Real-time PCR validation to estimate the number of rickettsias in the biological material under study.

Using the example of the clinical strain of R. sibirica «Bayevo 105/87¼, the possibility of quantitative determination of rickettsias in clinical samples from patients with Siberian tick-borne typhus by real-time polymerase chain reaction (PCR-RT) was evaluated. Cultivation was carried out in the yolk sacs of developing chicken embryos, from which a piece of the yolk sac or chorion was taken. A total of 125 samples were examined. A set of reagents "RealBest DNA Rickettsia species (kit1)" was used for PCR-RT. The obtained values of the threshold amplification cycle (Ct) were compared with the results of microscopy of smear preparations stained by the Zdrodovsky method, the values of which were divided into ranks: the I rank - single rickettsias in individual fields of vision, the II rank - single rickettsias in each field of vision, the III rank - from 10 to 25 rickettsias in each field of vision, the IV rank - from 25 to 50 rickettsias in each field of view. The median Ct value for rank I was 17.6 (16.37; 18.58), for the II - 16.0 (15.0; 16.41), for the III - 15.0 (14.0; 15.1) and for the IV - 15.0 (13.7; 14.64). A significant average correlation was established between the number of rickettsias in the preparation under microscopy and the value of the threshold cycle in PCR RT (r=-0, 4849542; p=9.968e-09). When determining the correlation between the pathomorphological characteristic and the value of the threshold cycle, its absence was established. The detection of rickettsias in the blood vessels of the chorion of developing chicken embryos was of interest. In 10 samples, the yolk sac and chorion were taken for the study, and in parallel they were examined by PCR-RT. The use of modern, more sensitive molecular biological methods allows for quantitative analysis of DNA in the chorion, while preserving the volumes of the most valuable material - the yolk sac.

Total nucleon-nucleus reaction cross sections calculated in the frame of the cascade model.

Total nucleon reaction cross sections with nuclei are necessary as input data for various applications, such as transport calculations or prediction of different radiation effects. Nevertheless, experimental data until now are rather scarce and contradictory whereas reliable theoretical models are absent. The optical model of nuclear reactions, most often used for the calculation of reaction cross sections, cannot be applied for extrapolation into the regions where no experimental data exist, due to the large number of free parameters in the phenomenological optical potential. This paper presents the calculations of nucleon reaction cross sections in the frame of the new generalised cascade model. The model includes the self-consistent description of the nucleon density and potential in nuclei, accurate consideration of the refraction process by the mean field, non-locality of the nuclear interaction and reduction of the nucleon-nucleon interaction cross sections in dense nuclear matter. The results of the calculations show overall good agreement with available experimental data in wide ranges of nuclei and nucleon energies from 10 MeV to 10 GeV without free model parameters. The present model may be a good base for the creation of global systematics of total nucleon reaction cross sections.

Single event upsets in semiconductor devices induced by highly ionising particles.

A new model of single event upsets (SEUs), created in memory cells by heavy ions and high energy hadrons, has been developed. The model takes into account the spatial distribution of charge collection efficiency over the cell area not considered in previous approaches. Three-dimensional calculations made by the HADRON code have shown good agreement with experimental data for the energy dependence of proton SEU cross sections, sensitive depths and other SEU observables. The model is promising for prediction of SEU rates for memory chips exposed in space and in high-energy experiments as well as for the development of a high-energy neutron dosemeter based on the SEU effect.

High-energy neutron dosimetry with superheated drop detectors.

A systematic analysis of the response of dichlorodifluoromethane superheated drop detectors was performed in the 46-133 MeV energy range. Experiments with quasi-monoenergetic neutron beams were performed at the Université Catholique de Leuvain-la-Neuve, Belgium and the Svedberg Laboratory, Sweden, while tests in a broad field were performed at CERN. To determine the response of the detectors to the high-energy beams, the spectra of incident neutrons were folded over functions modelled after the cross sections for the production of heavy ions from the detector elements. The cross sections for fluorine and chlorine were produced in this work by means of the Monte Carlo high-energy transport code HADRON based on the cascade exciton model of nuclear interactions. The new response data permit the interpretation of measurements at high-energy accelerators and on high-altitude commercial flights, where a 30-50% under-response had been consistently recorded with respect to neutron dose equivalent. The introduction of a 1 cm lead shell around the detectors effectively compensates most of the response defect.