Conformational changes in a flexible, encapsulated dicarboxylate: evidence from density functional theory simulations.

The dynamical behavior of the [Mo12O12S12(OH)12{O2C-(CH2)N-CO2}]2- complexes is analyzed via first-principles molecular dynamics simulations. Experimental X-ray data play the role of initial configurations for our search in the configuration space. We show that different stable and metastable conformers are possible, and these are thermally accessible at relatively low temperatures. This is the main outcome of our first-principles molecular dynamics approach in which the temperature allowing for thermal activation has been set to T = 500 K, which is consistent with the variable temperature 1H NMR spectra of these complexes in solution taken at comparable, although moderately lower, temperature. This implies that a relatively large manifold of folding configurations is available to the encapsulated guest species. Moreover, the high flexibility of both the host cage and the inserted guests allows for the accommodation of a rather wide variety of functional groups with potential applications in several fields.

Dynamic properties of a hexadecamolybdenum wheel: studies in solution and density functional theory calculations.

Variable temperature (1)H NMR studies of the host-guest complex [Mo(16)O(16)S(16)(OH)(16)(H(2)O)(4)(PDA)(2)](4-) (1 ; PDA(2-) = phenylenediacetate) previously carried out in D(2)O have revealed a complex behavior in solution, involving a gliding motion of both parallel phenyl rings of the PDA(2-) ligands. In the present work, we present new NMR spectra carried out in the aprotic solvent CD(3)CN, which allow the observation of the proton signals associated with the bridging hydroxo groups of the inorganic host. The new spectra provide detailed information about the concerted reorganization of the guest components, that is, PDA(2-) and water molecules. The existence of an equilibrium between two distinct isomers differing in the linking mode between the inorganic host and the two equivalent PDA(2-) ligands is evidenced. This equilibrium appears strongly dependent upon the temperature, leading to a complete inversion of the distribution between 300 and 226 K. The thermodynamic data related to the isomerization reaction have been determined (Delta(r)H = -50.5 kJ mol(-1) and Delta(r)S = -215 J mol(-1) K(-1)). Furthermore, at low temperature, one of the isomers exists in two conformations, only differing in the H-bond network involving the inner water molecules. Density functional theory calculations were carried out to push ahead the interpretations obtained from experiment, identify the isomers of 1, and specify the role and the positions of the guest water molecules. Among the various structures that have been calculated for 1, three fall in a narrow energy range and should correspond to the species characterized by variable-temperature (1)H NMR experiments in CD(3)CN. Finally, this study shows how the internal disposition of the ligands affects the ellipticity of the Mo(16) ring which varies from one isomer to the other in the 0.73-1 range and highlights solvation of the ring as one of the key parameters for the conformational design of these flexible host-guest systems.

Tuning the thermodynamic stability of oxothiomolybdenum wheels: crystal structures, studies in solution and DFT calculations.

The complexes [Mo12O12S12(OH)12(Muco)]2- (Muco2- = muconate, C6H4O4(2-)) and [Mo12,O12S12(OH)12(TMT)]2 (TMT2- = tetramethylterephthalate, C12H12O4(2-)) have been obtained from the condensation of the [Mo2O2S2]2+ building block in the presence of Muco2- and TMT2-, respectively. Both compounds were structurally characterized, revealing host-guest architectures with one or two encapsulated water molecules. 1H NMR spectra in DMSO and D2O showed that both complexes had an average symmetry higher than that in the solid state, due to changes in the distribution of encapsulated water molecules. The relative stabilities in water of the seven complexes encapsulating various di- or tricarboxylate guests, either rigid or non-rigid, have been determined. The stability scale obtained for the dianionic complexes is interpreted in relation with the rigidity or flexibility of the guests. A DFT study demonstrates that additional stabilization arises from the presence of inner hydrogen bonds involving 1, 2 or 3 water molecules, which even permit the extension of the H-bonds network to the first solvation sphere of the anion. DFT calculations were carried out on all investigated complexes as isolated or solvated anions and provide the sequence of the bond energies between the host and the guests, which is compared to the experimental data.

Cu-Pd-Cu and Cu-Pt-Cu linear frameworks: synthesis, magnetic properties, and theoretical analysis of two mixed-metal complexes of dipyridylamide (dpa), isostructural, and isoelectronic with [Cu3(dpa)4Cl2]+.

The synthesis and crystal structure of two heteronuclear compounds stabilized by four dipyridylamide (dpa) ligands is reported. Cu2Pd(dpa)4Cl2 (1) and Cu2Pt(dpa)4Cl2 (2) exhibit an approximate D4 symmetry and a linear metal framework. They are structurally similar to the homotrinuclear complexes M3(dpa)4L2 already characterized with various transition metals (M=Cr, Co, Ni, Cu, Rh, Ru). With 26 metal valence electrons, they are also isoelectronic to the oxidized form of the tricopper complex [Cu3(dpa)4Cl2]+ (3), previously characterized and investigated by Berry et al.10 The magnetic properties and the EPR spectra of 1 and 2 are reported. The results for 1 are interpreted in terms of a weak antiferromagnetic interaction (2J=-7.45 cm(-1) within the framework of the Heisenberg Hamiltonian H=-2JAB sAsB) between the Cu(II) magnetic centers. For 2, the antiferromagnetic interaction sharply decreases to <1 cm(-1). These properties are at variance with those of (3), for which a relatively strong antiferromagnetic interaction (2J=-34 cm(-1)) had been reported. DFT/UB3LYP calculations reproduce the decrease of the magnetic interaction from 3 to 1 and assign it to the role of the nonmagnetic metal in the transference of the superexchange coupling. However, the vanishing of the magnetic interaction in 2 could not be reproduced at this level of theory and is tentatively assigned to spin-orbit coupling.

Changing the oxothiomolybdate ring from an anionic to a cationic receptor.

The ionic recognition properties of neutral oxothiomolybdenum wheels can be changed from anionic to cationic through ionization of the internal aquo ligands. In the solid state, [Mo8O8S8(OH)10(H2O)]2- (1) interacts with two Cs+ cations to give a close supramolecular host-guest arrangement. Such interactions appear to be maintained in solution as a labile association.

A new generation of metal string complexes: structure, magnetism, spectroscopy, theoretical analysis, and single molecular conductance of an unusual mixed-valence linear [Ni5]8+ complex.

Two new linear pentanickel complexes [Ni5(bna)4(Cl)2][PF6]2 (1) and [Ni5(bna)4(Cl)2][PF6]4 (2; bna=binaphthyridylamide), were synthesized and structurally characterized. A derivative of 1, [Ni5(bna)4(NCS)2][NCS]2 (3), was also isolated for the purpose of the conductance experiments carried out in comparison with [Ni5(tpda)4(NCS)2] (4; tpda=tripyridyldiamide). The metal framework of complex 2 is a standard [Ni5]10+ core, isoelectronic with that of [Ni5(tpda)4Cl2] (5). Also as in 5, complex 2 has an antiferromagnetic ground state (J=-15.86 cm(-1)) resulting from a coupling between the terminal nickel atoms, both in high-spin sate (S=1). Complex 1 displays the first characterized linear nickel framework in which the usual sequence of NiII atoms has been reduced by two electrons. Each dinickel unit attached to the naphthyridyl moieties is assumed to undergo a one-electron reduction, whereas the central nickel formally remains NiII. DFT calculations suggest that the metal framework of the mixed-valence complex 1 should be described as intermediate between a localized picture corresponding to NiII-NiI-NiII-NiI-NiII and a fully delocalized model represented as (Ni2)3+-NiII-(Ni2)3+. Assuming the latter model, the ground state of 1 results from an antiferromagnetic coupling (J=-34.03 cm(-1)) between the two (Ni2)3+ fragments, considered each as a single magnetic centre (S=3/2). An intervalence charge-transfer band is observed in the NIR spectrum of 1 at 1186 nm, suggesting, in accordance with DFT calculations, that 1 should be assigned to Robin-Day class II of mixed-valent complexes. Scanning tunnelling microscopy (STM) methodology was used to assess the conductance of single molecules of 3 and 4. Compound 3 was found approximately 40% more conductive than 4, a result that could be assigned to the electron mobility induced by mixed-valency in the naphthyridyl fragments.

Host-guest adaptability within oxothiomolybdenum wheels: structures, studies in solution and DFT calculations.

The formation of host-guest cyclic architectures, built up through the self-condensation process of [Mo(2)O(2)S(2)](2+) oxothiocations around linear dicarboxylate ions such as adipate (Adip(2-)), suberate (Sub(2-)) and azelaate (Azel(2-)) anions is reported. The complexes [Mo(12)Adip](2-), [Mo(12)Sub](2-) and [Mo(14)Azel](2-) have been characterized in the solid state by X-ray diffraction and in solution by (1)H NMR in different solvents (D(2)O, DMF, DMSO and CD(3)CN). The host-guest dynamics appear to be dependent on the nature of the system and are mainly governed by mutual adaptability between the host and the guest. (1)H NMR DOSY experiments show systematic differences, either positive or negative between the experimental and calculated molecular weights which appear to be correlated with the charge of the anion. The relative stabilities of the twelve-membered rings containing the Adip(2-), Pim(2-) (pimelate) or Sub(2-) anions were determined experimentally and decrease according to the order [Mo(12)Adip](2-) > [Mo(12)Pim](2-) > [Mo(12)Sub](2-). The host-guest adaptability depends on the length of the carbon chain and gives rise to selective encapsulation processes. Finally, theoretical DFT investigations in the gas phase yielded conformations whose symmetry and geometrical parameters proved consistent with X-ray structures and (1)H NMR spectra recorded in DMSO or DMF. Energy calculation highlights the high flexibility of the ring showing that only 3.1 kJ mol(-1) accompanies the conformational change from circular to elliptical. The host-guest bond energy (Delta E) calculated for the Mo(12)-based clusters is consistent with the experimental stability scale, major variations being due to some constraints undergone by the central alkyl chain.

DFT modeling of sandwich complexes involving cationic palladium chains and polyenic or polycyclic aromatic hydrocarbons.

DFT calculations are reported on a series of one-dimensional palladium complexes with general formula [Pd(m)(C(2n)H(2n+2))(2)](2+) (m = 2-4, n = 2-8, n > or = m), in order to model and analyze the bonding in the series of organometallic sandwich compounds recently reported by the group of T. Murahashi and H. Kurosawa. The bonding interactions are elucidated, and the frontier orbitals involved are described as a function of the haptotropic conformation of the metal atoms, either di-hapto or tri-hapto. In both cases, the driving force to the complex organization is a strong donation interaction from the pi system of the hydrocarbons to an orbital with appropriate phase and composition, delocalized over the metal chain, and depopulated by the double oxidation process. No net bonding interaction can be characterized along the metal string, and the metal-metal distances are mainly governed by the hapticities of adjacent atoms. The energy associated with the formation of a complex is calculated with respect to its fragments, assumed either isolated or solvated. The results emphasize the stabilizing role of a large delocalization of the positive charge transferred to the hydrocarbons. This delocalization extends to the hydrocarbon regions not directly in contact with palladium and highlights the importance of these "inactive" regions in complexes made from diphenyl polyenes or polycyclic aromatic hydrocarbons. Finally, the bonding pattern deduced from calculations has been utilized to consider the feasibility of novel sandwich architectures, whose computed energy balance eventually proves similar to that of already existing compounds.

Influence of electron-attractor substituents on the magnetic properties of Ni(II) string complexes.

Density functional theory calculations carried out on the anionic Ni(II) chain complexes {trinickeltetrakis[2,6-bis(amido)pyridine]}2- and {trinickeltetrakis[N,N'-bis(sulfonyl)pyridyldiamido]}2- show that the electron-attractor character of the sulfonyl substituent modifies the basicity of the amido ligand ends so as to raise the electronic state of the underlying metal atom from low spin (S = 0) to high spin (S = 1). The computed elongation of the outermost Ni-N bonds with the grafting of SO2H substituents is in agreement with this interpretation.

Even-numbered metal chain complexes: synthesis, characterization, and DFT analysis of [Ni4(mu4-Tsdpda)4(H2O)2] (Tsdpda2- = N-(p-toluenesulfonyl)dipyridyldiamido), [Ni4(mu4-Tsdpda)4]+, and related Ni4 string complexes.

The synthesis and the X-ray structure of two complexes exhibiting a linear chain of four nickel atoms is reported, following Ni4(mu4-phdpda)4 (1), which had been characterized previously. [Ni4(mu4-Tsdpda)4(H2O)2], where H2Tsdpda is N-(p-toluenesulfonyl)dipyridyldiamine (2), is axially coordinated to two water molecules, at variance with 1. One-electron oxidation of 2 resulted in the loss of the axial ligands, yielding [Ni4(mu4-Tsdpda)4]+, [3]+, which was also structurally characterized. Finally, we report the structure of Ni4(mu4-DAniDANy)4 (4), a complex synthesized starting from the new ligand N,N'-bis-p-anisyl-2,7-diamino-1,8-naphthyridine. Magnetic measurements concluded that 4 is diamagnetic, like 1, whereas 2 is antiferromagnetic (-2J(14) = 80 cm(-)(1), using the Heisenberg Hamiltonian H = -2J(14) S(1).S(4)), as are other axially coordinated chains with an odd number of nickel atoms. DFT calculations are reported on these complexes in order to rationalize their electronic structure and their magnetic behavior. The magnetic properties of the [Ni4]8+ complexes are governed by the electronic state of the Ni(II) atoms, which may be either low-spin (S = 0), or high-spin (S = 1). DFT calculations show that the promotion to high spin of two Ni atoms in the chain, either external or internal, depends on the interplay between axial and equatorial coordination. The synergy between axial coordination and the presence of electron-withdrawing toluenesulfonyl substituents in 2 favors the promotion to the high-spin state of the terminal Ni atoms, thus yielding an antiferromagnetic ground state for the complex. This is at variance with complexes 1 and 4, for which the lowest quintet state results from the promotion to high spin of the internal nickel atoms, together with an important ligand participation, and is destabilized by 9 to 16 kcal mol(-1) with respect to the diamagnetic ground state.

Synthesis and characterization of octa- and hexanuclear polyoxomolybdate wheels: role of the inorganic template and of the counterion.

Eight new compounds based on [O3PCH2PO3]4- ligands and {MoV2O4} dimeric units have been synthesized and structurally characterized. Octanuclear wheels encapsulating various guests have been isolated with different counterions. With NH4+, a single wheel was obtained, as expected, with the planar CO32- guest, (NH4)12[(MoV2O4)4(O3PCH2PO3)4(CO3)2].24H2O (1a), while with the pyramidal SO32- guest, only the syn isomer (NH4)12[(MoV2O4)4(O3PCH2PO3)4(SO3)2].26H2O (2a) was characterized. The corresponding anti isomer was obtained with Na+ as counterions, Na12[(MoV2O4)4(O3PCH2PO3)4(SO3)2]39H2O (2b), and with mixed Na+ and NH4(+) counterions, Na+(NH4)11[(MoV2O4)4(O3PCH2PO3)4(SO3)2].13H2O (2d). With [O3PCH2PO3]4- extra ligands, the octanuclear wheel Li12(NH4)2[(MoV2O4)4(O3PCH2PO3)4(HO3PCH2PO3)2].31H2O (4a) was isolated with Li+ and NH4+ counterions and Li14[(MoV2O4)4(O3PCH2PO3)4(HO3PCH2PO3)2].34H2O (4c) as a pure Li+ salt. A new rectangular anion, formed by connecting two MoV dimers and two MoVI octahedra via methylenediphosphonato ligands with NH4+ as counterions, (NH4)10[(MoV2O4)2(MoVIO3)2(O3PCH2PO3)2(HO3PCH2PO3)2].15H2)O (3a), and Li9(NH4)2Cl[(MoV2O4)2(MoVIO3)2(O3PCH2PO3)2]. 22H2O (3d) as a mixed NH4+ and Li+ salt have also been synthesized. The structural characterization of the compounds, combined with a study of their behavior in solution, investigated by 31P NMR, has allowed a discussion on the influence of the counterions on the structure of the anions and their stability. Density functional theory calculations carried out on both isomers of the [(MoV2O4)4(O3PCH2PO3)4(SO3)2]12- anion (2), either assumed isolated or embedded in a continuum solvent model, suggest that the anti form is favored by approximately 2 kcal mol(-1). Explicit insertion of two solvated counterions in the molecular cavity reverses this energy difference and reduces it to less than 1 kcal mol(-1), therefore accounting for the observed structural versatility.

Discrete iridium pyridonate chains with variable metal valence: nature and energetics of the Ir-Ir bonding from DFT calculations.

The structure of the Ir(I) complex [Ir2(mu-OPy)2(CO)4] (Opy = 2-pyridonate) has been fully characterized in its head-to-head (A) configuration as a "dimer of dimers" AA in which two binuclear complexes are connected by means of a weak, but unsupported, iridium-iridium interaction (Ir(2)...Ir(2A) 2.9808(6) A). The head-to-tail isomer, referred to as B, was found in equilibrium with A in solution. It has been shown that this complex can be oxidized by diiodine to give iridium chains with highly selective configurations and general formula I-[Ir2(mu-OPy)2(CO)4]n-I (n = 1-3). The synthesis of IAI (1), of the isomers IAAI (2AA) and IABI (2AB), and of IABAI (3) is reported. DFT calculations have been carried out on A and B and on the known isomers of 1-3, as well as on two isomers of the hypothetic chain of eight Ir(1.25) atoms corresponding to n = 4. The stability of the metal chain is assigned to a 2-electron/2n-center sigma bond delocalized along the metal backbone and supplemented with a weak attractive interaction of the metallophilic type. Calculations confirm that further oxidation of the Ir chains corresponding to n > 1 by iodine, yielding the cleavage of one or two unsupported bond(s), is a highly exothermic process. The formation of the I-[Ir2(mu-OPy)2(CO)4]n-I chains is also computed to be exothermic, either highly for n = 1 or still significantly for n = 2 and 3. At variance with these results, the formation of an octanuclear chain is predicted to be no more than marginally exothermic (DeltaG = 1.7 kcal.mol(-1)), mainly because of interligand strain induced by the steric bulk of the amidate rings.

Tunable charge delocalization in dinickel quinonoid complexes.

When a 2,5-diamino-1,4-benzoquinonediimine C6H2(=NR)2(NHR)2 (2) is used as a bridging ligand, new dinickel(II) complexes [(acac)Ni[mu-C6H2(=NPh)4]Ni(acac)] (3a: R=Ph) and [(acac)Ni[mu-C6H2(=NCH2tBu)4]Ni(acac)] (3b: R=CH2tBu) are obtained; upon one-electron oxidation of these complexes delocalized mixed-valence compounds are formed. An X-ray diffraction study on 3b reveals equalization of the bond lengths within each of the ligand 6 systems and a lack of conjugation between them. The oxidized state in 3b+ involves both the bridging quinonoid ligand and the metal centers, with a major contribution coming from the bridging ligand. Electrochemical and spectroscopic methods were used to study the influence of the N-substituents of the tetranitrogen donor ligands 2. In this combined experimental and theoretical (DFT) study, it is also shown that the electronic structure within the dinickel system can be altered by addition of a coordinating ligand such as pyridine. The latter favors the high-spin configuration with semi-occupied metal-centered orbitals, leading to a metal-metal interaction in the mixed-valence Ni(II)-Ni(III) 3b+ system.

Metal "capture" by a heterotrimetalloligand, heterometallic d(10)-d(10) interactions, and unexpected iron-to-platinum silyl ligand migration: a combined experimental and theoretical study.

The heterotrinuclear chain complex Hg[Fe{Si(OMe)(3)}(CO)(3)(dppm-P)](2) (dppm = Ph(2)PCH(2)PPh(2)) 1 which has a transoid arrangement of the phosphine donors was used as a versatile chelating metallodiphosphine ligand owing to the easy rotation of its metal core about the Fe-Hg sigma-bonds. Its reaction with the labile Pt(0) olefin complex [Pt(C(7)H(10))(3)] yielded [HgPt{Si(OMe)(3)}Fe(2)(CO)(6){Si(OMe)(3)}(mu-dppm)(2)] 5 which resulted, after coordination of the dangling phosphine donors to Pt, from an unprecedented intramolecular rearrangement involving a very rare example of silyl ligand migration between two different metal centers, and the first one in metal cluster chemistry. The major structural differences observed between the heterometallic complexes obtained from 1 and d(10) Cu(I), Pd(0), or Pt(0) precursors have been established by X-ray diffraction. The bonding situation in the silyl migrated Pt complex 5 was analyzed and compared to those in the isoelectronic, but structurally distinct complexes obtained from Cu(I) and Pd(0) precursors, [Hg{Fe[Si(OMe)(3)](CO)(3)(mu-dppm)}(2)Cu](+) (2) and [Hg{Fe[Si(OMe)(3)](CO)(3)(mu-dppm)}(2)Pd] (4), respectively, by means of extended Hückel interaction diagrams. DFT calculations then allowed the energy minima associated with the three structures to be compared for 2, 4, and 5. All three minima are in close competition for the Pd complex 4, but silyl migration is favored by approximately 10 kcal mol(-)(1) for 5, mainly due to the more electronegative character of Pt with respect to Pd.

Highly Reduced Polyoxometalates: Ab Initio and DFT Study of [PMo8V4O40(VO)4](5)(.).

DFT and post Hartree-Fock calculations were carried out to characterize the electronic structure of the 10-electron-reduced [PMo8V4O40(VO)4](5)(-) polyoxometalate. This molecule may be viewed as a mixed-metal PMo8V4O40 Keggin structure capped with four VO units, in which the eight vanadiums form a ring. In mixed V/Mo clusters it is accepted that the first reductions occur at the V(5+) ions. The BP86 calculations on this modified Keggin anion reveal that the ground state is a septet with the six unpaired electrons delocalized over the eight V centers. The B3LYP calculations and especially the CASSCF technique modify the tendency of the BP86 method, thus reproducing the expected 8/2 distribution. The unpaired electrons residing in the eight vanadiums are antiferromagnetically coupled.

[Fe2(SR)2(mu-CO)(CNMe)6]2+ and analogues: a new class of diiron dithiolates as structural models for the H(ox)Air state of the fe-only hydrogenase.

Low-temperature oxidation of Fe(2)(S(2)C(n)H(2n)(CNMe)(6-x)(CO)x (n = 2, 3; x = 2, 3) affords a family of mixed carbonyl-isocyanides of the type [Fe(2)(S(2)C(n)H(2n)(CO)x(CNMe)(7-x)](2+). The degree of substitution is controlled by the RNC/Fe ratio, as well as the degree of initial substitution at iron, with tricarbonyl derivatives favoring more highly carbonylated products. The structures of the monocarbonyl derivatives [Fe(2)(S(2)C(n)H(2n))(mu-CO)(CNMe)(6)](PF(6))(2) (n = 2,3) established crystallographically and spectroscopically, are quite similar, with Fe---Fe distances of ca. 2.5 A, although the mu-CO is unsymmetrical in the propanedithiolate derivative. Isomeric forms of [Fe(2)(S(2)C(3)H(6))(CO)(CNMe)(6)](PF(6))(2) were characterized where the CO is bridging or terminal, the greatest structural difference being the 0.1 A elongation of the Fe---Fe distance when MeNC (vs CO) is bridging. In the dicarbonyl species, [Fe(2)(S(2)C(2)H(4))(mu-CO)(CO)(CNMe)(5)](PF(6))(2), the terminal CO ligand is situated at one of the basal sites, not trans to the Fe---Fe vector. Oxidation of Fe(2)(S(2)C(2)H(4))(CNMe)(3)(CO)(3) under 1 atm CO gives the deep pink tricarbonyl [Fe(2)(S(2)C(2)H(4))(CO)(3)(CNMe)(4)](PF(6))(2). DFT calculations show that a bridging CO or MeNC establishes a 3-center, 2-electron bond within the two Fe(II) centers, which would otherwise be nonbonding.