Phylogenetic placement of Cibicidoides wuellerstorfi (Schwager, 1866) from methane seeps and non-seep habitats on the Pacific margin.

Benthic foraminifera are among the most abundant groups found in deep-sea habitats, including methane seep environments. Unlike many groups, no endemic foraminiferal species have been reported from methane seeps, and to our knowledge, genetic data are currently sparse for Pacific deep-sea foraminifera. In an effort to understand the relationships between seep and non-seep populations of the deep-sea foraminifera Cibicidoides wuellerstorfi, a common paleo-indicator species, specimens from methane seeps in the Pacific were analyzed and compared to one another for genetic similarities of small subunit rDNA (SSU rDNA) sequences. Pacific Ocean C. wuellerstorfi were also compared to those collected from other localities around the world (based on 18S gene available on Genbank, e.g., Schweizer et al., 2009). Results from this study revealed that C. wuellerstorfi living in seeps near Costa Rica and Hydrate Ridge are genetically similar to one another at the species level. Individuals collected from the same location that display opposite coiling directions (dextral and sinstral) had no species level genetic differences. Comparisons of specimens with genetic information available from Genbank (SSU rDNA) showed that Pacific individuals, collected for this study, are genetically similar to those previously analyzed from the North Atlantic and Antarctic. These observations provide strong evidence for the true cosmopolitan nature of C. wuellerstorfi and highlight the importance of understanding how these microscopic organisms are able to maintain sufficient genetic exchange to remain within the same species between seep and non-seep habitats and over global distances.

Two apparently unrelated groups of symbiotic annelids, Nautiliniellidae and Calamyzidae (Phyllodocida, Annelida), are a clade of derived chrysopetalid polychaetes.

Nautiliniellidae Miura and Laubier, 1989 is a small family of marine polychaetes with 20 currently described species in 11 genera, most of which are known to live symbiotically in the mantle cavity of bivalves, mainly from cold seeps and hydrothermal vents, while Calamyzidae (Hartmann-Schröder, 1971) including only one described species, Calamyzas amphictenicola Arwidsson 1932 lives as an ectoparasite on ampharetid polychaetes in Swedish waters. Nautiliniellidae and Calamyzidae have both been considered to belong to Phyllodocida, but the few phylogenetic studies including these taxa have found their positions unstable. The internal relationships within Nautiliniellidae are also poorly understood. Using molecular information from both nuclear and mitochondrial genes and morphological data we assessed the systematic placement of Nautiliniellidae (seven species; collected from Pacific hydrothermal vents and cold seeps and one from Atlantic waters) and Calamyzas amphictenicola. Our results show that C. amphictenicola and Nautiliniellidae formed a well-supported clade that is nested within Chrysopetalidae, a free-living group of polychaetes. The chrysopetalid genus Vigtorniella Kiseleva 1992; a bacterial mat grazer found at methane seeps, anoxic basins and whalefalls, formed a paraphyletic grade with respect to the Nautiliniellidae-Calamyzas clade. The internal relationships within the Nautiliniellidae-Calamyzas clade as well as the relationships with their hosts are also examined. As a result we synonymize Calamyzidae and Nautiliniellidae with Chrysopetalidae, with the last as the oldest available family-group name. Within Chrysopetalidae we refer to the subfamilies Chrysopetalinae Ehlers 1864; Dysponetinae Aguado, Nygren & Rouse, herein; and Calamyzinae Hartmann-Schröder, 1971. Calamyzinae contains C. amphictenicola, all taxa formerly in Nautiliniellidae, and the chrysopetalid genus Vigtorniella.

Bone-eating Osedax females and their 'harems' of dwarf males are recruited from a common larval pool.

Extreme male dwarfism occurs in Osedax (Annelida: Siboglinidae), marine worms with sessile females that bore into submerged bones. Osedax are hypothesized to use environmental sex determination, in which undifferentiated larvae that settle on bones develop as females, and subsequent larvae that settle on females transform into dwarf males. This study addresses several hypotheses regarding possible recruitment sources for the males: (i) common larval pool--males and females are sampled from a common pool of larvae; (ii) neighbourhood--males are supplied by a limited number of neighbouring females; and (iii) arrhenotoky--males are primarily the sons of host females. Osedax rubiplumus were sampled from submerged whalebones located at 1820-m and 2893-m depths in Monterey Bay, California. Immature females typically did not host males, but mature females maintained male 'harems' that grew exponentially in the number of males as female size increased. Allozyme analysis of the females revealed binomial proportions of nuclear genotypes, an indication of random sexual mating. Analysis of mitochondrial DNA sequences from the male harems and their host females allowed us to reject the arrhenotoky and neighbourhood hypotheses for male recruitment. No significant partitioning of mitochondrial diversity existed between the male and female sexes, or between subsamples of worms collected at different depths or during different years (2002-2007). Mitochondrial sequence diversity was very high in these worms, suggesting that as many as 10(6) females contributed to a common larval pool from which the two sexes were randomly drawn.

Acquisition of dwarf male "harems" by recently settled females of Osedax roseus n. sp. (Siboglinidae; Annelida).

After the deployment of several whale carcasses in Monterey Bay, California, a time-series analysis revealed the presence of a new species of Osedax, a genus of bone-eating siboglinid annelids. That species is described here as Osedax roseus n. sp. It is the fifth species described since the erection of this genus and, like its congeners, uses a ramifying network of "roots" to house symbiotic bacteria. In less than 2 months, Osedax roseus n. sp. colonized the exposed bones of a whale carcass deposited at 1018-m depth, and many of the females were fecund in about 3 months post-deployment. As with other Osedax spp., the females have dwarf males in their tube lumens. The males accrue over time until the sex ratio is markedly male-biased. This pattern of initial female settlement followed by gradual male accumulation is consistent with the hypothesis that male sex may be environmentally determined in Osedax. Of the previously described species in this genus, Osedax roseus n. sp. is most similar to O. rubiplumus, but it has several anatomical differences, as well as much smaller females, dwarf males, and eggs. Osedax roseus n. sp. is markedly divergent (minimally 16.6%) for mitochondrial cytochrome oxidase subunit I (mtCOI) sequences from any other Osedax species.

Prediction of retail product and trimmable fat yields from the four primal cuts in beef cattle using ultrasound or carcass data.

The most widely used system to predict percentage of retail product from the four primal cuts of beef is USDA yield grade. The purpose of this study was to determine whether routine ultrasound measurements and additional rump measurements could be used in place of the carcass measurements used in the USDA yield grade equation to more accurately predict the percentage of saleable product from the four primals. This study used market cattle (n = 466) consisting of Angus bulls, Angus steers, and crossbred steers. Live animal ultrasound measures collected within 7 d of slaughter were 1) scan weight (SCANWT); 2) 12th- to 13th-rib s.c. fat thickness (UFAT); 3) 12th- to 13th-rib LM area (ULMA); 4) s.c. fat thickness over the termination of the biceps femoris in the rump (URFAT; reference point); 5) depth of gluteus medius under the reference point (URDEPTH); and 6) area of gluteus medius anterior to the reference point (URAREA). Traditional carcass measures collected included 1) HCW; 2) 12th-to 13th-rib s.c. fat thickness (CFAT); 3) 12th- to 13th-rib LM area (CLMA); and 4) estimated percentage of kidney, pelvic, and heart fat (CKPH). Right sides of carcasses were fabricated into subprimal cuts, lean trim, fat, and bone. Weights of each component were recorded, and percentage of retail product from the four primals was expressed as a percentage of side weight. A stepwise regression was performed using data from cattle (n = 328) to develop models to predict percentage of retail product from the four primals based on carcass measures or ultrasound measures, and comparisons were made between the models. The most accurate carcass prediction equation included CFAT, CKPH, and CLMA (R2 = 0.308), whereas the most accurate live prediction equation included UFAT, ULMA, SCANWT, and URAREA (R2 = 0.454). When these equations were applied to a validation set of cattle (n = 138), the carcass equation showed R2 = 0.350, whereas the ultrasound data showed R2 = 0.460. Ultrasound measures in the live animal were potentially more accurate predictors of retail product than measures collected on the carcass.

Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.

The genome sequence of the genetically tractable, mesophilic, hydrogenotrophic methanogen Methanococcus maripaludis contains 1,722 protein-coding genes in a single circular chromosome of 1,661,137 bp. Of the protein-coding genes (open reading frames [ORFs]), 44% were assigned a function, 48% were conserved but had unknown or uncertain functions, and 7.5% (129 ORFs) were unique to M. maripaludis. Of the unique ORFs, 27 were confirmed to encode proteins by the mass spectrometric identification of unique peptides. Genes for most known functions and pathways were identified. For example, a full complement of hydrogenases and methanogenesis enzymes was identified, including eight selenocysteine-containing proteins, with each being paralogous to a cysteine-containing counterpart. At least 59 proteins were predicted to contain iron-sulfur centers, including ferredoxins, polyferredoxins, and subunits of enzymes with various redox functions. Unusual features included the absence of a Cdc6 homolog, implying a variation in replication initiation, and the presence of a bacterial-like RNase HI as well as an RNase HII typical of the Archaea. The presence of alanine dehydrogenase and alanine racemase, which are uniquely present among the Archaea, explained the ability of the organism to use L- and D-alanine as nitrogen sources. Features that contrasted with the related organism Methanocaldococcus jannaschii included the absence of inteins, even though close homologs of most intein-containing proteins were encoded. Although two-thirds of the ORFs had their highest Blastp hits in Methanocaldococcus jannaschii, lateral gene transfer or gene loss has apparently resulted in genes, which are often clustered, with top Blastp hits in more distantly related groups.

Osedax: bone-eating marine worms with dwarf males.

We describe a new genus, Osedax, and two new species of annelids with females that consume the bones of dead whales via ramifying roots. Molecular and morphological evidence revealed that Osedax belongs to the Siboglinidae, which includes pogonophoran and vestimentiferan worms from deep-sea vents, seeps, and anoxic basins. Osedax has skewed sex ratios with numerous dwarf (paedomorphic) males that live in the tubes of females. DNA sequences reveal that the two Osedax species diverged about 42 million years ago and currently maintain large populations ranging from 10(5) to 10(6) adult females.

Use of ultrasound to predict body composition changes in steers at 100 and 65 days before slaughter.

Steers from research crossbreeding projects (n = 406) were serially scanned using real-time ultrasound at 35-d intervals from reimplant time until slaughter. Cattle were evaluated for rump fat depth, longissimus muscle area (ULMA), 12th-rib fat thickness (UFAT), and percentage of intramuscular fat (IMF) to determine the ability of ultrasound to predict carcass composition at extended periods before slaughter. Additional background information on the cattle, such as live weight, ADG, breed of sire, breed of dam, implant, and frame score was also used. Carcass data were collected by trained personnel at "chain speed," and samples of the 12th-rib LM were taken for ether extract analysis. Simple correlation coefficients showed positive relationships (P < 0.01) between ultrasound measures taken less than 7 d before slaughter and carcass measures: ULMA and carcass LM area (CLMA, r = 0.66); UFAT and carcass 12th-rib fat thickness (CFAT, r = 0.74); and IMF and carcass numeric marbling score (r = 0.61). The same correlation coefficients for ultrasound measures taken 96 to 105 d before slaughter and carcass values (P < 0.01) were 0.52, 0.58, and 0.63, respectively. Steers were divided into source-verified and nonsource-verified groups based on the level of background information for each individual. Regression equations were developed for the carcass measurements; 46% of the variation could be explained for CLMA and 44% of CFAT at reimplant time, 46% of the variation in quality grade and 42% of the variation in yield grade could be explained. Significant predictors of quality grade were IMF (P < 0.001), natural log of 12th-rib fat thickness (LUFAT, P < 0.001), and ADG (P < 0.01), whereas LUFAT (P < 0.001), ULMA (P < 0.01), live weight (P < 0.001), hip height (P < 0.001), and frame score (P < 0.001) were significant predictors of yield grade. Regressions using ultrasound data taken 61 to 69 d before slaughter showed increasing R2. Live ultrasound measures at reimplant time are a viable tool for making decisions regarding future carcass composition.

Partitioning variances of growth in ultrasound longissimus muscle area measures in Angus bulls and heifers.

The objective of the study was to estimate variance components, heritability, and repeatability of ultrasound longissimus muscle area (ULMA) measures. Data included 4,653 serial ULMA measures from 882 purebred Angus bulls and heifers. Animals were born over a 4-yr period from 1998 to 2001. Each year, bulls and heifers were ultrasonically scanned four to eight times, with a 4- to 6-wk interval between scans. Initially, data were subdivided by scan session across years and were analyzed in a multitrait model (MTM). Data pooled across years and scan session were then analyzed using random regression models (RRM) to estimate trends in genetic parameter estimates. Additive direct genetic variance increased with advancing scan session ranging from 8.67 cm4 at the first scan (mean age = 35 wk) to a maximum of 19.48 cm4 at the sixth scan (mean age = 56 wk). Heritability of ULMA increased from 0.35 at first scan to a maximum of 0.48 at the fourth scan (mean age = 50 wk). Additive direct genetic variance and heritability values at about 1 yr of age (fifth scan) were 18.24 cm4 and 0.45, respectively. Estimates from RRM also showed an increase in sigma(a)2 and h2 with age. Trends in sigma(pe)2 estimates, although tending to fluctuate, also increased with age. Additive direct genetic variance at 1 yr of age ranged from 15.8 cm4 to 17.0 cm4 for the different models. Heritability of yearling ULMA measures ranged from 0.40 to 0.42 and repeatabilities ranged from 0.80 to 0.84. For the range of ages used in the current study, both MTM and RRM showed close to maximum heritability values at around 1 yr of age. Therefore, phenotypic differences in yearling ULMA between Angus cattle are better indicators of genetic differences than earlier measurements. Angus breeders could, therefore, use ULMA measures made at around 1 yr of age to select next generation parents.

Prediction of retail product weight and percentage using ultrasound and carcass measurements in beef cattle.

Data from 534 steers representing six sire breed groups were used to develop live animal ultrasound prediction equations for weight and percentage of retail product. Steers were ultrasonically measured for 12th-rib fat thickness (UFAT), rump fat thickness (URPFAT), longissimus muscle area (ULMA), and body wall thickness (UBDWALL) within 5 d before slaughter. Carcass measurements included in USDA yield grade (YG) and quality grade calculations were obtained. Carcasses were fabricated into boneless, totally trimmed retail products. Regression equations to predict weight and percentage of retail product were developed using either live animal or carcass traits as independent variables. Most of the variation in weight of retail product was accounted for by live weight (FWT) and carcass weight with R2 values of 0.66 and 0.69, respectively. Fat measurements accounted for the largest portion of the variation in percentage of retail product when used as single predictors (R2 = 0.54, 0.44, 0.23, and 0.54 for UFAT, URPFAT, UBDWALL, and carcass fat, respectively). Final models (P < 0.10) using live animal variables included FWT, UFAT, ULMA, and URPFAT for retail product weight (R2 = 0.84) and UFAT, URPFAT, ULMA, UBDWALL, and FWT for retail product percentage (R2 = 0.61). Comparatively, equations using YG variables resulted in R2 values of 0.86 and 0.65 for weight and percentage of retail product, respectively. Results indicate that live animal equations using ultrasound measurements are similar in accuracy to carcass measurements for predicting beef carcass composition, and alternative ultrasound measurements of rump fat and body wall thickness enhance the predictive capability of live animal-based equations for retail yield.

Accuracy of predicting weight and percentage of beef carcass retail product using ultrasound and live animal measures.

Five hundred thirty-four steers were evaluated over a 2-yr period to develop and validate prediction equations for estimating carcass composition from live animal ultrasound measurements and to compare these equations with those developed from carcass measurements. Within 5 d before slaughter, steers were ultrasonically measured for 12th-rib fat thickness (UFAT), longissimus area (ULMA), rump fat thickness (URPFAT), and body wall thickness (UBDWALL). Carcasses were fabricated to determine weight (KGRPRD) and percentage (PRPRD) of boneless, totally trimmed retail product. Data from steers born in Year 1 (n = 282) were used to develop prediction equations using stepwise regression. Final models using live animal variables included live weight (FWT), UFAT, ULMA, and URPFAT for KGRPRD (R2 = 0.83) and UFAT, URPFAT, ULMA, FWT, and UBDWALL for PRPRD (R2 = 0.67). Equations developed from USDA yield grade variables resulted in R2 values of 0.87 and 0.68 for KGRPRD and PRPRD, respectively. When these equations were applied to steers born in Year 2 (n = 252), correlations between values predicted from live animal models and actual carcass values were 0.92 for KGRPRD, and ranged from 0.73 to 0.76 for PRPRD. Similar correlations were found for equations developed from carcass measures (r = 0.94 for KGRPRD and 0.81 for PRPRD). Both live animal and carcass equations overestimated (P < 0.01) actual KGRPRD and PRPRD. Regression of actual values on predicted values revealed a similar fit for equations developed from live animal and carcass measures. Results indicate that composition prediction equations developed from live animal and ultrasound measurements can be useful to estimate carcass composition.

The relationship between ultrasound measurements and carcass fat thickness and longissimus muscle area in beef cattle.

Five hundred thirty-four steers were evaluated over a 2-yr period to determine the accuracy of ultrasonic estimates of carcass 12th-rib fat thickness (CFAT) and longissimus muscle area (CLMA). Within 5 d before slaughter, steers were ultrasonically measured for 12th-rib fat thickness (UFAT) and longissimus muscle area (ULMA) using an Aloka 500V real-time ultrasound machine equipped with a 17.2-cm, 3.5-MHz linear transducer. Overall, correlation coefficients between ultrasound and carcass fat and longissimus muscle area were 0.89 and 0.86, respectively. Correlations for UFAT with CFAT were similar between years (0.86 and 0.90), whereas the relationship between ULMA and CLMA was stronger in yr 1 (r = 0.91; n = 282) than in yr 2 (r = 0.79; n = 252). Differences between ultrasonic and carcass measurements were expressed on both an actual (FDIFF and RDIFF) and absolute (FDEV and RDEV) basis. Mean FDIFF and RDIFF indicated that ultrasound underestimated CFAT by 0.06 cm and overestimated CLMA by 0.71 cm2 across both years. Overall mean FDEV and RDEV, which are indications of the average error rate, were 0.16 cm and 3.39 cm2, respectively. Analysis of year effects revealed that FDIFF, FDEV, and RDEV were greater (P < 0.01) in magnitude in yr 1. Further analysis of FDEV indicated that leaner (CFAT < 0.51 cm) cattle were overestimated and that fatter (CFAT > 1.02 cm) cattle were underestimated with ultrasound. Similarly, steers with small CLMA (< 71.0 cm2) were overestimated, and steers with large CLMA (> 90.3 cm2) were underestimated. The thickness of CFAT had an effect (P < 0.05) on the error of UFAT and ULMA measurements, with leaner animals being more accurately evaluated for both traits. Standard errors of prediction (SEP) adjusted for bias of ultrasound measurements were 0.20 cm and 4.49 cm2 for UFAT and ULMA, respectively. Differences in SEP were observed for ULMA, but not UFAT, by year. These results indicate that ultrasound can be an accurate estimator of carcass traits in live cattle when measurements are taken by an experienced, well-trained technician, with only small differences in accuracy between years.

Estimation of genetic parameters for ultrasound-predicted percentage of intramuscular fat in Angus cattle using random regression models.

The present study included 3,358 observations of 675 bulls and heifers from the Iowa State University beef cattle breeding project. Data were collected over a 3-yr period between 1998 and 2000. Each year, cattle were scanned four to six times for ultrasound-predicted percentage of intramuscular fat (UPFAT) and other ultrasound traits, starting at a minimum age of 28 wk. The objective of the current study was to estimate variance components, heritability, and repeatability of UPFAT in young bulls and heifers. Data were subjected to random-regression animal models that included fixed effects of contemporary group, fixed Legendre polynomial of age at measurement, and random regression coefficients on Legendre polynomial of age at measurement for animals' direct genetic and direct permanent environmental effects. Phenotypic and genetic models involving different levels of polynomial fit for the animal component were considered. A model fitting a linear effect of Legendre polynomial of age at a measurement for animal direct genetic and direct permanent environmental effects and a homogeneous error variance described the present data adequately. Heritability of UPFAT ranged from 0.32 at 28 wk of age to a maximum of 0.53 at 63 wk. Repeatability of UPFAT increased from a minimum of 0.60 at ages of 28 to 39 wk to a maximum of 0.80 at ages 61 to 63 wk. Heritability and repeatability of yearling UPFAT were 0.50 and 0.71, respectively. With the exception of minor differences at earlier ages, fitting heterogeneous error variances did not have an effect on genetic parameter estimates for most ages of measurement. The present results showed an optimal heritability and repeatability of UPFAT measures around 52 wk and through at least 63 wk of age. This suggested that differences in UPFAT measures during this period also are good measures of differences in marbling genetic potential of Angus cattle.

The genome of the natural genetic engineer Agrobacterium tumefaciens C58.

The 5.67-megabase genome of the plant pathogen Agrobacterium tumefaciens C58 consists of a circular chromosome, a linear chromosome, and two plasmids. Extensive orthology and nucleotide colinearity between the genomes of A. tumefaciens and the plant symbiont Sinorhizobium meliloti suggest a recent evolutionary divergence. Their similarities include metabolic, transport, and regulatory systems that promote survival in the highly competitive rhizosphere; differences are apparent in their genome structure and virulence gene complement. Availability of the A. tumefaciens sequence will facilitate investigations into the molecular basis of pathogenesis and the evolutionary divergence of pathogenic and symbiotic lifestyles.

An alternative system for cerebrovascular reconstructions: non-penetrating arcuate-legged clips.

Non-penetrating, arcuate-legged titanium clips (VCS) have been utilized successfully over the past five years for a variety of cerebrovascular reconstructions. These applications, including both micro and macrovascular reconstructions, their clinical outcomes and technical considerations are described. Applications include patch angioplasty of cervical carotid endarterectomies, superficial temporal to middle cerebral artery 'bypass' procedures, Takayasu's arteritis and cavernous carotid reconstructions. The non-penetrating clip has proven to be a safe and reliable alternative to suture for these demanding reconstructions. Clips provide the advantages of improved anastomotic compliance, reduced operative time, and reduced incidence of post-operative anastomotic intimal hyperplasia and stenosis. Clip related pitfalls are discussed with recommendations regarding usage.

Predicting percentage of intramuscular fat using two types of real-time ultrasound equipment.

In the present study, 500 steers were used to develop models for predicting the percentage of intramuscular fat (PIMF) in live beef cattle. Before slaughter, steers were scanned across the 11th and 13th ribs using Aloka 500V (AL-500) and Classic Scanner 200 (CS-200) machines. Four to five images were collected per individual steer using each machine. After slaughter, a cross-sectional slice of the longissimus muscle from the 12th rib facing was used for chemical extraction to determine actual carcass percentage of intramuscular fat (CPIMF). Texture analysis software was used by two interpreters to select a region for determination of image parameters, which included Fourier, gradient, histogram, and co-occurrence parameters. Four prediction models were developed separately for each of AL-500 and CS-200 based on images captured by the respective machines. These included models developed without transformation of CPIMF (Model I), models based on logarithmic transformation of CPIMF (Model II), ridge regression procedure (Model III), and principal component regression procedure (Model IV). Model R2 and root mean square error of AL-500 Models I, II, III, and IV were 0.72, 0.84%; 0.72, 0.85%; 0.69, 0.91%; and 0.71, 0.86%; respectively. The corresponding R2 and root mean square error values of CS-200 Models I, II, III, and IV were 0.68, 0.87%; 0.70, 0.85%; 0.64, 0.94%; and 0.65, 0.91%; respectively. Initially, AL-500 and CS-200 prediction models were validated separately on an independent data set from 71 feedlot steers. The overall mean bias, standard error of prediction, and rank correlation coefficient across the four AL-500 models were 0.42%, 0.84%, and 0.88, respectively. For the four CS-200 models, the corresponding overall mean values were 0.67%, 0.81%, and 0.91, respectively. In a second validation test, only Model II of AL-500 and CS-200 was evaluated separately based on data from 24 feedlot steers. The overall mean bias, absolute difference, and standard error of prediction of AL-500 Model II were 0.71, 0.92, and 0.98%. For CS-200 Model II, the corresponding values were 0.59, 0.97, and 1.03%. Both AL-500 and CS-200 equipment can be used to accurately predict PIMF in live cattle. Further improvement in the accuracy of prediction equations could be achieved through increasing the development data set and the variation in PIMF of cattle used.

Sonography of palpable breast cancer.

PURPOSE: Because of the increasing use of sonography to rule out cancer in women with palpable breast abnormalities, this study was performed to determine the rate of sonographically occult malignancy in this clinical setting. METHODS: Women who were recommended for biopsy based on mammographic and/or clinical findings underwent breast sonography. This study retrospectively analyzed the subset of patients with palpable malignant lesions. Lesions were classified as visible or occult on mammography and sonography. Patients without a tissue diagnosis of tumor were excluded. RESULTS: Of 1,346 masses that underwent biopsy or aspiration, 616 lesions were palpable, and of these, 293 were malignant. Sonography detected all 293 palpable malignant lesions (95% confidence interval for sensitivity, 99-100%). Eighteen lesions were mammographically occult. The median lesion size as determined by sonography was 1.8 cm; for the lesions that were mammographically occult, the median size was 1.6 cm. The most common histopathologic diagnosis for both groups of lesions was infiltrating ductal carcinoma. CONCLUSIONS: All palpable malignant breast lesions were visible by sonography in patients in whom a biopsy was recommended. However, we caution that until the false-negative rate of sonography for equivocal palpable abnormalities is determined prospectively, sonography cannot be accurately applied to rule out malignancy in this setting.

Least-inclusive taxonomic unit: a new taxonomic concept for biology.

Phylogenetic taxonomy has been introduced as a replacement for the Linnaean system. It differs from traditional nomenclature in defining taxon names with reference to phylogenetic trees and in not employing ranks for supraspecific taxa. However, 'species' are currently kept distinct. Within a system of phylogenetic taxonomy we believe that taxon names should refer to monophyletic groups only and that species should not be recognized as taxa. To distinguish the smallest identified taxa, we here introduce the least-inclusive taxonomic unit (LITU), which are differentiated from more inclusive taxa by initial lower-case letters. LITUs imply nothing absolute about inclusiveness, only that subdivisions are not presently recognized.