retention in saturated porous medium: Influence of pH, ionic strength, and natural organics.

Nano silica (nSiO2), induces potential harmful effects on the living environment and human health. It is well established that SiO2 facilitates the co-transport of a variety of other contaminants, including heavy metals and pesticides. The current study focused on the systematic evaluation of the effects of multiple physicochemical parameters such as pH (5, 7, and 9), ionic strength (10, 50, and 100 mM), and humic acid (0.1, 1, and 10 mg/L) on the transport and retention of nSiO2 in saturated porous medium. Additionally, the influent concentration of nSiO2 (10, 50, and 100 mg/L) was also varied. Our experimental findings indicate that the size of nSiO2 aggregates was directly related to the pH, ionic strength, HA, and particle concentration had a significant impact on the breakthrough curves (BTCs). The stability provided by the varying concentrations of pH and humic acid had a significant effect on the size of nSiO2 aggregates and transport (C/C0 > 0.7). The presence of a greater magnitude of negative charge on the surface of both nSiO2 and quartz sand resulted in less aggregation and enhanced flow of nSiO2 through the sand column. The Electrostatic and steric repulsion forces were the primary governing mechanisms in relation to the size of nSiO2 aggregates, affecting the single-collector efficiency and attachment efficiency, which determined the maximal transport of nSiO2. Conversely, a probable increase in Van der Waals force of attraction exacerbated the particle deposition and reduced their mobility for high ionic strength, and particle concentrations (C/C0 < 0.1). The formation of large nSiO2 aggregates, in particular, was principally responsible for the enhancement of nSiO2 retention in sand columns over a broad range of IS and particle concentration. The interaction energy profiles based on the Derjaguin-Landau-Verwey-Overbeek (DLVO) theory were determined to understand the mechanism of nSiO2 deposition. Aditionally, all the experimental BTCs were mathematically simulated and justified by the colloidal filtration theory (CFT). Considering the environmental ramifications, the transport behavior of nSiO2 was further evaluated in various natural matrices such as river, lake, ground, and tap water. The nSiO2 suspended in the river, lake, and tap water had significantly higher mobility (C/C0 > 0.7), whereas groundwater indicated higher retention (C/C0 < 0.3). The study advances our collective knowledge of physicochemical and environmental parameters that can affect particle mobility.

A comprehensive estimate of the aggregation and transport of nSiO2 in static and dynamic aqueous systems.

Silicon dioxide nanoparticles (nSiO2) are extensively used in diverse fields and are inevitably released into the natural environment. Their overall aggregation behaviour in the environmental matrix can determine their fate and ecotoxicological effect on terrestrial and aquatic life. The current study systematically evaluates multiple parameters that can influence the stability of colloidal nSiO2 (47 nm) in the natural aquatic environment. At first, the influence of several hydrochemical parameters such as pH (5, 7, and 9), ionic strength (IS) (10, 50, and 100 mM), and humic acid (HA) (0.1, 1, and 10 mg L-1) was examined to understand the overall aggregation process of nSiO2. Furthermore, the synergistic and antagonistic effects of ionic strength and humic acid on the transport of nSiO2 in the aqueous environment were examined. Our experimental findings indicate that pH, ionic strength, and humic acid all had a profound influence on the sedimentation process of nSiO2. The experimental observations were corroborated by calculating the DLVO interaction energy profile, which was shown to be congruent with the transport patterns. The present study also highlights the influence of high and low shear forces on the sedimentation process of nSiO2 in the aqueous medium. The presence of shear force altered the collision efficiency and other interactive forces between the nanoparticles in the colloidal suspension. Under the experimental stirring conditions, a higher abundance of dispersed nSiO2 in the upper layer of the aqueous medium was noted. Additionally, the transport behaviour of nSiO2 was studied in a variety of natural water systems, including rivers, lakes, ground, and tap water. The study significantly contributes to our understanding of the different physical, chemical, and environmental aspects that can critically impact the sedimentation and spatial distribution of nSiO2 in static and dynamic aquatic ecosystems.

Biodegradation of octogen and hexogen by Pelomonas aquatica strain WS2-R2A-65 under aerobic condition.

Biodegradation ability of a native bacterial species Pelomonas aquatica strain WS2-R2A-65, isolated from nitramine explosive-contaminated effluent, for octogen (HMX) and hexogen (RDX) under aerobic condition has been explored in this study. Scanning electron microscopy indicated that the isolate WS2-R2A-65 retained its morphology both in the presence and absence of HMX or RDX. During an incubation period of 20 days, the isolate cometabolically degraded 78 and 86% of HMX and RDX with initial concentrations 6 and 60 mg L-1, respectively. The degradation mechanism followed the first-order kinetics for both the nitramines with a 50% degradation time of 9.9 and 7.7 days for HMX and RDX, respectively. Positive electrospray ionisation mass spectroscopy indicates that biodegradation of nitamines follows multiple degradation pathways with one involving ring cleavage via single-electron transfer to nitramines leading to the elimination of single nitrite ion as evident from the formation of methylenedinitramine (MEDINA) and its methyl derivatives. The other pathways involve the reduction of both the nitramines to their nitroso, hydroxylamino and amino derivatives. These metabolites get further ring cleaved to give secondary metabolites viz. N-hydroxymethylmethylenedintramine, N-nitrosoamino and hydrazinyl derivatives leading to simpler less hazardous end products. Thus, the isolate WS2-R2A-65 proves to be an efficient microbial species for bioremediation of nitramines-contaminated effluent.

Current Status of the Disease-Resistant Gene(s)/QTLs, and Strategies for Improvement in Brassica juncea.

Brassica juncea is a major oilseed crop in tropical and subtropical countries, especially in south-east Asia like India, China, Bangladesh, and Pakistan. The widespread cultivation of genetically similar varieties tends to attract fungal pathogens which cause heavy yield losses in the absence of resistant sources. The conventional disease management techniques are often expensive, have limited efficacy, and cause additional harm to the environment. A substantial approach is to identify and use of resistance sources within the Brassica hosts and other non-hosts to ensure sustainable oilseed crop production. In the present review, we discuss six major fungal pathogens of B. juncea: Sclerotinia stem rot (Sclerotinia sclerotiorum), Alternaria blight (Alternaria brassicae), White rust (Albugo candida), Downy mildew (Hyaloperonospora parasitica), Powdery mildew (Erysiphe cruciferarum), and Blackleg (Leptoshaeria maculans). From discussing studies on pathogen prevalence in B. juncea, the review then focuses on highlighting the resistance sources and quantitative trait loci/gene identified so far from Brassicaceae and non-filial sources against these fungal pathogens. The problems in the identification of resistance sources for B. juncea concerning genome complexity in host subpopulation and pathotypes were addressed. Emphasis has been laid on more elaborate and coordinated research to identify and deploy R genes, robust techniques, and research materials. Examples of fully characterized genes conferring resistance have been discussed that can be transformed into B. juncea using advanced genomics tools. Lastly, effective strategies for B. juncea improvement through introgression of novel R genes, development of pre-breeding resistant lines, characterization of pathotypes, and defense-related secondary metabolites have been provided suggesting the plan for the development of resistant B. juncea.

Study on aerobic degradation of 2,4,6-trinitrotoluene (TNT) using Pseudarthrobacter chlorophenolicus collected from the contaminated site.

2,4,6-trinitrotoluene or TNT, a commonly used explosive, can pollute soil and groundwater. Conventional remediation practices for the TNT-contaminated sites are neither eco-friendly nor cost-effective. However, exploring bacteria to biodegrade TNT into environment-friendly compound(s) is an interesting area to explore. In this study, an indigenous bacterium, Pseudarthrobacter chlorophenolicus, strain S5-TSA-26, isolated from explosive contaminated soil, was investigated for potential aerobic degradation of TNT for the first time. The isolated strain of P. chlorophenolicus was incubated in a minimal salt medium (MSM) containing 120 mg/L TNT for 25 days at specified conditions. TNT degradation pattern by the bacterium was monitored at regular interval using UV-Vis spectrophotometry, high-performance liquid chromatography, and liquid chromatography mass spectrophotometric, by estimating nitrate, nitrite, and ammonium ion concentration and other metabolites such as 2,4-dinitrotoluene (DNT), 2-amino-4,6-dinitrotoluene (2-ADNT), and 2,4-diamino-6-nitrotoluene (2-DANT). It was observed that, in the presence of TNT, there was no reduction in growth of the bacterium although it multiplied well in the presence of TNT along with no considerable morphological changes. Furthermore, it was found that TNT degraded completely within 15 days of incubation. Thus, from this study, it may be concluded that the bacterium has the potential for degrading TNT completely with the production of non-toxic by-products and might be an important bacterium for treating TNT (i.e., a nitro-aromatic compound)-contaminated sites.

Positive, not negative, self-compassion mediates the relationship between self-esteem and well-being.

OBJECTIVES: The study examined the predictive strengths of self-esteem, and positive and negative self-compassion for hedonic and eudaimonic well-being as well as assessed the relative mediating roles of positive and negative self-compassion for the relationships among self-esteem, and hedonic and eudaimonic well-being. DESIGN: A correlational design was employed through which self-esteem, self-compassion, and hedonic and eudaimonic well-being were measured. METHODS: One hundred thirty-four male (M = 25.11, SD = 1.66) and 138 female (M = 21.89, SD = 1.87) participants were chosen by a convenient sampling. RESULTS: The findings evinced that there were significant positive correlations among self-esteem, positive self-compassion, and hedonic and eudaimonic well-being while negative self-compassion exhibited small positive correlations with both the well-being measures (criterion). The regression analyses showed that self-esteem and positive self-compassion reflected significant predictive strengths for hedonic as well as eudaimonic well-being while negative self-compassion did not. This was also true for the social and psychological aspects of well-being. The ß values reflected that positive self-compassion did show a higher contribution for both the well-being measures as compared to self-esteem. CONCLUSIONS: The findings evinced that positive, not negative, self-compassion mediated the relationship between self-esteem and hedonic well-being as well as self-esteem and eudaimonic well-being. Moreover, self-esteem and self-compassion have predictive strengths for both kinds of well-being. The findings showed the relevance of self-esteem and self-compassion to underscore well-being. The implications and directions for future researchers have been discussed. PRACTITIONER POINTS: Contrary to the earlier findings suggesting self-esteem and self-compassion carrying relevance to explicate performance and well-being of people with individualistic and collectivistic cultures, respectively, the findings of this study suggest both the constructs to be useful to understand the well-being of people with both the values belonging especially to the fast-changing societies like India. The study also suggests reconceptualization and empirical verification of self-compassion that will make it more effective for enhancing and promoting interventions for positive life outcomes.

Restoring and preserving capacity of self-affirmation for well-being in Indian adults with non-clinical depressive tendencies.

BACKGROUND: Although self-affirmation has been reported to enhance well-being and other positive life outcomes in normal adults, little is known about its capacity to restore and preserve well-being in adults with depressive tendencies. The current study attempts to expound the restoring and preserving capacity of self-affirmation for well-being in Indian adults with non-clinical depressive tendencies. PARTICIPANTS AND PROCEDURE: The study used a sequential research design. Eighty participants (22-27 years) with depressive tendencies were chosen through purposive sampling and were randomly assigned equally to the experimental and control conditions. Their depressive tendencies and well-being were measured through standard scales at three intervals: pre-intervention, post-intervention and follow-up. RESULTS: The results revealed significant restoring and preserving capacity of self-affirmation for the well-being of the experimental group participants as compared to the control group. The main effects of conditions (experimental, control) and treatment intervals (pre, post, follow-up) were significant along with the interaction effects of conditions × treatment intervals. The significant differences in the mean well-being scores for pre-intervention, post-intervention and follow-up points of time showed the restoring and preserving capacity of self-affirmation intervention. CONCLUSIONS: The findings showed that self-affirmation helps to restore well-being as well as preserve it after a significant gap, which is evident in higher well-being mean scores of the experimental group taken at post-intervention and follow-up intervals. The positive effects of self-affirmation on well-being may have remained active even after the cessation of the intervention due to the underlying mechanisms of enhanced self-worth, positive values, inner strengths, positive attributions and interpersonal relationships.

Conceptualizing a novel Hybrid Decontamination System (HDS) based on UV/H2O2 treatment for the enhanced decontamination and reuse of N95 FFRs.

The ongoing Pandemic of COVID-19 caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) has severely stressed the worldwide healthcare system and has created dangerous shortages of personal protective equipment (PPE) including N95 filtering facepiece respirators (FFRs). Even though suppliers struggled to meet global demand for N95 masks at an unprecedented level, a shortage of FFR appears as a significant factor in the transmission of the disease to frontline workers. CDC, USA has mentioned that FFR decontamination and reuse may be necessary during times of shortage to ensure guaranteed availability. Hence present stressed condition faced by the healthcare sector seeks for an affordable decontamination strategy that can be replicated easily broadening the utility of FFR decontamination across a range of healthcare settings. After reviewing available literature on the various disinfection techniques that may be used for the decontamination of FFRs, a first of its kind, portable Hybrid Decontamination System/procedure has been conceptualized and designed. This system combines the disinfecting properties of both vaporous hydrogen peroxide (VHP) and ultra-violet C irradiation (UV C) to ensure maximum decontamination of N95 respirators. The instrument will be equipped with a hydrogen peroxide chamber and UV light source. Sterilization of the FFRs will be done through treatment with VHP followed by UV light treatment. The proposed system will allow the user to completely sterilize the FFRs in a time-efficient manner.

Evaluation of non-injury inoculation technique for assessing Sclerotinia stem rot (Sclerotinia sclerotiorum) in oilseed Brassica.

The field assessment technique to evaluate the plants with a fungal phytopathogen for their tolerance to the disease is one of the crucial steps in dissecting their genetic control and in developing the resistant crop varieties. The objective behind this study was to develop and evaluate a field-based non-injury method of inoculation technique for Sclerotinia stem rot (SSR) in oilseed Brassica, caused by Sclerotinia sclerotiorum (Lib.) de Bary. The non-injury method of screening technique involves stem inoculation using a five days old mycelial mat on potato dextrose agar (PDA) plug placed on the top of sterile water-soaked cotton pad firmly wrapped over the internodal region with parafilm at the basal portion of the stem (15-20 cm above the ground) in the field. Inoculation without injury substantiates the natural means of infection in the field and the use of moist cotton pad keeps humidity for longer to initiate infection even in case of adverse climatic conditions. Disease development on the inoculated stem was measured by the length and width of the lesion. The symptom appears with water-soaked lesion formation and spreading deeper and wider on the stem in >90% of inoculated plants. During the experiment, about 800 Brassica germplasms including their wild relatives were screened and evaluated for three consecutive years using near-natural (non-injury) method of disease inoculation in the field. The Inoculation severity index (ISI) obtained during these years at Pusa, New Delhi were significantly similar and correlated with the natural infection measured in terms of disease severity index (DSI) on selected germplasm in the sick plot at ICAR-DRMR, Bharatpur. The significant correlations obtained among the used Brassica lines that were earlier not subjected for natural screening suggest the potential of this technique in evaluating the breeding material for SSR before confirmation with natural infection in the field.

Draft genome of multiple resistance donor plant Sinapis alba: An insight into SSRs, annotations and phylogenetics.

BACKGROUND: Sinapis alba is a wild member of the Brassicaceae family reported to possess genetic resistance against major biotic and abiotic stresses of oilseed brassicas. However, the resistance nature of S. alba was not exploited generously due to the unavailability of usable genome sequences in public databases. Therefore, the present study was conducted to assemble the first draft genome from raw whole genome shotgun sequences with annotation and develop simple sequence repeat markers for molecular genetics and marker-assisted breeding. RESULTS: The raw genome sequences had 96x coverage on the Illumina platform with 170 Gbp data. The developed assembly by SOAPdenovo2 has ~459 Mbp genome size covered in 403,423 contigs with an average size of 1138.04 bp. The assembly was BLASTX with Arabidopsis thaliana which showed 32.9% positive hits between both plants. The top hit species distribution analysis showed the highest similarity with A. thaliana. A total of 809,597 GO level annotations were recorded after BLASTX results, and 34,012 sequences were annotated with different enzyme codes grouped under seven classes. The gene prediction tool AUGUSTUS identified 113,107 probable genes with an average size of 684 bp. The biochemical pathway annotation assigned 16,119 potential genes to 152 KEGG maps and 1751 enzyme codes. The development of potential SSRs from the de-novo assembly yielded 70731 unique primer pairs. Out of 159 randomly selected SSR markers for validation, 149 successfully amplified in S. alba. However, 10 SSR markers did not amplify during the validation experiment. CONCLUSION: The annotated genome assembly with a large number of SSRs was developed in the present study. To the best of our knowledge, this is the first report of S. alba genome assembly development, annotation, and SSRs mining to date. The data presented here will be a very important resource for future crop improvement programs, especially for resistant breeding.

Ultrafast removal of arsenic using solid solution of aero-gel based Ce1-XTixO2-Y oxide nanoparticles.

An aero-gel based solid solution of titanium and cerium oxide nanoparticles have been used for the first time for ultra fast and trace level removal of arsenic from water. The interconnected long range ordered mesoporous structure was observed from TEM analysis which has been verified as an essential facet for the fast removal of arsenic in this study. The HR-XRD spectra indicated the face centred cubic structure with Fm3¯m space group. Le-Bail refinement and Raman spectroscopy confirmed the formation of single phase solid solution of Ce1-XTixO2-Y oxide nanoparticles. The HR-XPS and FT-IR study indicated the surface complexation and partial oxidation of As(III) to As(V) via electron transfer mechanism by reduction of Ce(IV) to Ce(III) and Ti(IV) to Ti(III) simultaneously during adsorption process. The kinetics study demonstrated 99% removal of As(III) within 10 min of initiating the adsorption process. The effect of pH and interfering ions confirmed the wide range of applicability for solid solution of titania and cerium oxide nanoparticles over the different environmental conditions for the removal of arsenic. The adsorption capacity for our best adsorbent (Ce0.8Ti0.2O2-y) was found to be 2 × 105 mg kg-1 while the lowest concentration of water body system was 7 µg L-1 which is the minimum concentration of arsenic achieved by any metal oxide based adsorbent.

Aerobic biodegradation of HMX by Planomicrobium flavidum.

In this report, aerobic biodegradation of octahydro-1,3,5,7-tetranitro-1,3,5,7-tetrazocine or high melting explosive (HMX), a highly explosive chemical by Planomicrobium flavidum strain S5-TSA-19, an isolate from an explosive-contaminated soil, was investigated. The isolate S5-TSA-19 degraded 70% of HMX in 20 days during which time nitrite ion was produced with the subsequent formation of metabolites, viz. methylenedintramine and N-methyl-N,N'-dinitromethanediamine with molecular weights 136 Da and 149 Da, respectively. The degradation mechanism was found to follow first-order kinetics with a half-life of 11.55 days and formation of above intermediates indicate single nitrite elimination pathway. The proliferation of isolate S5-TSA-19 in the absence of nitramines indicates the cometabolic degradation of HMX. Isolate S5-TSA-19 can thus be used as futuristic microbe for degradation of HMX at explosive-contaminated site.

Surfactant-free one-pot synthesis of CeO2, TiO2 and Ti@Ce oxide nanoparticles for the ultrafast removal of Cr(vi) from aqueous media.

Cerium oxide (CeO2), titanium oxide (TiO2) and titanium oxide impregnated with cerium oxide (Ti@Ce oxide) nanoparticles were synthesized using a simple one-pot surfactant-free method. The synthesized adsorbents were tested against the removal of Cr(vi) from aqueous medium. Comprehensive characterization methods like BET, XRD, SEM, EDAX, HR-TEM, SAED, HR-XPS and FT-IR were performed at different stages of the adsorption process and synthesis. A N2-BET study revealed the large surface area (268 m2 g-1) and pore size (6.8 nm) of CeO2 nanoparticles, which decreased after impregnation of titania. An XRD study demonstrated the phase transformation of TiO2 from the anatase phase to the rutile phase after the impregnation with CeO2 by lowering the phase transformation temperature from >550 °C to 400 °C. Ti0.3@Ce0.7 oxide nanoparticles showed 81% removal of Cr(vi) within 2.5 min of initiating the adsorption process while more than 92% removal of Cr(vi) was achieved within 10 min of adsorption. A HR-XPS study indicated the dual oxidation states of ceria and titania metals, which helped to convert the more toxic Cr(vi) ions to less toxic Cr(iii) ions during the adsorption process. The adsorption pattern depicted the monolayer behavior of Cr(vi) obeying the Redlich-Peterson isotherm and followed pseudo second-order kinetics. An intraparticle diffusion model disclosed the surface and pore resistance diffusion of Cr(vi) on the surface of adsorbents.

Aero-gel assisted synthesis of anatase TiO2 nanoparticles for humidity sensing application.

Aero-gel based one-pot synthesis of anatase phase TiO2 nanoparticles having a high surface area of 125 m2 g-1 has been reported in this work. The humidity sensing perfomance of the obtained porous TiO2 nanoparticles exhibits a quick response (2 s) and fast recovery (1.5 s), negligible hysteresis (<1%) and good stability in the 11-98%RH range. The relationship between %RH and resistance was found to be linear while the sensitivity increases with increase in %RH.