C-STABILITY an innovative modeling framework to leverage the continuous representation of organic matter.

The understanding of soil organic matter (SOM) dynamics has considerably advanced in recent years. It was previously assumed that most SOM consisted of recalcitrant compounds, whereas the emerging view considers SOM as a range of polymers continuously processed into smaller molecules by decomposer enzymes. Mainstreaming this new paradigm in current models is challenging because of their ill-adapted framework. We propose the C-STABILITY model to resolve this issue. Its innovative framework combines compartmental and continuous modeling approaches to accurately reproduce SOM cycling processes. C-STABILITY emphasizes the influence of substrate accessibility on SOM turnover and makes enzymatic and microbial biotransformations of substrate explicit. Theoretical simulations provide new insights on how depolymerization and decomposers ecology impact organic matter chemistry and amount during decomposition and at steady state. The flexible mathematical structure of C-STABILITY offers a promising foundation for exploring new mechanistic hypotheses and supporting the design of future experiments.

Conventional analysis methods underestimate the plant-available pools of calcium, magnesium and potassium in forest soils.

The plant-available pools of calcium, magnesium and potassium are assumed to be stored in the soil as exchangeable cations adsorbed on the cation exchange complex. In numerous forest ecosystems, despite very low plant-available pools, elevated forest productivities are sustained. We hypothesize that trees access nutrient sources in the soil that are currently unaccounted by conventional soil analysis methods. We carried out an isotopic dilution assay to quantify the plant-available pools of calcium, magnesium and potassium and trace the soil phases that support these pools in 143 individual soil samples covering 3 climatic zones and 5 different soil types. For 81%, 87% and 90% of the soil samples (respectively for Ca, Mg and K), the plant-available pools measured by isotopic dilution were greater than the conventional exchangeable pool. This additional pool is most likely supported by secondary non-crystalline mineral phases in interaction with soil organic matter and represents in many cases (respectively 43%, 27% and 47% of the soil samples) a substantial amount of plant-available nutrient cations (50% greater than the conventional exchangeable pools) that is likely to play an essential role in the biogeochemical functioning of forest ecosystems, in particular when the resources of Ca, Mg and K are low.

Microbial Enzymatic Activities and Community-Level Physiological Profiles (CLPP) in Subsoil Layers Are Altered by Harvest Residue Management Practices in a Tropical Eucalyptus grandis Plantation.

Harvest residue management is a key issue for the sustainability of Eucalyptus plantations established on poor soils. Soil microbial communities contribute to soil fertility by the decomposition of the organic matter (OM), but little is known about the effect of whole-tree harvesting (WTH) in comparison to stem only harvesting (SOH) on soil microbial functional diversity in Eucalyptus plantations. We studied the effects of harvest residue management (branches, leaves, bark) of Eucalyptus grandis trees on soil enzymatic activities and community-level physiological profiles in a Brazilian plantation. We measured soil microbial enzymatic activities involved in OM decomposition and we compared the community level physiological profiles (CLPP) of the soil microbes in WTH and SOH plots. WTH decreased enzyme activities and catabolic potential of the soil microbial community. Furthermore, these negative effects on soil functional diversity were mainly observed below the 0-5 cm layer (5-10 and 10-20 cm), suggesting that WTH can be harmful to the soil health in these plantations.

First evidences that the ectomycorrhizal fungus Paxillus involutus mobilizes nitrogen and carbon from saprotrophic fungus necromass.

Fungal succession in rotting wood shows a surprising abundance of ectomycorrhizal (EM) fungi during the late decomposition stages. To better understand the links between EM fungi and saprotrophic fungi, we investigated the potential capacities of the EM fungus Paxillus involutus to mobilize nutrients from necromass of Postia placenta, a wood rot fungus, and to transfer these elements to its host tree. In this aim, we used pure cultures of P. involutus in the presence of labelled Postia necromass (15 N/13 C) as nutrient source, and a monoxenic mycorrhized pine experiment composed of labelled Postia necromass and P. involutus culture in interaction with pine seedlings. The isotopic labelling was measured in both experiments. In pure culture, P. involutus was able to mobilize N, but C as well, from the Postia necromass. In the symbiotic interaction experiment, we measured high 15 N enrichments in all plant and fungal compartments. Interestingly, 13 C remains mainly in the mycelium and mycorrhizas, demonstrating that the EM fungus transferred essentially N from the necromass to the tree. These observations reveal that fungal organic matter could represent a significant N source for EM fungi and trees, but also a C source for mycorrhizal fungi, including in symbiotic lifestyle.

Aboveground overyielding in a mixed temperate forest is not explained by belowground processes.

The relationship between forest productivity and tree species diversity has been described in detail, but the underlying processes have yet to be identified. One important issue is to understand which processes are at the origin of observed aboveground overyielding in some mixed forests. We used a beech-maple plantation exhibiting aboveground overyielding to test whether belowground processes could explain this pattern. Soil cores were collected to determine fine root (FR) biomass and vertical distribution. Correlograms were used to detect spatial arrangement. Near-infrared reflectance spectroscopy was used to identify the tree species proportion in the FR samples and spatial root segregation. An isotopic approach was used to identify water acquisition patterns. The structure and the composition of the ectomycorrhizal fungal community were determined by high-throughput sequencing of DNA in the soil samples. We found no spatial pattern for FR biomass or for its vertical distribution along the gradients. No vertical root segregation was found, as FR density for both species decreased with depth in a similar way. The two species displayed similar vertical water acquisition profiles as well, mainly absorbing water from shallow soil layers; hence, niche differentiation for water acquisition was not highlighted here. Significant alterations in the fungal community compositions were detected in function of the percentage of maple in the vicinity of beech. Our findings do not support the commonly suggested drivers of aboveground overyielding in species-diverse forests and suggest that competition reduction or between-species facilitation of belowground resource acquisition may not explain the observed aboveground overyielding.

Increased light-use efficiency sustains net primary productivity of shaded coffee plants in agroforestry system.

In agroforestry systems, shade trees strongly affect the physiology of the undergrown crop. However, a major paradigm is that the reduction in absorbed photosynthetically active radiation is, to a certain extent, compensated by an increase in light-use efficiency, thereby reducing the difference in net primary productivity between shaded and non-shaded plants. Due to the large spatial heterogeneity in agroforestry systems and the lack of appropriate tools, the combined effects of such variables have seldom been analysed, even though they may help understand physiological processes underlying yield dynamics. In this study, we monitored net primary productivity, during two years, on scales ranging from individual coffee plants to the entire plot. Absorbed radiation was mapped with a 3D model (MAESPA). Light-use efficiency and net assimilation rate were derived for each coffee plant individually. We found that although irradiance was reduced by 60% below crowns of shade trees, coffee light-use efficiency increased by 50%, leaving net primary productivity fairly stable across all shade levels. Variability of aboveground net primary productivity of coffee plants was caused primarily by the age of the plants and by intraspecific competition among them (drivers usually overlooked in the agroforestry literature) rather than by the presence of shade trees.

Modelling and predicting the spatial distribution of tree root density in heterogeneous forest ecosystems.

BACKGROUND AND AIMS: In mountain ecosystems, predicting root density in three dimensions (3-D) is highly challenging due to the spatial heterogeneity of forest communities. This study presents a simple and semi-mechanistic model, named ChaMRoots, that predicts root interception density (RID, number of roots m(-2)). ChaMRoots hypothesizes that RID at a given point is affected by the presence of roots from surrounding trees forming a polygon shape. METHODS: The model comprises three sub-models for predicting: (1) the spatial heterogeneity - RID of the finest roots in the top soil layer as a function of tree basal area at breast height, and the distance between the tree and a given point; (2) the diameter spectrum - the distribution of RID as a function of root diameter up to 50 mm thick; and (3) the vertical profile - the distribution of RID as a function of soil depth. The RID data used for fitting in the model were measured in two uneven-aged mountain forest ecosystems in the French Alps. These sites differ in tree density and species composition. KEY RESULTS: In general, the validation of each sub-model indicated that all sub-models of ChaMRoots had good fits. The model achieved a highly satisfactory compromise between the number of aerial input parameters and the fit to the observed data. CONCLUSIONS: The semi-mechanistic ChaMRoots model focuses on the spatial distribution of root density at the tree cluster scale, in contrast to the majority of published root models, which function at the level of the individual. Based on easy-to-measure characteristics, simple forest inventory protocols and three sub-models, it achieves a good compromise between the complexity of the case study area and that of the global model structure. ChaMRoots can be easily coupled with spatially explicit individual-based forest dynamics models and thus provides a highly transferable approach for modelling 3-D root spatial distribution in complex forest ecosystems.

Is the simple auger coring method reliable for below-ground standing biomass estimation in Eucalyptus forest plantations?

BACKGROUND AND AIMS: Despite their importance for plant production, estimations of below-ground biomass and its distribution in the soil are still difficult and time consuming, and no single reliable methodology is available for different root types. To identify the best method for root biomass estimations, four different methods, with labour requirements, were tested at the same location. METHODS: The four methods, applied in a 6-year-old Eucalyptus plantation in Congo, were based on different soil sampling volumes: auger (8 cm in diameter), monolith (25 × 25 cm quadrate), half Voronoi trench (1·5 m(3)) and a full Voronoi trench (3 m(3)), chosen as the reference method. KEY RESULTS: With the reference method (0-1m deep), fine-root biomass (FRB, diameter <2 mm) was estimated at 1·8 t ha(-1), medium-root biomass (MRB diameter 2-10 mm) at 2·0 t ha(-1), coarse-root biomass (CRB, diameter >10 mm) at 5·6 t ha(-1) and stump biomass at 6·8 t ha(-1). Total below-ground biomass was estimated at 16·2 t ha(-1) (root : shoot ratio equal to 0·23) for this 800 tree ha(-1) eucalypt plantation density. The density of FRB was very high (0·56 t ha(-1)) in the top soil horizon (0-3 cm layer) and decreased greatly (0·3 t ha(-1)) with depth (50-100 cm). Without labour requirement considerations, no significant differences were found between the four methods for FRB and MRB; however, CRB was better estimated by the half and full Voronoi trenches. When labour requirements were considered, the most effective method was auger coring for FRB, whereas the half and full Voronoi trenches were the most appropriate methods for MRB and CRB, respectively. CONCLUSIONS: As CRB combined with stumps amounted to 78 % of total below-ground biomass, a full Voronoi trench is strongly recommended when estimating total standing root biomass. Conversely, for FRB estimation, auger coring is recommended with a design pattern accounting for the spatial variability of fine-root distribution.

Influence of nitrogen and potassium fertilization on leaf lifespan and allocation of above-ground growth in Eucalyptus plantations.

Eucalyptus grandis (W. Hill ex Maiden) leaf traits and tree growth were studied over 3 years after the establishment of two adjacent complete randomized block designs in southern Brazil. In a nitrogen (N) input experiment, a treatment with the application of 120 kg N ha(-1) was compared to a control treatment without N addition, and in a potassium (K) input experiment a control treatment without K addition was compared to a treatment with the application of 116 kg K ha(-1). Young leaves were tagged 9 months after planting to estimate the effect of N and K fertilizations on leaf lifespan. Leaf mass, specific leaf area and nutrient concentrations were measured on a composite sample per plot every 28 days until the last tagged leaf fell. Successive inventories, destructive sampling of trees and leaf litter fall collection made it possible to assess the effect of N and K fertilization on the dynamics of biomass accumulation in above-ground tree components. Whilst the effects of N fertilization on tree growth only occurred in the first 24 months after planting, K fertilization increased the above-ground net primary production from 4478 to 8737 g m(-2) over the first 36 months after planting. The average lifespan of tagged leaves was not modified by N addition but it increased from 111 to 149 days with K fertilization. The peak of leaf production occurred in the second year after planting (about 800 g m(-2) year(-1)) and was not significantly modified (P < 0.05) by N and K fertilizations. By contrast, K addition significantly increased the maximum leaf standing biomass from 292 to 528 g m(-2), mainly as a consequence of the increase in leaf lifespan. Potassium fertilization increased the stand biomass mainly through the enhancement in leaf area index (LAI) since growth efficiency (defined as the ratio between woody biomass production and LAI) was not significantly modified. A better understanding of the physiological processes governing the leaf lifespan is necessary to improve process-based models currently used in Eucalyptus plantations.

Two independent estimations of stand-level root respiration on clonal Eucalyptus stands in Congo: up scaling of direct measurements on roots versus the trenched-plot technique.

Root respiration at the level of a forest stand, an important component of ecosystem carbon balance, has been estimated in the past using various methods, most of them being indirect and relying on soil respiration measurements. On a 3-yr-old Eucalyptus stand in Congo-Brazzaville, a method involving the upscaling of direct measurements made on roots in situ, was compared with an independent approach using soil respiration measurements conducted on control and trenched plots (i.e. without living roots). The first estimation was based on the knowledge of root-diameter distribution and on a relationship between root diameter and specific respiration rates. The direct technique involving the upscaling of direct measurements on roots resulted in an estimation of 1.53 micromol m(-2) s(-1), c. 50% higher than the mean estimation obtained with the indirect technique (1.05 micromol m(-2) s(-1)). Monte-Carlo simulations showed that the results carried high uncertainty, but this uncertainty was no higher for the direct method than for the trenched-plot method. The reduction of the uncertainties on upscaled results requires more extensive knowledge of temperature sensitivity and more confidence and precision on the respiration rates and biomasses of fine roots.

A generic model to describe the dynamics of nutrient concentrations within stemwood across an age series of a eucalyptus hybrid.

Nutrient concentrations (N, P, K) were determined within stemwood in an age series of eucalyptus stands. Four trees per stand were selected according to their size to represent the whole range of basal areas in 1-, 2-, 3-, 4-, 5-, 6- and 7-year-old stands. Cross-sections were sampled every 4 m from the ground to the top of the tree, and chemical analyses were performed for each annual ring in the cross-sections. We constructed a new and generic model to describe the dynamics of nutrient concentrations within the stemwood. Three main parameters were used: (1) the initial concentration of the ring, Ic; (2) the final concentration of the ring at harvest, Fc; and (3) the rate of change in concentration, k. The model is very flexible and was adapted to describe N, P and K concentrations within the stems, and their dynamics over time. An analysis of the parameters showed that k was constant for a given nutrient. Ic varied with height within the tree for P, whereas for N and K it was a function of: (1) the age of the tree when the ring was initiated: and (2) height within the tree. Fc was constant for N, and dependent on the age of the tree when the ring was initiated for K and P. The final models showed a low Root Mean Square Error for a limited number of parameters (less than seven). When validated on an independent sample, the models were shown to have high predictive quality.