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1.
ISME J ; 18(1)2024 Jan 08.
Artigo em Inglês | MEDLINE | ID: mdl-38365240

RESUMO

Delineating cohesive ecological units and determining the genetic basis for their environmental adaptation are among the most important objectives in microbiology. In the last decade, many studies have been devoted to characterizing the genetic diversity in microbial populations to address these issues. However, the impact of extreme environmental conditions, such as temperature and salinity, on microbial ecology and evolution remains unclear so far. In order to better understand the mechanisms of adaptation, we studied the (pan)genome of Exiguobacterium, a poly-extremophile bacterium able to grow in a wide range of environments, from permafrost to hot springs. To have the genome for all known Exiguobacterium type strains, we first sequenced those that were not yet available. Using a reverse-ecology approach, we showed how the integration of phylogenomic information, genomic features, gene and pathway enrichment data, regulatory element analyses, protein amino acid composition, and protein structure analyses of the entire Exiguobacterium pangenome allows to sharply delineate ecological units consisting of mesophilic, psychrophilic, halophilic-mesophilic, and halophilic-thermophilic ecotypes. This in-depth study clarified the genetic basis of the defined ecotypes and identified some key mechanisms driving the environmental adaptation to extreme environments. Our study points the way to organizing the vast microbial diversity into meaningful ecologically units, which, in turn, provides insight into how microbial communities adapt and respond to different environmental conditions in a changing world.


Assuntos
Exiguobacterium , Extremófilos , Genômica , Filogenia , Proteínas
2.
FEMS Microbes ; 5: xtad023, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38213395

RESUMO

Comparisons of functional and taxonomic profiles from bacterial communities in different habitats have suggested the existence of functional guilds composed of taxonomically or phylogenetically distinct members. Such guild membership is, however, rarely defined and the factors that drive functional diversity in bacteria remain poorly understood. We used seaweed-associated bacteria as a model to shed light on these important aspects of community ecology. Using a large dataset of over 1300 metagenome-assembled genomes from 13 seaweed species we found substantial overlap in the functionality of bacteria coming from distinct taxa, thus supporting the existence of functional guilds. This functional equivalence between different taxa was particularly pronounced when only functions involved in carbohydrate degradation were considered. We further found that bacterial taxonomy is the dominant driver of functional differences between bacteria and that seaweed species or seaweed type (i.e. brown, red and green) had relatively stronger impacts on genome functionality for carbohydrate-degradation functions when compared to all other cellular functions. This study provides new insight into the factors underpinning the functional diversity of bacteria and contributes to our understanding how community function is generated from individual members.

3.
Environ Microbiol ; 26(1): e16553, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-38062568

RESUMO

Interspecific interactions in biofilms have been shown to cause the emergence of community-level properties. To understand the impact of interspecific competition on evolution, we deep-sequenced the dispersal population of mono- and co-culture biofilms of two antagonistic marine bacteria (Phaeobacter inhibens 2.10 and Pseudoalteromononas tunicata D2). Enhanced phenotypic and genomic diversification was observed in the P. tunicata D2 populations under both mono- and co-culture biofilms in comparison to P. inhibens 2.10. The genetic variation was exclusively due to single nucleotide variants and small deletions, and showed high variability between replicates, indicating their random emergence. Interspecific competition exerted an apparent strong positive selection on a subset of P. inhibens 2.10 genes (e.g., luxR, cobC, argH, and sinR) that could facilitate competition, while the P. tunicata D2 population was genetically constrained under competition conditions. In the absence of interspecific competition, the P. tunicata D2 replicate populations displayed high levels of mutations affecting the same genes involved in cell motility and biofilm formation. Our results show that interspecific biofilm competition has a complex impact on genomic diversification, which likely depends on the nature of the competing strains and their ability to generate genetic variants due to their genomic constraints.


Assuntos
Pseudoalteromonas , Rhodobacteraceae , Biofilmes , Rhodobacteraceae/genética , Pseudoalteromonas/genética , Genômica , Ecologia , Evolução Molecular
4.
J Environ Manage ; 345: 118737, 2023 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-37657296

RESUMO

Assessing the presence of waterborne pathogens and antibiotic resistance genes (ARGs) is crucial for managing the environmental quality of drinking water sources. However, detecting low abundance pathogens in such settings is challenging. In this study, a workflow was developed to enrich for broad spectrum pathogens from drinking water samples. A mock community was used to evaluate the effectiveness of various enrichment broths in detecting low-abundance pathogens. Monthly metagenomic surveillance was conducted in a drinking water source from May to September 2021, and water samples were subjected to five enrichment procedures for 6 h to recover the majority of waterborne bacterial pathogens. Oxford Nanopore Technology (ONT) was used for metagenomic sequencing of enriched samples to obtain high-quality pathogen genomes. The results showed that selective enrichment significantly increased the proportions of targeted bacterial pathogens. Compared to direct metagenomic sequencing of untreated water samples, targeted enrichment followed by ONT sequencing significantly improved the detection of waterborne pathogens and the quality of metagenome-assembled genomes (MAGs). Eighty-six high-quality MAGs, including 70 pathogen MAGs, were obtained from ONT sequencing, while only 12 MAGs representing 10 species were obtained from direct metagenomic sequencing of untreated water samples. In addition, ONT sequencing improved the recovery of mobile genetic elements and the accuracy of phylogenetic analysis. This study highlights the urgent need for efficient methodologies to detect and manage microbial risks in drinking water sources. The developed workflow provides a cost-effective approach for environmental management of drinking water sources with microbial risks. The study also uncovered pathogens that were not detected by traditional methods, thereby advancing microbial risk management of drinking water sources.


Assuntos
Água Potável , Metagenoma , Filogenia , Antibacterianos , Gestão de Riscos
5.
BMC Genomics ; 24(1): 508, 2023 Aug 31.
Artigo em Inglês | MEDLINE | ID: mdl-37653415

RESUMO

BACKGROUND: Cold-adapted archaea have diverse ecological roles in a wide range of low-temperature environments. Improving our knowledge of the genomic features that enable psychrophiles to grow in cold environments helps us to understand their adaptive responses. However, samples from typical cold regions such as the remote Arctic and Antarctic are rare, and the limited number of high-quality genomes available leaves us with little data on genomic traits that are statistically associated with cold environmental conditions. RESULTS: In this study, we examined the haloarchaeal genus Halorubrum and defined a new clade that represents six isolates from polar and deep earth environments ('PD group' hereafter). The genomic G + C content and amino acid composition of this group distinguishes it from other Halorubrum and the trends are consistent with the established genomic optimization of psychrophiles. The cold adaptation of the PD group was further supported by observations of increased flexibility of proteins encoded across the genome and the findings of a growth test. CONCLUSIONS: The PD group Halorubrum exhibited denser genome packing, which confers higher metabolic potential with constant genome size, relative to the reference group, resulting in significant differences in carbon, nitrogen and sulfur metabolic patterns. The most marked feature was the enrichment of genes involved in sulfur cycling, especially the production of sulfite from organic sulfur-containing compounds. Our study provides an updated view of the genomic traits and metabolic potential of Halorubrum and expands the range of sources of cold-adapted haloarchaea.


Assuntos
Halorubrum , Temperatura , Genômica , Tamanho do Genoma , Aminoácidos
6.
Syst Appl Microbiol ; 46(4): 126426, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-37141831

RESUMO

Sponges are known to harbour an exceptional diversity of uncultured microorganisms, including members of the phylum Actinobacteriota. While members of the actinobacteriotal class Actinomycetia have been studied intensively due to their potential for secondary metabolite production, the sister class of Acidimicrobiia is often more abundant in sponges. However, the taxonomy, functions, and ecological roles of sponge-associated Acidimicrobiia are largely unknown. Here, we reconstructed and characterized 22 metagenome-assembled genomes (MAGs) of Acidimicrobiia from three sponge species. These MAGs represented six novel species, belonging to five genera, four families, and two orders, which are all uncharacterized (except the order Acidimicrobiales) and for which we propose nomenclature. These six uncultured species have either only been found in sponges and/or corals and have varying degrees of specificity to their host species. Functional gene profiling indicated that these six species shared a similar potential to non-symbiotic Acidimicrobiia with respect to amino acid biosynthesis and utilization of sulfur compounds. However, sponge-associated Acidimicrobiia differed from their non-symbiotic counterparts by relying predominantly on organic rather than inorganic sources of energy, and their predicted capacity to synthesise bioactive compounds or their precursors implicated in host defence. Additionally, the species possess the genetic capacity to degrade aromatic compounds that are frequently found in sponges. The novel Acidimicrobiia may also potentially mediate host development by modulating Hedgehog signalling and by the production of serotonin, which can affect host body contractions and digestion. These results highlight unique genomic and metabolic features of six new acidimicrobiial species that potentially support a sponge-associated lifestyle.


Assuntos
Proteínas Hedgehog , Simbiose , Filogenia , Proteínas Hedgehog/genética , Proteínas Hedgehog/metabolismo , RNA Ribossômico 16S/genética , Bactérias
7.
RSC Adv ; 13(17): 11697-11705, 2023 Apr 11.
Artigo em Inglês | MEDLINE | ID: mdl-37063728

RESUMO

The corrosion of materials severely limits the application scenarios of triboelectric nanogenerators (TENGs), especially in laboratories, chemical plants and other fields where leakage of chemically corrosive solutions is common. Here, we demonstrate a chemical-resistant triboelectric nanogenerator (CR-TENG) based on polysulfonamide (PSA) and polytetrafluoroethylene (PTFE) non-woven fabrics. The CR-TENG can stably harvest biological motion energy and perform intelligent safety protection monitoring in a strong corrosive environment. After treatment with strong acid and alkali solution for 7 days, the fabric morphology, diameter, tensile properties and output of CR-TENG are not affected, showing high reliability. CR-TENG integrated into protective equipment can detect the working status of protective equipment in real time, monitor whether it is damaged, and provide protection for wearers working in high-risk situations. In addition, the nonwoven-based CR-TENG has better wearing comfort and is promising for self-powered sensing in harsh environments.

8.
Syst Appl Microbiol ; 46(2): 126401, 2023 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-36774720

RESUMO

Sponges harbour exceptionally diverse microbial communities, whose members are largely uncultured. The class Gammaproteobacteria often dominates the microbial communities of various sponge species, but most of its diversity remains functional and taxonomically uncharacterised. Here we reconstructed and characterised 32 metagenome-assembled genomes (MAGs) derived from three sponge species. These MAGs represent ten novel species and belong to seven orders, of which one is new. We propose nomenclature for all these taxa. These new species comprise sponge-specific bacteria with varying levels of host specificity. Functional gene profiling highlights significant differences in metabolic capabilities across the ten species, though each also often exhibited a large degree of metabolic diversity involving various nitrogen- and sulfur-based compounds. The genomic features of the ten species suggest they have evolved to form symbiotic interaction with their hosts or are well-adapted to survive within the sponge environment. These Gammaproteobacteria are proposed to scavenge substrates from the host environment, including metabolites or cellular components of the sponge. Their diverse metabolic capabilities may allow for efficient cycling of organic matter in the sponge environment, potentially to the benefit of the host and other symbionts.


Assuntos
Bactérias , Microbiota , Filogenia , RNA Ribossômico 16S/genética , Metagenoma , Compostos de Enxofre/metabolismo
9.
Water Res ; 226: 119242, 2022 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-36257156

RESUMO

Under the limitation of the carrier yield and mobility of semiconductor photocatalysts and the reaction domain, it seems that the photocatalytic efficiency cannot be greatly improved. Here, an efficient contact-electro-catalysis (CEC) system based on droplet triboelectric nanogenerator (TENG) is developed. Instead of using traditional semiconductor catalysts, the electric charge transferred during the electrification process of the contact between water droplets and polytetrafluoroethylene (PTFE) is used to participate in catalysis, and the output electrical signal can also monitor the degree of catalysis. The important role of light in the circulation of this CEC system is studied and discussed for the first time. It is proved that the contact electrification at the liquid-solid interface is accompanied by the generation of a large number of strong oxidizing radicals. The efficient transport of charge carriers driven by mechanical force and the active oxygen species distributed in the whole domain greatly improve the degradation rate of dyes. The experimental data show that the degradation efficiency of crystal violet (CV) reaches 90% within 38 s, and the rate constant k is as high as 3.7 min-1. This is a breakthrough in the field of catalysis.

10.
Bioinformatics ; 38(15): 3684-3688, 2022 08 02.
Artigo em Inglês | MEDLINE | ID: mdl-35713513

RESUMO

MOTIVATION: Metagenome-assembled genomes (MAGs) have substantially extended our understanding of microbial functionality. However, 16S rRNA genes, which are commonly used in phylogenetic analysis and environmental surveys, are often missing from MAGs. Here, we developed MarkerMAG, a pipeline that links 16S rRNA genes to MAGs using paired-end sequencing reads. RESULTS: Assessment of MarkerMAG on three benchmarking metagenomic datasets with various degrees of complexity shows substantial increases in the number of MAGs with 16S rRNA genes and a 100% assignment accuracy. MarkerMAG also estimates the copy number of 16S rRNA genes in MAGs with high accuracy. Assessments on three real metagenomic datasets demonstrate 1.1- to 14.2-fold increases in the number of MAGs with 16S rRNA genes. We also show that MarkerMAG-improved MAGs increase the accuracy of functional prediction from 16S rRNA gene amplicon data. MarkerMAG is helpful in connecting information in MAG databases with those in 16S rRNA databases and surveys and hence contributes to our increasing understanding of microbial diversity, function and phylogeny. AVAILABILITY AND IMPLEMENTATION: MarkerMAG is implemented in Python3 and freely available at https://github.com/songweizhi/MarkerMAG. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.


Assuntos
Metagenoma , Metagenômica , RNA Ribossômico 16S/genética , Filogenia , Bases de Dados Factuais
11.
Microbiome ; 10(1): 75, 2022 05 10.
Artigo em Inglês | MEDLINE | ID: mdl-35538590

RESUMO

BACKGROUND: The deep sea harbors the majority of the microbial biomass in the ocean and is a key site for organic matter (OM) remineralization and storage in the biosphere. Microbial metabolism in the deep ocean is greatly controlled by the generally depleted but periodically fluctuating supply of OM. Currently, little is known about metabolic potentials of dominant deep-sea microbes to cope with the variable OM inputs, especially for those living in the hadal trenches-the deepest part of the ocean. RESULTS: In this study, we report the first extensive examination of the metabolic potentials of hadal sediment Chloroflexi, a dominant phylum in hadal trenches and the global deep ocean. In total, 62 metagenome-assembled-genomes (MAGs) were reconstructed from nine metagenomic datasets derived from sediments of the Mariana Trench. These MAGs represent six novel species, four novel genera, one novel family, and one novel order within the classes Anaerolineae and Dehalococcoidia. Fragment recruitment showed that these MAGs are globally distributed in deep-sea waters and surface sediments, and transcriptomic analysis indicated their in situ activities. Metabolic reconstruction showed that hadal Chloroflexi mainly had a heterotrophic lifestyle, with the potential to degrade a wide range of organic carbon, sulfur, and halogenated compounds. Our results revealed for the first time that hadal Chloroflexi harbor pathways for the complete hydrolytic or oxidative degradation of various recalcitrant OM, including aromatic compounds (e.g., benzoate), polyaromatic hydrocarbons (e.g., fluorene), polychlorobiphenyl (e.g., 4-chlorobiphenyl), and organochlorine compounds (e.g., chloroalkanes, chlorocyclohexane). Moreover, these organisms showed the potential to synthesize energy storage compounds (e.g., trehalose) and had regulatory modules to respond to changes in nutrient conditions. These metabolic traits suggest that Chloroflexi may follow a "feast-or-famine" metabolic strategy, i.e., preferentially consume labile OM and store the energy intracellularly under OM-rich conditions, and utilize the stored energy or degrade recalcitrant OM for survival under OM-limited condition. CONCLUSION: This study expands the current knowledge on metabolic strategies in deep-ocean Chlorolfexi and highlights their significance in deep-sea carbon, sulfur, and halogen cycles. The metabolic plasticity likely provides Chloroflexi with advantages for survival under variable and heterogenic OM inputs in the deep ocean. Video Abstract.


Assuntos
Chloroflexi , Carbono/metabolismo , Chloroflexi/genética , Ecossistema , Oceanos e Mares , Enxofre/metabolismo
12.
Microbiome ; 10(1): 22, 2022 02 01.
Artigo em Inglês | MEDLINE | ID: mdl-35105377

RESUMO

BACKGROUND: Sponges are ancient sessile metazoans, which form with their associated microbial symbionts a complex functional unit called a holobiont. Sponges are a rich source of chemical diversity; however, there is limited knowledge of which holobiont members produce certain metabolites and how they may contribute to chemical interactions. To address this issue, we applied non-targeted liquid chromatography tandem mass spectrometry (LC-MS/MS) and gas chromatography mass spectrometry (GC-MS) to either whole sponge tissue or fractionated microbial cells from six different, co-occurring sponge species. RESULTS: Several metabolites were commonly found or enriched in whole sponge tissue, supporting the notion that sponge cells produce them. These include 2-methylbutyryl-carnitine, hexanoyl-carnitine and various carbohydrates, which may be potential food sources for microorganisms, as well as the antagonistic compounds hymenialdisine and eicosatrienoic acid methyl ester. Metabolites that were mostly observed or enriched in microbial cells include the antioxidant didodecyl 3,3'-thiodipropionate, the antagonistic compounds docosatetraenoic acid, and immune-suppressor phenylethylamide. This suggests that these compounds are mainly produced by the microbial members in the sponge holobiont, and are potentially either involved in inter-microbial competitions or in defenses against intruding organisms. CONCLUSIONS: This study shows how different chemical functionality is compartmentalized between sponge hosts and their microbial symbionts and provides new insights into how chemical interactions underpin the function of sponge holobionts. Video abstract.


Assuntos
Metabolômica , Espectrometria de Massas em Tandem , Cromatografia Líquida
13.
Materials (Basel) ; 15(3)2022 Jan 25.
Artigo em Inglês | MEDLINE | ID: mdl-35160847

RESUMO

In this paper, the ballistic damage mechanism and residual bearing capacity of ceramic/backing plate armor were investigated. First, a series of lightweight armors were prepared, consisting of ceramic and ultra-high molecular weight polyethylene fiber-reinforced resin matrix composite (UHMWPE) plates, and were wrapped in a high-strength fabric. Then, the ceramic/UHMWPE armors were hit by one or two bullets, and finally subjected to compression testing. The results showed that the main failure mode of integral ceramic/UHMWPE armors was ceramic brittle fracture. Many zigzag patterns on the compression curve indicated that the specimens had undergone the stages of crack propagation, ceramic fragment reorganization, plastic deformation of UHMWPE backing plate, interlaminar tearing, and overall fracture. The failure of spliced ceramic/UHMWPE armors was mainly due to the dislocation between ceramic sheets; the smooth compression curves indicated that there was no recombination of ceramic fragments and obvious interlayer debonding during the compression. Under the maximum load, each ceramic/UHMWPE armor with ballistic damage did not suddenly break and fail. The structure and thickness of ceramic plates all had an impact on residual strength: under the same structure, the greater the thickness, the greater the residual strength, but the relationship between them was not linear; under the same thickness, the residual strength of the spliced ceramic/UHMWPE armor was higher. The residual strength was also related to the number of shots: after two bullets hit, its value was only one-third of that after one bullet hit.

14.
PNAS Nexus ; 1(5): pgac226, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-36712370

RESUMO

Carbon fixation is a critical process for our planet; however, its distribution across the bacterial and archaeal domains of life has not been comprehensively studied. Here, we performed an analysis of 52,515 metagenome-assembled genomes and discover carbon fixation pathways in 1,007 bacteria and archaea. We reveal the genomic potential for carbon fixation through the reverse tricarboxylic acid cycle in previously unrecognized archaeal and bacterial phyla (i.e. Thermoplasmatota and Elusimicrobiota) and show that the 3-hydroxypropionate bi-cycle is not, as previously thought, restricted to the phylum Chloroflexota. The data also substantially expand the phylogenetic breadth for autotrophy through the dicarboxylate/4-hydroxybutyrate cycle and the Calvin-Benson-Bassham cycle. Finally, the genomic potential for carbon fixation through the 3-hydroxypropionate/4-hydroxybutyrate cycle, previously exclusively found in Archaea, was also detected in the Bacteria. Carbon fixation thus appears to be much more widespread than previously known, and this study lays the foundation to better understand the role of archaea and bacteria in global primary production and how they contribute to microbial carbon sinks.

15.
Nanotechnology ; 33(2)2021 Oct 22.
Artigo em Inglês | MEDLINE | ID: mdl-34614481

RESUMO

Biofuel cell (BFC) is a kind of bio-cell based on biological enzymes. The enzyme as a catalyst can interconvert renewable and sustainable energy into each other more rapidly, such as the biochemical energy in glucose and ethanol into electrical energy. In this work, artificial blood vessel and fuel cell are based on polyaniline/thermoplastic polyurethane (PANI/TPU) fiber membrane with an average fiber diameter of 1300 nm, a film thickness of 167µm, and a permeability of 18.4 mm s-1. The PANI/TPU fiber membrane was prepared by electrospinning and followedin situpolymerization. The membrane has good flexibility and mechanical properties, and can be stretched up to 200%. The advantages of good hydrophilicity, biocompatibility and high porosity make it possible to efficiently load glucose oxidase and laccase. The prepared BFC can stably output a voltage of 50 mV in simulated blood, and the output electrical signal changes significantly with the change of glucose concentration, which may be used in implantable devices or blood glucose monitoring.

16.
Nanoscale ; 13(41): 17417-17427, 2021 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-34647562

RESUMO

The rapid development of flexible and wearable electronics has proposed a trend towards miniaturization, mobility, versatility and artificial intelligence. Triboelectric nanogenerators (TENGs) can make use of micro/nano multi-functional materials to harvest and store energy from the surrounding environment efficiently, which can drive smart portable electronics operating continuously and steadily. The increase in the output power density of the triboelectric nanogenerator requires new designs. In this work, a new grating TENG was proposed, and the two friction layers were fabricated by near-field electrospinning and conventional electrospinning with two parallel electrodes as a collector, respectively. The basic model of the simulation was simplified according to the highly ordered structure and the repeatability of the TENG grating structure. The effect of the effective contact area on the output of the TENG was further proved by fitting the calculation regularity of the two models with the experimental results. At the same time, the effect of the redundant electrode on the output of the TENG was verified by experiments. We found that this nanogenerator can achieve a very high output of 1800 W m-2 due to a more refined grating structure combined with modification of the contact area. The TENG can also be used as a selfpowered sensor to detect mechanical signals, which requires no additional power source to drive it. Meanwhile, the anisotropic nature of the TENG can also be utilized to sense angles, lock devices or encrypt information. This output control technology provides a more effective idea for future output power improvement, that is, a new generation of high-output TENGs can be designed by effectively adjusting the corresponding contact area and electrode area.

17.
FEMS Microbiol Ecol ; 97(8)2021 08 09.
Artigo em Inglês | MEDLINE | ID: mdl-34302348

RESUMO

The seafloor sulfide structures of inactive vents are known to host abundant and diverse microorganisms potentially supported by mineralogy of sulfides. However, little is known about the diversity and distribution of microbial functions. Here, we used genome-resolved metagenomics to predict microbial metabolic functions and the contribution of horizontal gene transfer to the functionality of microorganisms inhabiting several hydrothermally inactive seafloor deposits among globally distributed deep-sea vent fields. Despite of geographically distant vent fields, similar microbial community patterns were observed with the dominance of Gammaproteobacteria, Bacteroidota and previously overlooked Candidatus Patescibacteria. Metabolically flexible Gammaproteobacteria are major potential primary producers utilizing mainly sulfur, iron and hydrogen as electron donors coupled with oxygen and nitrate respiration for chemolithoautotrophic growth. In addition to heterotrophic microorganisms like free-living Bacteroidota, Ca. Patescibacteria potentially perform fermentative recycling of organic carbon. Finally, we provided evidence that many functional genes that are central to energy metabolism have been laterally transferred among members within the community and largely within the same class. Taken together, these findings shed light on microbial ecology and evolution in inactive seafloor sulfide deposits after the cessation of hydrothermal activities.


Assuntos
Fontes Hidrotermais , Microbiota , Bactérias/genética , Filogenia , RNA Ribossômico 16S/genética , Sulfetos
18.
ISME J ; 15(3): 807-817, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33558686

RESUMO

Horizontal gene transfer (HGT) is thought to be an important driving force for microbial evolution and niche adaptation and has been show in vitro to occur frequently in biofilm communities. However, the extent to which HGT takes place and what functions are being transferred in more complex and natural biofilm systems remains largely unknown. To address this issue, we investigated here HGT and enrichment of gene functions in the biofilm community of the common kelp (macroalgae) Ecklonia radiata in comparison to microbial communities in the surrounding seawater. We found that HGTs in the macroalgal biofilms were dominated by transfers between bacterial members of the same class or order and frequently involved genes for nutrient transport, sugar and phlorotannin degradation as well as stress responses, all functions that would be considered beneficial for bacteria living in this particular niche. HGT did not appear to be driven by mobile gene elements, indicating rather an involvement of unspecific DNA uptake (e.g. natural transformation). There was also a low overlap between the gene functions subject to HGT and those enriched in the biofilm community in comparison to planktonic community members. This indicates that much of the functionality required for bacteria to live in an E. radiata biofilm might be derived from vertical or environmental transmissions of symbionts. This study enhances our understanding of the relative role of evolutionary and ecological processes in driving community assembly and genomic diversity of biofilm communities.


Assuntos
Transferência Genética Horizontal , Alga Marinha , Bactérias/genética , Biofilmes , Plâncton
19.
Nanoscale ; 12(45): 23225-23233, 2020 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-33206085

RESUMO

With the development of technology, environmental problems have become more and more acute and the use of electronic devices in harsh environments has gradually attracted attention. For example, the friction layer of triboelectric nanogenerators (TENGs) may be contaminated and corroded in harsh environments (such as acidic, alkaline or oily environments), resulting in damage or destruction of the TENGs. In this study, we use electrospinning followed by a sintering process to prepare a super-hydrophobic sintered polyvinyl alcohol-polytetrafluoroethylene (S-PVA-PTFE) composite membrane and general industrial oil-absorbing paper to construct a TENG. The maximum power density of the TENG is 261 mW m-2, it can light up 100 blue LEDs, and can power a variety of small electronic devices. Moreover, after 72 h of soaking the friction layer in a strong acid solution followed by a strong alkali solution, the performance of the TENG has no obvious change. The TENG can work stably in an oily working environment. The TENG provides a novel approach for self-powered sensors that work in harsh environments.

20.
ACS Appl Mater Interfaces ; 12(41): 46205-46211, 2020 Oct 14.
Artigo em Inglês | MEDLINE | ID: mdl-32933256

RESUMO

As a new type of energy harvesting and conversion device, nanogenerator can collect various energies from daily life environment and convert it into electrical energy; it has great flexibility and can provide power for small independent systems. The triboelectric nanogenerator (TENG) is widely concerned because of their high output energy density. However, in the case of an open circuit, there will be static charge accumulation on the friction surface. The high voltage generated by the accumulation of charge on the surface will bring the risk of electrostatic discharge (ESD) to nearby circuits. To solve this problem, we have used the ordered polymer nanofibers obtained by electrospinning technology to form an anisotropic triboelectric nanogenerator with better tensile properties and mechanical strength than disordered electrospinning TENG. By adjusting the effective contact area, the voltage output in the longitudinal direction is one order of magnitude higher than the voltage output in the lateral direction. When not in use, the nanogenerator can be rotated 90°, so static charge accumulation and circuit burnout can be avoided, providing an easy method of preventing ESD in a wearable environment.

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