Presence of CRISPR CAS-Like Sequences as a Proposed Mechanism for Horizontal Genetic Exchanges between Trichomonas vaginalis and Its Associated Virus: A Comparative Genomic Analysis with the First Report of a Putative CRISPR CAS Structures in Eukaryotic Cells.

Introduction: Trichomonas vaginalis genome is among the largest genome size and coding capacities. Combinations of gene duplications, transposon, repeated sequences, and lateral gene transfers (LGTs) have contributed to the unexpected large genomic size and diversity. This study is aimed at investigating genomic exchange and seeking for presence of the CRISPR CAS system as one of the possible mechanisms for some level of genetic exchange. Material and Methods. In this comparative analysis, 398 publicly available Trichomonas vaginalis complete genomes were investigated for the presence of CRISPR CAS. Spacer sequences were also analyzed for their origin using BLAST. Results: We identified a CRISPR CAS (Cas3). CRISPR spacers are highly similar to transposable genetic elements such as viruses of protozoan parasites, especially megavirals, some transposons, and, interestingly, papillomavirus and HIV-1 in a few cases. Discussion. There is a striking similarity between the prokaryotes/Archaean CRISPR and what we find as eukaryotic CRISPR. About 5-10% of the 398 T. vaginalis possess a CRISPR structure. Conclusion: According to sequences and their organization, we assume that these repeated sequences and spacer, along with their mentioned features, could be the eukaryotic homolog of prokaryotes and Archaean CRISPR systems and may involve in a process similar to the CRISPR function.

Potential Role of Lactobacillus and Bifidobacterium for Preventing Kidney Stones.

BACKGROUND: A probiotic is a living microorganism that promotes host health when grown under appropriate conditions. Kidney stones are one of the universal agonizing diseases that have increased dramatically in recent years. One of the causes of this disease is hyperoxaluria (HOU), which is known to be an important factor in the formation of oxalate stones and is manifested by high levels of oxalate in the urine. In addition, about 80% of kidney stones contain oxalate, and decomposition of this material by microbes is one way to dispose of it. METHODS: Therefore, we examined a bacterial mixture containing Lactobacillus plantarum, Lactobacillus casei, Lactobacillus acidophilus, and Bifidobacterium longum to prevent of oxalate production in Wistar rats with kidney stones. We divided the rats into 6 groups defined in the method. RESULTS: The results of this study clearly show a decrease in urinary oxalate levels by exogenous means by L. plantarum, L. casei, L. acidophilus, and B. longum at the beginning of the experiment. Therefore, these bacteria can be used to control and prevent the formation of kidney stones. CONCLUSIONS: However, further studies should be conducted on the effects of these bacteria, and it is recommended to identify the gene responsible for the degradation of oxalate in order to develop a new probiotic.

Synthesis and optimization of emission characteristics of water-dispersible ag-in-s quantum dots and their bactericidal activity.

Developing novel aqueous-soluble quantum dots (QDs) can create new opportunities for better biological utilization. In the present work, novel, high emissive and biocompatible N-acetyl-L-cysteine-capped Ag-In-S QDs (as an I-III-VI structure) were prepared in a facile and straightforward way. The dominance of the strong confinement regime was observed due to the very small size of nanoparticles, which was smaller than their excitonic Bohr radius. To prepare reproducible Ag-In-S QDs, their emission characteristics were improved by optimizing the experimental variables which resulted in the enhancement of their emission quantum yield to near 32% at 615 nm. The absorption and emission results support the contribution of band edge-independent radiative recombination pathways for charge carriers in the prepared Ag-In-S QDs. The possible mechanisms for such donor-acceptor recombination were also discussed. To explore the antibacterial ability of the Ag-In-S QDs, their bactericidal activity was evaluated against different types of Gram-positive (Staphylococcus aureus and Bacillus subtilis) and Gram-negative (Escherichia coli and Salmonella enterica) bacteria. Precise measurements confirmed a remarkable bactericidal activity of Ag-In-S QDs against the different pathogenic bacteria even at low concentration of QDs (15 µg/mL). It was found that the QDs are more effective on Gram-negative bacteria. While the preparation method was simple and cost-effective, the as-synthesized QDs were highly emissive and stable with significant antibacterial activity. This demonstrates the great potential of present Ag-In-S QDs for future hygienic and medical purposes.

Aqueous-based synthesis of Cd-free and highly emissive Fe-doped ZnSe(S)/ZnSe(S) core/shell quantum dots with antibacterial activity.

The effective insertion of intentional impurities in direct aqueous preparation of doped QDs still needs a chemical route with well-designed strategy. The present work reports a facile, one-pot, and aqueous-based method for green synthesis of Fe-doped ZnSe(S)/ZnSe(S) core/shell QDs with improved emission intensity. In the proposed strategy, by using a sulfur rich ZnSe(S) shell, we can provide a wider band gap shell with low structural defects in the interface between core and shell. Utilization of combined co-nucleation and growth doping strategies along with increasing the shell refluxing time all are the chemo-physical tactics which led to high intensity dopant-related emission. The antibacterial activity of the as-prepared doped core/shell QDs was investigated using agar disk diffusion method. The results show, these QDs have a significant antibacterial activity against different pathogenic bacteria comparing with the conventional antibiotics. The facility of suggested aqueous route for reaching a dopant emission, the bio-compatibility and considerable antibacterial characteristics of present QDs, nominate them as good candidates in further biological applications.

Anti-biofilm Properties of Peganum harmala against Candida albicans.

OBJECTIVES: Vaginitis still remains as a health issue in women. It is notable that Candida albicans producing biofilm is considered a microorganism responsible for vaginitis with hard to treat. Also, Peganum harmala was applied as an anti fungal in treatment for many infections in Iran. Therefore, this study goal to investigate the role of P. harmala in inhibition of biofilm formation in C. albicans. METHODS: So, 27 C. albicans collected from women with Vaginitis, then subjected for biofilm formation assay. P. harmala was applied as antibiofilm formation in C. albicans. RESULTS: Our results demonstrated that P. harmala in concentration of 12 µg/ml easily inhibited strong biofilm formation; while the concentrations of 10 and 6 µg/ml inhibited biofilm formation in moderate and weak biofilm formation C. albicans strains, respectively. CONCLUSION: Hence, the current study presented P. harmala as antibiofilm herbal medicine for C. albicans; but in vivo study suggested to be performed to confirm its effectiveness.

Antioxidant activity of different parts of Pistacia khinjuk Stocks fruit and its correlation to phenolic composition.

The fruits of Pistacia khinjuk Stocks were collected from Ilam province, Iran. The aim of this study was to analyse antioxidant capacity and phenolic composition of different parts of P. khinjuk fruit. The antioxidant capacity of extracts was measured using different assays: ferric reducing ability of plasma, 2,2-diphenyl-1-picrylhydrazyl and nitric oxide radical scavenging. The phenolic composition of P. khinjuk fruit is reported for the first time. Amongst different parts of the fruit analysed in this study, hull extract contained the highest total phenolic and flavonoid contents. We observed a high correlation between different antioxidant activity and total phenolic and flavonoid contents. Therefore, antioxidant capacity can be related to total phenolic and flavonoid contents. A correlation analysis revealed that ascorbic acid, gallic acid, rutin, caffeic acid, ferulic acid and sinapic acid were the phenolic compounds mainly responsible for antioxidant power of the fruit extracts.

Antioxidant capacity and phenolic composition of leaves from 10 Bene (Pistacia atlantica subsp. kurdica) genotypes.

Leaves of 10 Bene genotypes were collected from six provinces (West Azerbaijan, Kurdistan, Kermanshah, Ilam, Hamedan and Lorestan) in Iran. This study was carried out to better characterise the total phenolic and flavonoid contents, antioxidant capacity and phenolic composition, as well as to evaluate the correlation between content of phenolic compounds and antioxidant activity in 10 genotypes of Bene. The antioxidant activity of leaf extracts was measured using different assays: ferric reducing antioxidant power, nitric oxide radical scavenging and 2,2-diphenyl-1-picrylhydrazyl. The results indicated that the antioxidant capacity can be related to total phenolic and flavonoid content, so that among all the genotypes studied here, the highest and the lowest phenolic content and antioxidant activity were observed in B2 and B10 genotypes, respectively. Analysing the phenolic composition using high performance liquid chromatography, caffeic acid, vanillic acid, ferulic acid and sinapic acid were found in all investigated genotypes.