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1.
J Chem Phys ; 159(18)2023 Nov 14.
Artigo em Inglês | MEDLINE | ID: mdl-37947512

RESUMO

The present report examines the utility and exactness of time-propagators derived from Fer expansion (FE). While the mathematical intricacies of the FE scheme are well established, the operational aspects of the same in time-evolution studies remain less explored and authenticated in physical problems of relevance. Through suitable examples, the operational inconsistencies observed in time-evolution studies based on the FE scheme are identified and corroborated through rigorous comparisons with simulations emerging from exact numerical methods. The limitations outlined seriously undermine the advantages associated with the FE scheme over other existing analytic methods.

2.
Phys Chem Chem Phys ; 25(43): 29747-29773, 2023 Nov 08.
Artigo em Inglês | MEDLINE | ID: mdl-37885428

RESUMO

The present report examines the nuances of analytic methods employed in the derivation of evolution operators in periodically driven quantum systems based on Floquet theorem. Specifically, time-propagators of the form, U(t) = P(t)e-iH̄t defined in the Hilbert space (of finite dimension), are derived through generalized multimodal expansion of the operators involved. While Floquet methods defined in the extended Hilbert space (of infinite dimension) have remained the method of choice for the description of time-evolution at non-stroboscopic time-intervals, the expansion schemes discussed do present an attractive option for similar studies in the standard Hilbert space. Nevertheless, the convergence criteria and suitability of such methods deserve formal validation in problems of experimental relevance. Employing examples comprising periodic Hamiltonians from magnetic resonance spectroscopy, the exactness of Floquet based time-propagators in the Schrödinger and interaction representation is discussed. Through rigorous comparisons between simulations emerging from analytic and exact numerical methods, the relative merits and demerits of different formulations of Floquet based methods are also discussed.

3.
Per Med ; 20(5): 417-424, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37811569

RESUMO

Epilepsy is characterized by repeated seizure activity. Valproate, a commonly used antiepileptic drug, shows large inter-individual variation in plasma valproic levels and causes many adverse drug reactions. Aim: To find the influence of CYP2C9*2 and *3 polymorphisms on valproate-associated adverse drug reactions and plasma valproic acid levels in people with epilepsy. Methods: We recruited 158 people with epilepsy (79 cases and 79 controls) from an epilepsy clinic. Steady-state plasma valproic acid levels were measured using liquid chromatography-mass spectrometry and genotyping of CYP2C9 variants was carried out with helps of RT-PCR. Results: The presence of a mutant heterozygous genotype showed an odds ratio (OR) of 2.82 (95% CI: 1.10-7.24) and the adjusted OR was 5.39 (95% CI: 1.69-17.16). There was no significant difference in steady-state plasma valproate concentration between genotypes. Conclusion: The presence of a mutant heterozygous CYP2C9 genotype possesses five-times the risk of developing adverse drug reactions to valproate in people with epilepsy.


Assuntos
Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos , Epilepsia , Humanos , Ácido Valproico/efeitos adversos , Citocromo P-450 CYP2C9/genética , Estudos de Casos e Controles , Epilepsia/tratamento farmacológico , Epilepsia/genética , Epilepsia/induzido quimicamente , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos/genética
4.
Phys Chem Chem Phys ; 25(27): 17877-17900, 2023 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-37382605

RESUMO

Quantifying the NMR spectra of spin I = 1/2 nuclei coupled to quadrupolar spins (nuclei with spin quantum number, S > 1/2) has remained an arduous task in solid-state magic angle spinning (MAS) NMR experiments. In particular, extraction of chemical shift anisotropy (CSA) tensors from line-shapes of spin I = 1/2 nuclei coupled to quadrupolar spin (S = 1) in MAS experiments has remained challenging owing to the simultaneous presence of both heteronuclear dipolar interactions and quadrupolar interactions. Unlike experiments that involve only spin-1/2 nuclei, both faster spinning frequencies and stronger decoupling field strengths on the quadrupolar spins are essential to average/minimize the contributions from heteronuclear dipolar interactions. To this end, a quantitative theory based on the concept of "effective fields" is proposed to deduce optimal conditions in experiments that involve simultaneous recoupling and decoupling of heteronuclear dipolar interactions. Through analytic expressions, the spectral frequencies and intensities observed in experiments are quantified and rigorously verified. Since extraction of molecular constraints in NMR experiments involves iterative fitting of experimental data, we believe that the analytic expressions derived would speed up and be beneficial in quantifying such experiments.

5.
Behav Brain Res ; 447: 114423, 2023 06 05.
Artigo em Inglês | MEDLINE | ID: mdl-37030545

RESUMO

Persicaria minor (P. minor) is a herbal plant with many uses in food, perfume, and the medical industry. P. minor extract contains flavonoids with antioxidant and anticholinesterase capacity, which could enhance cognitive functions. P. minor extract has been proven to enhance memory. However, its role in an animal model of chronic cerebral hypoperfusion (CCH), which resembles human vascular dementia, has yet to be explored. Therefore, the present study investigates the effects of chronic (14 days) administration of aqueous P. minor extract on different stages of learning and memory processes and the metabolic pathways involved in the chronic cerebral hypoperfused rats induced by the permanent bilateral occlusion of common carotid arteries (PBOCCA) surgery. Chronic treatment of P. minor extract at doses of 200 and 300 mg/kg, enhanced recognition memory of the PBOCCA rats. P. minor extract (200 mg/kg) was also found to restore the spatial memory impairment induced by CCH. A high dose (300 mg/kg) of the P. minor extract significantly increased the expression of both ACh and GABA neurotransmitters in the hippocampus. Further, distinctive metabolite profiles were observed in rats with different treatments. Three major pathways involved in the cognitive enhancement mechanism of P. minor were identified. The present findings demonstrated an improving effect of P. minor extract on memory in the CCH rat model, suggesting that P. minor extract could be a potential treatment for vascular dementia and Alzheimer's patients. P. minor is believed to improve cognitive deficits by regulating pathways involved in retinol, histidine, pentose, glucuronate, and CoA metabolism.


Assuntos
Isquemia Encefálica , Doenças das Artérias Carótidas , Demência Vascular , Ratos , Humanos , Animais , Ratos Sprague-Dawley , Demência Vascular/tratamento farmacológico , Isquemia Encefálica/complicações , Isquemia Encefálica/tratamento farmacológico , Hipocampo , Memória Espacial/fisiologia , Cognição , Aprendizagem em Labirinto , Modelos Animais de Doenças
6.
Poult Sci ; 102(2): 102318, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-36525748

RESUMO

The primary goal of this study was to investigate the effect of feeding White Leghorn hens graded levels of a docosahexaenoic acid (DHA)-rich microalgae oil (MAO) on productive performance and enrichment of eggs with very long-chain (VLC) omega-3 (n-3) polyunsaturated fatty acids (PUFA). Forty-nine-week-old hens (8 per diet) were fed the following diets for 28 d: 1) A corn-soybean meal-based diet with no supplemental oil (CON); 2) CON + 10 g/kg MAO; 3) CON + 20 g/kg MAO; 4) CON + 30 g/kg MAO; 5) CON + 40 g/kg MAO; 6) CON + 40 g/kg MAO + 20 g/kg high-oleic sunflower oil (HOSO); and 7) CON + 40 g/kg MAO + 40 g/kg HOSO. Diets 6 and 7 were included because we previously reported that co-feeding high-oleic acid oils with n-3 PUFA-containing oils attenuated egg yolk n-3 PUFA contents vs. feeding hens the n-3 oils alone. All data were collected on an individual hen basis. Egg VLC n-3 PUFA enrichment plateaued, in terms of statistical significance, at the 30 g/kg MAO level (266 mg/yolk). Hens fed 40 g/kg MAO had greatly attenuated measures of hen performance, marked liver enlargement, an altered ovarian follicle hierarchy, greatly lowered circulating triglyceride levels, and depressed hepatic expression of key genes involved in triglyceride synthesis and secretion. As compared to hens fed 40 g/kg MAO alone, feeding hens 40 g/kg MAO co-supplemented with HOSO (Diets 6 and 7) restored egg production, ovarian morphology, and all other measures of hen productive performance to CON levels, elevated plasma triglyceride levels, prevented liver enlargement, and increased the hepatic expression of key genes involved in triglyceride synthesis and secretion. In conclusion, MAO can greatly enrich hens' eggs with VLC n-3 PUFA, but its recommended dietary inclusion should not exceed 20 g/kg. This would allow for near-maximal yolk VLC n-3 PUFA enrichment without impairing hen productive performance, altering the ovarian follicle hierarchy or, based on the work of others, presumably imparting off-flavors in the egg.


Assuntos
Ácidos Graxos Ômega-3 , Microalgas , Animais , Feminino , Galinhas/metabolismo , Óleo de Girassol , Ração Animal/análise , Dieta/veterinária , Ácidos Graxos Ômega-3/metabolismo , Suplementos Nutricionais , Gema de Ovo/metabolismo , Fígado/metabolismo , Triglicerídeos/metabolismo , Monoaminoxidase/metabolismo
7.
Reproduction ; 165(3): 289-300, 2023 03 01.
Artigo em Inglês | MEDLINE | ID: mdl-36547400

RESUMO

In brief: The pathophysiology of the ovarian dysfunction encountered in broiler breeder hens remains poorly understood but is similar to a condition in women known as polycystic ovary syndrome. This study reveals that metformin may provide a cheap and effective method of improving ovarian function in broiler breeder hens. Abstract: Broiler breeder hens, the parent stock of commercial broiler chickens, have poor reproductive efficiency associated with aberrant and excessive recruitment of ovarian follicles which results in sub-optimal egg production, fertility, and hatchability. The reproductive dysfunction observed in these hens resembles polycystic ovary syndrome in women, a condition wherein metformin is prescribed as a treatment. The main objectives of this study were to determine the effect of metformin on body weight, abdominal fat pad weight, ovarian function, and plasma steroid hormone concentrations. Broiler breeder hens were treated with 0, 25, 50, or 75 mg/kg body weight of metformin mixed in the diet for 40 weeks (n = 45 hens/treatment; 2565 weeks of age). At 65 weeks of age, hens that received the highest dose of metformin had significantly lower body and abdominal fat pad weights (P < 0.05) than the control. Metformin treatment, at all levels, normalized the preovulatory and prehierarchical ovarian follicular hierarchy. Metformin (50 or 75 mg/kg body weight) significantly increased the total number of eggs laid per hen during the entire production period and these hens had significantly greater fertility and hatchability at 65 weeks of age compared to the control (P < 0.05). Metformin treatment at all levels altered the plasma profile of reproductive hormones, with significantly lower plasma testosterone concentrations and a decreased testosterone to androstenedione ratio in hens that received metformin (P < 0.05). Future studies should focus on the mechanisms underlying the beneficial effects of metformin in improving the reproductive efficiency of broiler breeder hens.


Assuntos
Galinhas , Síndrome do Ovário Policístico , Animais , Feminino , Humanos , Oviposição , Reprodução , Dieta/veterinária , Peso Corporal , Ração Animal/análise
8.
Phys Chem Chem Phys ; 24(47): 29092-29111, 2022 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-36440633

RESUMO

Understanding the evolution of nuclear spins subjected to radio-frequency (RF) pulses in periodically driven multi-level systems has remained a challenging problem in magnetic resonance. Here in this report, we focus on a formal description of the excitation of double-quantum (DQ) transitions in three-level systems. Through generalized time-propagators derived from Floquet theory, the excitation during a pulse at non-stroboscopic time intervals is analysed through expressions invoking the density operator formalism. In contrast to numerical simulations, the analytical expressions provide insights into the excitation phenomenon as well as facilitating the faster optimization of experiments and quantification of experimental data. Through rigorous comparison with simulations, the suitability and convergence criteria in the analytical methods are examined over a wide range of parameters (both internal and external) with appropriate examples.

9.
Front Physiol ; 13: 1000144, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36203937

RESUMO

Broiler breeder hens, the parent stock of commercial broiler chickens, are genetically selected for rapid growth. Due to a longer production period and the focus of genetic selection on superior carcass traits in their progeny, these hens have the propensity to gain excess adipose tissue and exhibit severe ovarian dysfunction, a phenotype that is similar to human polycystic ovary syndrome (PCOS). Metformin is an antihyperglycemic drug approved for type 2 diabetes that is prescribed off-label for PCOS with benefits on metabolic and reproductive health. An additional effect of metformin treatments in humans is modulation of gut microbiome composition, hypothesized to benefit glucose sensitivity and systemic inflammation. The effects of dietary metformin supplementation in broiler breeder hens have not been investigated, thus we hypothesized that dietary metformin supplementation would alter the gut microbiome of broiler breeder hens. Broiler breeder hens were supplemented with metformin at four different levels (0, 25, 50, and 75 mg/kg body weight) from 25 to 65 weeks of age, and a subset of hens (n = 8-10 per treatment group) was randomly selected to undergo longitudinal microbiome profiling with 16S rRNA sequencing. Metformin impacted the microbial community composition in 75 mg/kg metformin compared to controls (adjusted PERMANOVA p = 0.0006) and an additional dose-dependent difference was observed between 25 mg/kg and 75 mg/kg (adjusted PERMANOVA p = 0.001) and between 50 mg/kg and 75 mg/kg (adjusted PERMANOVA p = 0.001) but not between 25 mg/kg and 50 mg/kg (adjusted PERMANOVA p = 0.863). There were few differences in the microbiome attributed to hen age, and metformin supplementation did not alter alpha diversity. Bacteria that were identified as differentially relatively abundant between 75 mg/kg metformin treatment and the control, and between metformin doses, included Ruminococcus and members of the Clostridia family that have been previously identified in human trials of PCOS. These results demonstrate that metformin impacts the microbiome of broiler breeder hens in a dose-dependent manner and several findings were consistent with PCOS in humans and with metformin treatment in type 2 diabetes. Metformin supplementation is a potentially promising option to improve gut health and reproductive efficiency in broiler breeder hens.

10.
Reprod Fertil ; 3(2): 110-121, 2022 04 01.
Artigo em Inglês | MEDLINE | ID: mdl-35814942

RESUMO

Ad libitum: feeding in broiler breeder (BB) hens causes reduced egg production, lower fertility, and improper eggshell deposition. Restricted feeding (RF) is the only effective intervention available to normalize ovarian function and improve reproductive efficiency. This study aimed to assess the transcriptional changes in ovarian cortex of BB hens with free access to feed compared to those on a RF diet. RNA was isolated from the ovarian cortex of Cobb 500 pullets raised to 10 and 16 weeks of age on either a full-feeding (FF) or RF diet. Microarray analysis identified 386 differentially expressed genes between the two feeding groups at 16 weeks of age. Gene ontology enrichment identified overrepresentation of Neuroactive ligand-receptor interaction pathways, Cell adhesion molecules, Steroid hormone biosynthesis, and various KEGG pathways. From these groups, 46 genes were selected for follow-up validation by quantitative PCR. The findings show that 33 of the 46 genes had significantly different abundance by age and/or feeding level. Most of these genes were repressed in RF hens and belonged to the steroid biosynthesis and neuropeptide signaling groups. The VIPR2 receptor was higher in the FF group leading us to hypothesize that vasoactive intestinal peptide (VIP) is an important regulator of small cortical follicles. Culture of hen cortical follicles with VIP increased Star, an indication of increased steroidogenic activity, although did not elevate Cyp11a1. These results offer insights and suggest the possible mechanisms and pathways responsible for the increases in cortical follicle growth associated with excess feed intake in BB hens. Lay summary: Giving breeder hens unrestricted access to feed can lead to problems with their ovaries, including excessive growth of the ovary and reduced fertility. Giving a limited amount of feed is the only effective way to reduce this growth of the ovaries and improve fertility. This study aimed to assess the changes in the molecules that make proteins in the body in hens fed unrestricted and restricted diets. In the hens fed a limited amount of feed, there were more of one type of molecules, while there were more of another type in the ovaries of hens with unrestricted access to feed. These results show that how much a hen eats can alter the number of these molecules in the ovary and this could help us understand why their ovaries grow excessively and why their eggs are less fertile.


Assuntos
Galinhas , Ovário , Animais , Ingestão de Alimentos , Feminino , RNA Mensageiro , Esteroides
11.
Environ Sci Pollut Res Int ; 29(42): 64150-64161, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-35471763

RESUMO

The distribution and possible sources of particulate organic carbon (POC) and particulate nitrogen (PN) in seven mangroves ecosystems along the east and west coast of India were examined, to understand their contribution to coastal biogeochemistry. Suspended particulate matter (SPM) concentration in mangrove waters were about ~ 1.6-fold higher in west coast (Gulf of Kachchh (GOK), Mandovi-Zuari (MA-ZU) and Karwar-Kumta (KR-KU)], whereas the mean POC content in SPM along east coast [Sundarbans (SUN), Bhitarkanika (BHK), Coringa (COR) and Pichavaram-Muthupet (PI-MU)] was nearly two times higher than the west coast (1.97 ± 0.91% and 1.06 ± 0.29%), respectively. The results indicated that the influence of the land-based contaminants on the water quality parameters (dissolved oxygen, pH, salinity, nutrients and chlorophyll-a, etc.), which primarily regulated the distribution and transformation of organic carbon in these mangrove waters. Among the studied systems, an extremely high DOC/POC ratio (5.72 ± 1.64) with low pH and DO in COR waters clearly indicated the labile nature of the organic matter influenced by anthropogenic stress. Strong correlation between POC and PN indicated a similar origin in particulate organic matter. The ratios of POC/PN and POC/Chl-a showed significant spatial variation ranging from 5.5 to 18.7 and 126 to 1057, respectively. The results indicated that significant fraction of in-situ primary production contributed to particulate organic matter (POM) pool in all Indian mangrove waters except the GOK and the SUN waters, where sediment resuspension and mangrove derived organic matter were the dominant POM sources.


Assuntos
Ecossistema , Material Particulado , Carbono/análise , Clorofila/análise , Monitoramento Ambiental , Nitrogênio/análise , Oxigênio , Material Particulado/análise
12.
J Biomol Struct Dyn ; 40(4): 1490-1502, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-32996435

RESUMO

Gallic acid (PubChem CID: 370) and quercetin (PubChem CID: 5280343) are major phenolic compounds in many mangrove plants that have been related to health cure. In the present study, the active fractions namely gallic acid (1) and quercetin (2) were isolated from the methanolic extract of leaves of Ceriops tagal in a Tropical mangrove ecosystem of Andaman and Nicobar Island (ANI), India. The chemical structures were determined by spectroscopic analysis: Fourier-Transform Infrared spectroscopy (FT-IR), 1H, 13C Nuclear Magnetic Resonance (NMR) spectroscopy, and High-resolution mass spectrometry (HRMS). The anticancer activity of isolated compounds (1) and (2) were evaluated by in vitro assays against two human cancer cell lines namely, HeLa (Cervical) and MDA-MB231 (Breast) cancer cells revealed that IC50 values of gallic acid (HeLa: 4.179197 ± 0.45 µg/ml; MDA-MB231: 80.0427 ± 0.19 µg/ml at 24 h) and quercetin (HeLa: 99.914 ± 0.18 µg/ml; MDA-MB231: 18.288382 ± 0.12 µg/ml at 24 h), respectively. Antioxidant properties of gallic acid (1) and quercetin (2) are found to be IC50 value of 0.77 ± 0.41 µg/ml and 1.897 ± 0.81 µg/ml, respectively. Molecular docking results explained that gallic acid (1) and quercetin (2) showed estimated binding free energy (ΔG) of -5.4 and -6.9 kcal/mol towards drug target Bcl-B protein, respectively. The estimated inhibition constant (Ki) for these two molecules are 110 and 8.75 µM, respectively. The MD simulation additionally supported that quercetin molecule is significantly improved the structural stability of Bcl-B protein. The present study provides key insights about the importance of polyphenols, and thus leads to open the therapeutic route for anti-cancer drug discovery process.Communicated by Ramaswamy H. Sarma.


Assuntos
Quercetina , Rhizophoraceae , Antioxidantes/farmacologia , Ecossistema , Ácido Gálico/farmacologia , Humanos , Simulação de Acoplamento Molecular , Extratos Vegetais/química , Quercetina/farmacologia , Rhizophoraceae/química , Espectroscopia de Infravermelho com Transformada de Fourier
13.
J Biomol Struct Dyn ; 40(24): 13392-13411, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-34644249

RESUMO

SARS-CoV-2, a member of beta coronaviruses, is a single-stranded, positive-sense RNA virus responsible for the COVID-19 pandemic. With global fatalities of the pandemic exceeding 4.57 million, it becomes crucial to identify effective therapeutics against the virus. A protease, 3CLpro, is responsible for the proteolysis of viral polypeptides into functional proteins, which is essential for viral pathogenesis. This indispensable activity of 3CLpro makes it an attractive target for inhibition studies. The current study aimed to identify potential lead molecules against 3CLpro of SARS-CoV-2 using a manually curated in-house library of antiviral compounds from mangrove plants. This study employed the structure-based virtual screening technique to evaluate an in-house library of antiviral compounds against 3CLpro of SARS-CoV-2. The library was comprised of thirty-three experimentally proven antiviral molecules extracted from different species of tropical mangrove plants. The molecules in the library were virtually screened using AutoDock Vina, and subsequently, the top five promising 3CLpro-ligand complexes along with 3CLpro-N3 (control molecule) complex were subjected to MD simulations to comprehend their dynamic behaviour and structural stabilities. Finally, the MM/PBSA approach was used to calculate the binding free energies of 3CLpro complexes. Among all the studied compounds, Catechin achieved the most significant binding free energy (-40.3 ± 3.1 kcal/mol), and was closest to the control molecule (-42.8 ± 5.1 kcal/mol), and its complex with 3CLpro exhibited the highest structural stability. Through extensive computational investigations, we propose Catechin as a potential therapeutic agent against SARS-CoV-2. Communicated by Ramaswamy H. Sarma.


Assuntos
COVID-19 , Catequina , Humanos , SARS-CoV-2 , Catequina/farmacologia , Pandemias , Antivirais/farmacologia , RNA , Simulação de Acoplamento Molecular , Inibidores de Proteases/farmacologia
14.
Int J Mol Sci ; 22(24)2021 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-34947993

RESUMO

Type 1 diabetes (T1D) is characterized by hyperphagia, hyperglycemia and activation of the hypothalamic-pituitary-adrenal (HPA) axis. We have reported previously that daily leptin injections help to alleviate these symptoms. Therefore, we hypothesized that leptin gene therapy could help to normalize the neuroendocrine dysfunction seen in T1D. Adult male Sprague Dawley rats were injected i.v. with a lentiviral vector containing the leptin gene or green fluorescent protein. Ten days later, they were injected with the vehicle or streptozotocin (STZ). HPA function was assessed by measuring norepinephrine (NE) levels in the paraventricular nucleus (PVN) and serum corticosterone (CS). Treatment with the leptin lentiviral vector (Lepvv) increased leptin and insulin levels in non-diabetic rats, but not in diabetic animals. There was a significant reduction in blood glucose levels in diabetic rats due to Lepvv treatment. Both NE levels in the PVN and serum CS were reduced in diabetic rats treated with Lepvv. Results from this study provide evidence that leptin gene therapy in STZ-induced diabetic rats was able to partially normalize some of the neuroendocrine abnormalities, but studies with higher doses of the Lepvv are needed to develop this into a viable option for treating T1D.


Assuntos
Diabetes Mellitus Experimental/terapia , Diabetes Mellitus Tipo 1/terapia , Vetores Genéticos/administração & dosagem , Leptina/genética , Animais , Corticosterona/sangue , Diabetes Mellitus Experimental/induzido quimicamente , Diabetes Mellitus Experimental/genética , Diabetes Mellitus Experimental/metabolismo , Diabetes Mellitus Tipo 1/induzido quimicamente , Diabetes Mellitus Tipo 1/genética , Diabetes Mellitus Tipo 1/metabolismo , Modelos Animais de Doenças , Terapia Genética , Injeções Intravenosas , Lentivirus/genética , Masculino , Norepinefrina/metabolismo , Núcleo Hipotalâmico Paraventricular/metabolismo , Ratos , Ratos Sprague-Dawley
15.
J Chem Phys ; 155(10): 104102, 2021 Sep 14.
Artigo em Inglês | MEDLINE | ID: mdl-34525823

RESUMO

A prescription based on bimodal Floquet theory is proposed to describe the nuances of phase-modulated supercycled decoupling experiments in solids. The frequency dependent interaction frames relevant to a particular supercycle are identified to facilitate faster convergence of perturbation corrections to the derived effective Hamiltonians. In contrast to silico-based methods, the proposed analytic method offers an attractive platform for faster optimization of experiments in solids. Additionally, the relevance of supercycling at ultrafast spinning conditions is also discussed.

16.
Mar Pollut Bull ; 171: 112786, 2021 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-34371435

RESUMO

Strong conservation management needs comprehensive data on biodiversity. Rapid methods that document aquatic biodiversity or assess the health condition of an ecosystem remain scarce. Herein, we have performed a metagenomics study on environmental DNA (eDNA) collected from an urban backwater area - Muttukadu, located in the southeast coast of India. Shotgun metagenomics approach using Illumina®NextSeq500 sequencing yielded 88.4 million raw reads. The processed data was assigned as 80% prokaryotes, 0.4% eukaryotes, ~2% viruses, and ~17% remain unknown. This approach has the potential to identify small micro-eukaryote, unseen species from both estuarine and marine environments. We have identified 156 eukaryote organisms represented from 21 phyla and 112 families, including those that are of conservational significance and ecological importance. Furthermore, our data also demonstrated the presence of pathogenic microorganisms due to sewage mixing with the backwaters. Given its sensitivity, we suggest this approach for an initial assessment of biodiversity structure in an ecosystem for the biomonitoring program.


Assuntos
DNA Ambiental , Biodiversidade , Código de Barras de DNA Taxonômico , Ecossistema , Monitoramento Ambiental , Humanos , Índia
18.
Environ Sci Pollut Res Int ; 28(31): 42051-42069, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-33791968

RESUMO

Efficient nutrient cycling and adequate sediment bioavailable nutrient supply are considered to be the two most important factors regulating the high productivity and subsequent carbon sequestration by mangrove ecosystems. We assessed spatial variability and the possible regulating factors of sediment bioavailable nutrients (nitrogen (N) and phosphorus (P)) and surface water-dissolved nutrients (N, P and silicate (Si)) in the five ecologically important mangrove ecosystems along the east and west coast of India during dry season. Higher bioavailable nitrogen concentrations in the sediments were recorded in Coringa mangroves (36.27 ± 14.7 µg g-1) and Bhitarkanika (18.54 ± 5.9 µg g-1) mangroves in the east coast followed by Karnataka (15.51 ± 8.26 µg g-1), Goa, (10.18 ± 9.96 µg g-1) and Kerala (6.36 ± 5.05 µg g-1) mangroves in the west coast. The dissolved inorganic nutrients in the mangrove waters ranged between 5.1 and 220.9 µmol l-1 for N and 0.07 and 3.9 µmol l-1 for P. These results indicated that terrestrial inputs, in situ remineralization and prevalent anoxic conditions regulated sediment nutrient content in these ecosystems, whereas the higher ammonium in the sediments was attributed to the greater nutrient adsorption by finer particles. The stoichiometry of the bioavailable nutrients (N, P) in the mangrove sediments deviated drastically from the Redfield ratio, and strong P limitation was recorded in most of the ecosystems. The results highlighted the potential role of sediment particle size and physiochemical (salinity and pH) properties in regulating bioavailable nutrient dynamics in mangrove sediments.


Assuntos
Nitrogênio , Fósforo , Ecossistema , Monitoramento Ambiental , Sedimentos Geológicos , Índia , Nitrogênio/análise , Fósforo/análise
19.
Genes (Basel) ; 13(1)2021 12 23.
Artigo em Inglês | MEDLINE | ID: mdl-35052372

RESUMO

Ovarian cancer is the most lethal gynecological malignancy in women. Metformin intake is associated with a reduced incidence of ovarian cancer and increased overall survival rate. We determined the effect of metformin on sphere formation, extracellular matrix invasion, and transcriptome profile of ovarian cancer cells (COVCAR) isolated from ascites of chickens that naturally developed ovarian cancer. We found that metformin treatment significantly decreased sphere formation and invasiveness of COVCAR cells. RNA-Seq data analysis revealed 0, 4, 365 differentially expressed genes in cells treated with 0.5, 1, 2 mM metformin, respectively compared to controls. Transcriptomic and ingenuity pathway analysis (IPA) revealed significant downregulation of MMP7, AICDA, GDPD2, APOC3, APOA1 and predicted inhibition of upstream regulators NFKB, STAT3, TP53 that are involved in epithelial-mesenchymal transition, DNA repair, and lipid metabolism. The analysis revealed significant upregulation of RASD2, IHH, CRABP-1 and predicted activation of upstream regulators VEGF and E2F1 that are associated with angiogenesis and cell cycle. Causal network analysis revealed novel pathways suggesting predicted inhibition of ovarian cancer through master regulator ASCL1 and dataset genes DCX, SEMA6B, HEY2, and KCNIP2. In summary, advanced pathway analysis in IPA revealed novel target genes, upstream regulators, and pathways affected by metformin treatment of COVCAR cells.


Assuntos
Metformina/farmacologia , Neoplasias Ovarianas/tratamento farmacológico , Transcriptoma/efeitos dos fármacos , Animais , Ascite/tratamento farmacológico , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Galinhas , Regulação para Baixo/efeitos dos fármacos , Transição Epitelial-Mesenquimal/efeitos dos fármacos , Feminino , Ovário/efeitos dos fármacos , Transdução de Sinais/efeitos dos fármacos , Regulação para Cima/efeitos dos fármacos
20.
Reproduction ; 160(5): 659-672, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-33065544

RESUMO

The follicular hierarchy in broiler breeder chicken ovary is often deranged due to excessive ovarian follicular recruitment, resulting in a condition that resembles polycystic ovary syndrome (PCOS) in women. Metformin is widely prescribed to correct PCOS and has been shown to affect granulosa cell functions in humans and rodent models. The objectives of this study are to determine the effects of metformin on signal transduction pathways, gene expression related to steroidogenesis, and progesterone secretion from granulosa cells isolated from the most recently recruited preovulatory and prehierarchical follicles of broiler breeder chickens. Granulosa cells were treated with 0, 1, 10, or 20 mM of metformin in the presence of FSH. The abundance of pAMPK, pACC, pERK, and pAkt was determined by Western blotting. The expression of genes related to progesterone biosynthesis was quantified by qPCR. Progesterone concentrations in culture media were quantified by ELISA. Metformin treatment did not have an effect on the abundance of pAMPK and pACC in prehierarchical follicles but significantly decreased the abundance of pERK and pAkt in a dose-dependent manner in preovulatory and prehierarchical follicles. The expression of genes related to steroidogenesis such as FSHR, STAR, CYP11A1, HSD3B, and progesterone secretion was significantly decreased in response to metformin treatment in a dose-dependent manner. Our data suggest that metformin treatment attenuates progesterone secretion via AMPK-independent pathways in granulosa cells of prehierarchical and preovulatory follicles of broiler breeder hens. Further studies are required to determine if metformin administration could ameliorate ovarian dysfunction in obese broiler breeder hens.


Assuntos
Células da Granulosa/metabolismo , Lipogênese/efeitos dos fármacos , Metformina/farmacologia , Folículo Ovariano/metabolismo , Progesterona/metabolismo , Transdução de Sinais/efeitos dos fármacos , Animais , Galinhas , Feminino , Hormônio Foliculoestimulante/farmacologia , Células da Granulosa/efeitos dos fármacos , Hormônios/farmacologia , Folículo Ovariano/efeitos dos fármacos
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