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1.
Eur Biophys J ; 52(4-5): 321-332, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-37160443

RESUMO

The biotech industry has great interest in investigating therapeutic proteins in high concentration environments like human serum. The fluorescence detection system (Aviv-FDS) allows the performance of analytical ultracentrifuge (AUC) sedimentation velocity (SV) experiments in tracer or BOLTS protocols. Here, we compare six pooled human serum samples by AUC SV techniques and demonstrate the potential of this technology for characterizing therapeutic antibodies in serum. Control FDS SV experiments on serum alone reveal a bilirubin-HSA complex whose sedimentation is slowed by solution nonideality and exhibits a Johnston-Ogston (JO) effect due to the presence of high concentrations of IgG. Absorbance SV experiments on diluted serum samples verify the HSA-IgG composition as well as a significant IgM pentamer boundary at 19 s. Alexa-488 labeled Simponi (Golimumab) is used as a tracer to investigate the behavior of a therapeutic monoclonal antibody (mAb) in serum, and the sedimentation behavior of total IgG in serum. Serum dilution experiments allow extrapolation to zero concentration to extract so, while global direct boundary fitting with SEDANAL verifies the utility of a matrix of self- and cross-term phenomenological nonideality coefficients (ks and BM1) and the source of the JO effect. The best fits include weak reversible association (~ 4 × 103 M-1) between Simponi and total human IgG. Secondary mAbs to human IgG and IgM verify the formation of a 10.2 s 1:1 complex with human IgG and a 19 s complex with human IgM pentamers. These results demonstrate that FDS AUC allows a range of approaches for investigating therapeutic antibodies in human serum.


Assuntos
Imunoglobulina G , Humanos , Fluorescência , Imunoglobulina M , Ultracentrifugação/métodos
2.
Eur Biophys J ; 49(8): 687-700, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-33159218

RESUMO

The Aviv fluorescence detection system (Aviv-FDS) has allowed the performance of sedimentation velocity experiments on therapeutic antibodies in highly concentrated environments like formulation buffers and serum. Methods were implemented in the software package SEDANAL for the analysis of nonideal, weakly associating AUC data acquired on therapeutic antibodies and proteins (Wright et al. Eur Biophys J 47:709-722, 2018, Anal Biochem 550:72-83, 2018). This involved fitting both hydrodynamic, ks, and thermodynamic, BM1, nonideality where concentration dependence is expressed as s = so/(1 + ksc) and D = Do(1 + 2BM1c)/(1 + ksc) and so and Do are values extrapolated to c = 0 (mg/ml). To gain insight into the consequences of these phenomenological parameters, we performed simulations with SEDANAL of a monoclonal antibody as a function of ks (0-100 ml/g) and BM1 (0-100 ml/g). This provides a visual understanding of the separate and joint impact of ks and BM1 on the shape of high-concentration sedimentation velocity boundaries and the challenge of their unique determination by finite element methods. In addition, mAbs undergo weak self- and hetero-association (Yang et al. Prot Sci 27:1334-1348, 2018) and thus we have simulated examples of nonideal weak association over a wide range of concentrations (1-120 mg/ml). Here we demonstrate these data are best analyzed by direct boundary global fitting to models that account for ks, BM1 and weak association. Because a typical clinical dose of mAb is 50-200 mg/ml, these results have relevance for biophysical understanding of concentrated therapeutic proteins.


Assuntos
Anticorpos Monoclonais/metabolismo , Modelos Teóricos , Espectrometria de Fluorescência , Anticorpos Monoclonais/isolamento & purificação , Cinética , Termodinâmica , Ultracentrifugação
3.
Biophys Chem ; 108(1-3): 215-30, 2004 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-15043931

RESUMO

Analysis of sedimentation velocity data for indefinite self-associating systems is often achieved by fitting of weight average sedimentation coefficients (s(20,w)) However, this method discriminates poorly between alternative models of association and is biased by the presence of inactive monomers and irreversible aggregates. Therefore, a more robust method for extracting the binding constants for indefinite self-associating systems has been developed. This approach utilizes a set of fitting routines (SedAnal) that perform global non-linear least squares fits of up to 10 sedimentation velocity experiments, corresponding to different loading concentrations, by a combination of finite element simulations and a fitting algorithm that uses a simplex convergence routine to search parameter space. Indefinite self-association is analyzed with the software program isodesfitter, which incorporates user provided functions for sedimentation coefficients as a function of the degree of polymerization for spherical, linear and helical polymer models. The computer program hydro was used to generate the sedimentation coefficient values for the linear and helical polymer assembly mechanisms. Since this curve fitting method directly fits the shape of the sedimenting boundary, it is in principle very sensitive to alternative models and the presence of species not participating in the reaction. This approach is compared with traditional fitting of weight average data and applied to the initial stages of Mg(2+)-induced tubulin self-associating into small curved polymers, and vinblastine-induced tubulin spiral formation. The appropriate use and limitations of the methods are discussed.


Assuntos
Polímeros/química , Ultracentrifugação/métodos , Animais , Encéfalo/metabolismo , Substâncias Macromoleculares , Magnésio/química , Matemática , Modelos Químicos , Peso Molecular , Ligação Proteica , Software , Suínos , Tubulina (Proteína)/química , Tubulina (Proteína)/metabolismo , Vimblastina/química , Vimblastina/metabolismo
4.
Biophys J ; 85(2): 1053-62, 2003 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-12885652

RESUMO

Heavy meromyosin from scallop (scHMM) striated muscle is regulated by calcium binding to the essential light chain. The regulation can be modeled with a calcium-dependent equilibrium between on and off scHMM conformations. The observed rate constant for mant-ADP dissociation from scHMM is calcium dependent, and we show here that it can be used to define the equilibrium constant (K(eq)) between on and off conformations. The data show that K(eq) is markedly ionic strength dependent, with high salt (>/=200 mM) abolishing the off state even in the absence of calcium and low salt (<50 mM) favoring the off state even in the presence of calcium. Debye-Huckel plots of the equilibrium constant (K(eq)) for the on and off forms gave parallel slopes (5.94 +/- 0.33 and 6.36 +/- 0.17 M(-0.5)) in the presence and absence of calcium. The presence of an equilibrium mixture of two conformations was confirmed by sedimentation data and the effects of ADP, calcium and ionic strength were in qualitative agreement. Thus scHMM exists in two conformations that can be distinguished in sedimentation profiles and by the rate of release of mant-ADP. Increasing salt concentrations biases the system toward the on state, suggesting a role for ionic interactions in stabilizing the off state.


Assuntos
Difosfato de Adenosina/análogos & derivados , Difosfato de Adenosina/química , Cálcio/química , Modelos Químicos , Proteínas Motores Moleculares/química , Moluscos/química , Músculo Esquelético/química , Subfragmentos de Miosina/química , Cloreto de Potássio/química , ortoaminobenzoatos/química , Animais , Simulação por Computador , Fracionamento por Campo e Fluxo , Íons/química , Cinética , Ligação Proteica , Conformação Proteica , Relação Estrutura-Atividade
5.
Biochemistry ; 40(37): 11193-201, 2001 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-11551218

RESUMO

Calreticulin (CRT) is a soluble chaperone involved in the conformational maturation of glycoproteins in the endoplasmic reticulum. Using biochemical and biophysical techniques including circular dichroism, proteolysis, and analytical ultracentrifugation, we have determined the effects of calcium and zinc ions on the structural properties of human CRT. Circular dichroism analysis has shown that the binding of calcium and zinc ions to CRT induces no significant changes in the secondary structure of the protein but affects in very distinct ways the local tertiary packing of these elements. More specifically, these studies have revealed that CRT adopts a more rigid and thermally stable structure upon binding calcium ions and a more loosely packed and thermally destabilized structure upon binding zinc ions. Consistent with these results, proteolysis experiments demonstrated that the intrinsic conformational flexibility of CRT can be modulated toward either a decrease or an increase in susceptibility to cleavage by chymotrypsin upon binding calcium or zinc ions, respectively. Results from sedimentation analysis indicated that the global three-dimensional structure of CRT is essentially unchanged upon binding calcium ions. In marked contrast, CRT self-associates reversibly to form dimers upon binding zinc ions. Collectively, our results provide evidence that calcium and zinc ions induce strikingly different changes in the biochemical and structural properties of CRT.


Assuntos
Proteínas de Ligação ao Cálcio/metabolismo , Cálcio/metabolismo , Lectinas/metabolismo , Chaperonas Moleculares/metabolismo , Ribonucleoproteínas/metabolismo , Zinco/metabolismo , Sítios de Ligação , Cálcio/farmacologia , Proteínas de Ligação ao Cálcio/efeitos dos fármacos , Calreticulina , Cátions Bivalentes/metabolismo , Cátions Bivalentes/farmacologia , Dicroísmo Circular , Retículo Endoplasmático/metabolismo , Lectinas/efeitos dos fármacos , Chaperonas Moleculares/efeitos dos fármacos , Maleabilidade , Conformação Proteica/efeitos dos fármacos , Desnaturação Proteica , Transporte Proteico , Ribonucleoproteínas/efeitos dos fármacos , Zinco/farmacologia
6.
J Biol Chem ; 276(36): 34318-22, 2001 Sep 07.
Artigo em Inglês | MEDLINE | ID: mdl-11448958

RESUMO

We expressed the small subunit of smooth muscle myosin light chain phosphatase (MPs) in Escherichia coli, and have studied its molecular properties as well as its interaction with the targeting subunit (MPt). MPs (M(r) = 18,500) has an anomalously low electrophoretic mobility, running with an apparent M(r) of approximately 21,000 in sodium dodecyl sulfate-gel electrophoresis. CD spectroscopy shows that it is approximately 45% alpha-helix and undergoes a cooperative temperature-induced unfolding with a transition midpoint of 73 degrees C. Limited proteolysis rapidly degrades MPs to a stable C-terminal fragment (M(r) = 10,000) that retains most of the helical content. Rotary shadowing electron microscopy reveals that it is an elongated protein with two domains. Sedimentation velocity measurements show that recombinant MPt (M(r) = 107,000), intact MPs, and the 10-kDa MPs fragment are all dimeric, and that MPs and MPt form a complex with a molar mass consistent with a 1:1 heterodimer. Sequence analysis predicts that regions in the C-terminal portions of both MPs and MPt have high probabilities for coiled coil formation. A synthetic peptide from a region of MPs encompassing residues 77-116 was found to be 100% alpha-helical, dimeric, and formed a complex with MPt with a molecular mass corresponding to a heterodimer. Based on these results, we propose that MPs is an elongated molecule with an N-terminal head and a C-terminal stalk domain. It dimerizes via a coiled coil interaction in the stalk domain, and interacts with MPt via heterodimeric coiled coil formation. Since other proteins with known regulatory function toward MP also have predicted coiled coil regions, our results suggest that these regulatory proteins target MP via the same coiled coil strand exchange mechanism with MPt.


Assuntos
Músculo Liso/química , Fosfoproteínas Fosfatases/química , Proteínas Recombinantes/química , Animais , Sítios de Ligação , Galinhas , Dicroísmo Circular , DNA Complementar/metabolismo , Dimerização , Eletroforese em Gel de Poliacrilamida , Biblioteca Gênica , Microscopia Eletrônica , Músculo Liso/ultraestrutura , Fosfatase de Miosina-de-Cadeia-Leve , Ligação Proteica , Conformação Proteica , Isoformas de Proteínas , Estrutura Secundária de Proteína , Proteínas Recombinantes/metabolismo , Transdução de Sinais , Ultracentrifugação
7.
J Mol Biol ; 307(1): 137-47, 2001 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-11243809

RESUMO

The mechanism of calcium regulation of scallop myosin is not understood, although it is known that both myosin heads are required. We have explored possible interactions between the heads of heavy meromyosin (HMM) in the presence and absence of calcium and nucleotides by sedimentation and electron microscope studies. The ATPase activity of the HMM preparation was activated over tenfold by calcium, indicating that the preparation contained mostly regulated molecules. In the presence of ADP or ATP analogs, calcium increased the asymmetry of the HMM molecule as judged by its slower sedimentation velocity compared with that in EGTA. In the absence of nucleotide the asymmetry was high even in EGTA. The shift in sedimentation occurred with a sharp midpoint at a calcium level of about 0.5 microM. Sedimentation of subfragment 1 was not dependent on calcium or on nucleotides. Modeling accounted for the observed sedimentation behavior by assuming that both HMM heads bent toward the tail in the absence of calcium, while in its presence the heads had random positions. The sedimentation pattern showed a single peak at all calcium concentrations, indicating equilibration between the two forms with a t(1/2) less than 70 seconds. Electron micrographs of crosslinked, rotary shadowed specimens indicated that 81 % of HMM molecules in the presence of nucleotide had both heads pointing back towards the tail in the absence of calcium, as compared with 41 % in its presence. This is consistent with the sedimentation data. We conclude that in the "off" state, scallop myosin heads interact with each other, forming a rigid structure with low ATPase activity. When molecules are switched "on" by binding of calcium, communication between the heads is lost, allowing them to flex randomly about the junction with the tail; this could facilitate their interaction with actin in contracting muscle.


Assuntos
Cálcio/química , Moluscos/química , Subfragmentos de Miosina/química , Animais , Microscopia Eletrônica , Contração Muscular/fisiologia , Subfragmentos de Miosina/ultraestrutura , Nucleotídeos/química , Conformação Proteica , Ultracentrifugação
8.
Biochemistry ; 39(48): 14950-9, 2000 Dec 05.
Artigo em Inglês | MEDLINE | ID: mdl-11101311

RESUMO

Calreticulin (CRT) is an abundant soluble protein of the endoplasmic reticulum lumen that functions as a molecular chaperone for nascent glycoproteins. We have probed the three-dimensional structure of human CRT using a series of biochemical and biophysical approaches in an effort to understand the molecular basis of its chaperone function. Sedimentation analysis and chemical cross-linking experiments showed that CRT is monodisperse and monomeric in solution with a molecular mass (MW) of 46 +/- 1 kDa. This MW value together with a sedimentation coefficient, s(o)(20,w), of 2.71 S yielded a frictional ratio, f/f(0), of 1.65. Assuming CRT to be a prolate ellipsoid, we calculated an apparent length of 29.8 nm and diameter of 2.44 nm consistent with an asymmetric elongated molecule. These hydrodynamic dimensions account for the apparent anomalous elution position of CRT on gel filtration columns. Far-UV circular dichroism experiments showed that CRT has a cooperative thermal denaturation transition with a midpoint temperature of 42.5 degrees C suggesting a marginally stable structure. Proteolysis experiments showed that the highly acidic segment at the C-terminus of CRT is most susceptible to digest, consistent with the absence of a well-defined polypeptide backbone structure in this region of the protein. Temperature-dependent proteolysis with thermolysin revealed a stable core region within the N- and P-domains. A stable fragment encompassing most of the P-domain was also identified in the thermolytic mixture. Collectively, our results suggest that CRT is likely to be a flexible molecule in solution which may be important for its chaperone function.


Assuntos
Proteínas de Ligação ao Cálcio/química , Chaperonas Moleculares/química , Ribonucleoproteínas/química , Calreticulina , Cromatografia em Gel , Dicroísmo Circular , Reagentes de Ligações Cruzadas , Temperatura Alta , Humanos , Fragmentos de Peptídeos/metabolismo , Maleabilidade , Desnaturação Proteica , Proteínas Recombinantes/química , Soluções , Termolisina/metabolismo , Ultracentrifugação
9.
Methods Enzymol ; 323: 207-30, 2000.
Artigo em Inglês | MEDLINE | ID: mdl-10944754

RESUMO

This chapter has described a bioenergetic analysis of the interaction of sCD4 with an IgG1 and two IgG4 derivatives of an anti-sCD4 MAb. The MAbs have identical VH and VL domains but differ markedly in their CH and CL domains, raising the question of whether their antigen-binding chemistries are altered. We find the sCD4-binding kinetics and thermodynamics of the MAbs are indistinguishable, which indicates rigorously that the molecular details of the binding interactions are the same. We also showed the importance of using multiple biophysical methods to define the binding model before the bioenergetics can be appropriately interpreted. Analysis of the binding thermodynamics and kinetics suggests conformational changes that might be coupled to sCD4 binding by these MAbs are small or absent.


Assuntos
Anticorpos Monoclonais/química , Antígenos CD4/química , Antígenos CD4/imunologia , Imunoglobulina G/química , Sítios de Ligação de Anticorpos , Calorimetria/métodos , Varredura Diferencial de Calorimetria/métodos , Variação Genética , Humanos , Fragmentos Fab das Imunoglobulinas/química , Fragmentos Fc das Imunoglobulinas/química , Cadeias Pesadas de Imunoglobulinas/química , Cadeias Leves de Imunoglobulina/química , Cinética , Substâncias Macromoleculares , Microquímica/métodos , Modelos Moleculares , Conformação Proteica , Desnaturação Proteica , Ressonância de Plasmônio de Superfície/métodos , Termodinâmica
11.
Biophys J ; 77(6): 3208-17, 1999 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-10585942

RESUMO

The purpose of this study was to address the paradox of calponin localization with alpha-actinin and filamin, two proteins with tandem calponin homology (CH) domains, by determining the effect of these proteins on the binding of calponin to actin. The results show that actin can accommodate near-saturating concentrations of either calponin and alpha-actinin or calponin and filamin with little change or no change in ligand affinity. Little direct interaction occurred between alpha-actinin and calponin in the absence of actin, so this effect is not likely to explain the co-distribution of these proteins. Calponin, like alpha-actinin, induced elastic gel formation when added to actin. When alpha-actinin was added to newly formed calponin/actin gels, no change was seen in the mechanical properties of the gel compared to calponin and actin alone. However, when calponin was added to newly formed alpha-actinin/actin gels, the resulting gel was much stronger than the gels formed by either ligand alone. Furthermore, gels formed by the addition of calponin to alpha-actinin/actin exhibited a phenomenon known as strain hardening, a characteristic of mechanically resilient gels. These results add weight to the concept that one of the functions of calponin is to stabilize the actin cytoskeleton.


Assuntos
Actinina/metabolismo , Actinas/metabolismo , Proteínas de Ligação ao Cálcio/química , Proteínas de Ligação ao Cálcio/metabolismo , Animais , Fenômenos Biofísicos , Biofísica , Proteínas Contráteis/metabolismo , Citoesqueleto/química , Citoesqueleto/metabolismo , Estabilidade de Medicamentos , Filaminas , Géis , Técnicas In Vitro , Ligantes , Proteínas dos Microfilamentos/metabolismo , Modelos Biológicos , Músculo Esquelético/química , Músculo Esquelético/metabolismo , Ligação Proteica , Coelhos , Calponinas
12.
Artigo em Inglês | MEDLINE | ID: mdl-10410796

RESUMO

Analytical ultracentrifugation is a classical method of biochemistry and molecular biology. Because it is a primary technique, sedimentation can provide first-principle hydrodynamic and first-principle thermodynamic information for nearly any molecule, in a wide range of solvents and over a wide range of solute concentrations. For many questions, it is the technique of choice. This review stresses what information is available from analytical ultracentrifugation and how that information is being extracted and used in contemporary applications.


Assuntos
Proteínas/química , Ultracentrifugação/métodos , Bioquímica/métodos , Cinética , Biologia Molecular/métodos , Peso Molecular , Proteínas/isolamento & purificação , Solventes , Termodinâmica
13.
Mol Cell Biochem ; 194(1-2): 301-13, 1999 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-10391153

RESUMO

Calcium regulation in the human heart is impaired during idiopathic dilated cardiomyopathy (IDC). Here, we analyze the structural basis for impairment in the regulatory mechanism. Regulation of contractility was monitored by MgATPase and Ca2+-binding assays as a function of calcium. Myofibrillar proteolysis and expression of troponin T isoforms were established by gel electrophoresis and by Western blots. Myofibrillar ATPase assays in low salt however, revealed a drastic lowering of calcium sensitivity in IDC myofibrils as indicated by reductions in both activation by high calcium and in EGTA-mediated inhibition of MgATPase. Structural changes in myofilament proteins were found in most IDC hearts, specifically proteolysis of myosin light chain 2 (LC2), troponin T and I (TnT and TnI), and sometimes a large isoform shift in TnT. IDC did not induce mutations in LC2 and troponin C (TnC), as established by cDNA sequence data from IDC cases, thus, calcium binding to IDC myofibrils was unaffected. Reassociation of IDC myofibrils with native LC2 raised MgATPase activation at high Ca2+ to control levels, while repletion with intact, canine TnI/TnT restored inhibition at low Ca2+. A model, identifying possible steps in the steric blocking mechanism of regulation, is proposed to explain IDC-induced changes in Ca2+-regulation. Moreover, shifts in TnT isoforms may imply either a genetic or a compensatory factor in the development and pathogenesis of some forms of IDC.


Assuntos
Cálcio/metabolismo , Cardiomiopatia Dilatada/metabolismo , Miocárdio/metabolismo , Adenosina Trifosfatases/metabolismo , Adolescente , Adulto , Sequência de Bases , Cardiomiopatia Dilatada/enzimologia , Primers do DNA , DNA Complementar , Feminino , Humanos , Hidrólise , Masculino , Pessoa de Meia-Idade , Miocárdio/enzimologia , Cadeias Leves de Miosina/metabolismo , Isoformas de Proteínas/metabolismo , Serina Endopeptidases/metabolismo , Troponina/genética , Troponina/metabolismo
14.
J Biol Chem ; 273(28): 17702-7, 1998 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-9651368

RESUMO

The motor function of smooth muscle myosin is activated by phosphorylation of the regulatory light chain (RLC) at Ser19. However, the molecular mechanism by which the phosphorylation activates the motor function is not yet understood. In the present study, we focused our attention on the role of the central helix of RLC for regulation. The flexible region at the middle of the central helix (Gly95-Pro98) was substituted or deleted to various extents, and the effects of the deletion or substitution on the regulation of the motor activity of myosin were examined. Deletion of Gly95-Asp97, Gly95-Thr96, or Thr96-Asp97 decreased the actin-translocating activity of myosin a little, but the phosphorylation-dependent regulation of the motor activity was not disrupted. In contrast, the deletion of Gly95-Pro98 of RLC completely abolished the actin translocating activity of phosphorylated myosin. However, the unregulated myosin long subfragment 1 containing this RLC mutant showed motor activity the same as that containing the wild type RLC. Since long subfragment 1 motor activity is unregulated by phosphorylation, i.e. constitutively active, these results suggest that the deletion of these residues at the central helix of RLC disrupts the phosphorylation-mediated activation mechanism but not the motor function of myosin itself. On the other hand, the elimination of Pro98 or substitution of Gly95-Pro98 by Ala resulted in the activation of actin translocating activity of dephosphorylated myosin, whereas it did not affect the motor activity of phosphorylated myosin. Together, these results clearly indicate the importance of the hinge at the central helix of RLC on the phosphorylation-mediated regulation of smooth muscle myosin.


Assuntos
Músculo Liso/fisiologia , Cadeias Leves de Miosina/fisiologia , Actinas/metabolismo , Adenosina Trifosfatases/metabolismo , Sequência de Aminoácidos , Animais , Sequência de Bases , Primers do DNA , Ativação Enzimática , Dados de Sequência Molecular , Cadeias Leves de Miosina/química , Cadeias Leves de Miosina/metabolismo , Fosforilação , Conformação Proteica , Coelhos , Perus
15.
Eur J Biochem ; 253(1): 57-66, 1998 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-9578461

RESUMO

Calcyclin (CaCY) is a member of the S100 subfamily of helix-loop-helix (EF-hand) calcium-binding proteins. Human CaCY was overexpressed in Escherichia coli and purified with an overall yield of 40 mg/l culture. Ca2+ and Zn2+ binding properties of CaCY were examined with respect to the oxidation state of the single Cys residue at position 3. CaCY with the SH group either reduced, blocked or oxidized stays as a dimer as shown by analytical ultracentrifugation. Upon binding of Ca2+, CaCY exhibits 30% enhancement of the Tyr fluorescence, the apparent binding constant (Ka) being 2.8-5.8x10(4) M(-1). Oxidized CaCY binds Ca2+ approximately twice as weakly than its reduced form. The affinity for Ca2+ is increased in the presence of caldesmon, which could be a potential target molecule. Fully reduced CaCY binds Zn2+ with an affinity of at least 1.0x10(7) M(-1). As compared to Ca2+, Zn2+ binding results in a three times greater enhancement of the Tyr fluorescence. Saturation occurs at a Zn2+/CaCY ratio of 2:1. The reactivity of Cys3 is reduced by Zn2+ binding, although oxidized CaCY still binds Zn2+. On the basis of the effects of thiol-directed labels on the affinities for Ca2+ and Zn2+, the fluorescence changes accompanying the binding, and the CaCY reactivity with a hydrophobic probe, it was concluded that the two cations bind to CaCY at different sites: Ca2+ binds probably at the EF-hand type sites, whereas binding of at least one Zn2+ ion involves the Cys residue, and results in a different structural change.


Assuntos
Proteínas de Ligação ao Cálcio/metabolismo , Cálcio/metabolismo , Proteínas de Ciclo Celular , Proteínas S100 , Zinco/metabolismo , Sequência de Bases , Sítios de Ligação , Cálcio/farmacologia , Proteínas de Ligação ao Cálcio/química , Proteínas de Ligação ao Cálcio/genética , Cisteína/química , Primers do DNA/genética , Escherichia coli/genética , Humanos , Técnicas In Vitro , Cinética , Oxirredução , Conformação Proteica/efeitos dos fármacos , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Proteína A6 Ligante de Cálcio S100 , Espectrometria de Fluorescência , Compostos de Sulfidrila/química , Tirosina/química , Zinco/farmacologia
16.
J Biol Chem ; 272(44): 27618-22, 1997 Oct 31.
Artigo em Inglês | MEDLINE | ID: mdl-9346899

RESUMO

Diphtheria toxin (DT) undergoes a rapid conformational change in response to the acidity encountered within endosomes. That transition is integral to the passage of its catalytic domain into the cytosol and thus its lethal action. The importance of this translocation mechanism led us to develop several monoclonal antibodies that bind DT at neutral pH but spontaneously release the toxin when critical epitopes denature or unfold upon lowering the pH to 4.5-5.5. Hybridomas were selected using a microtiter plate assay that measured the pH-dependent detachment of antibody from immobilized toxin. The acid-sensitive epitopes involved were on the catalytic, transmembrane, and receptor binding domains of DT. This pH-induced disruption of the binding of toxin to these monoclonal antibodies was analyzed by sedimentation velocity ultracentrifugation. Antibody combining sites were fully occupied at pH 5.5, partially bound at pH 5.0, and totally empty at pH 4.5. It was estimated that the Ka for antibody-toxin binding was approximately 1000-fold lower at pH 5.0 than at neutral pH. This novel acid-triggered release mechanism provides a basis for delivery of antibody-bound toxin into cells accompanied by its immediate dissociation as the complex enters acidic vesicles.


Assuntos
Anticorpos Monoclonais/imunologia , Toxina Diftérica/metabolismo , Endossomos/metabolismo , Sítios de Ligação de Anticorpos , Toxina Diftérica/imunologia , Concentração de Íons de Hidrogênio , Radioisótopos do Iodo , Conformação Proteica
17.
J Lipid Res ; 38(8): 1649-59, 1997 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9300787

RESUMO

The central function of lipoprotein lipase (LpL) is to hydrolyze triacylglycerols in chylomicrons and very low density lipoproteins. We have examined the binding of purified milk lipoprotein lipase to homogeneous synthetic lipid emulsions. Emulsions composed of either naturally occurring ester-linked lipids or the non-hydrolyzable ether analogues were prepared by sonication and pressure extrusion, and fractionated by sucrose density gradient centrifugation. Flotation analysis using the analytical ultracentrifuge indicated that the individual fractions were relatively homogeneous with respect to size with flotation coefficients and molecular weights for the separated fractions ranging from 100 to 1100 S and 5.2 x 10(7) to 6.0 x 10(8), respectively. Purified milk lipoprotein lipase bound with high affinity and in a saturable manner to emulsions prepared from the non-hydrolyzable ether-linked lipid analogues of 1-oleoyl, 2-palmitoyl phosphatidylcholine and triolein. At low concentrations of LpL, the enzyme caused aggregation of the emulsion particles by interparticle cross-linking. At higher LpL concentrations, the flotation coefficient of the emulsions decreased significantly with a concomitant increase in particle density. At saturation, the number of LpL monomers bound to lipid particles of radii 67, 75, and 79 nm was 1315, 1449, and 1466, respectively. The results demonstrate close packing of LpL on the lipid surface and are consistent with there being little disruption to the overall structure of the emulsion particle.


Assuntos
Metabolismo dos Lipídeos , Lipase Lipoproteica/metabolismo , Animais , Sítios de Ligação , Bovinos , Dimiristoilfosfatidilcolina/metabolismo , Emulsões , Técnicas In Vitro , Cinética , Lipídeos/química , Lipídeos/isolamento & purificação , Lipase Lipoproteica/isolamento & purificação , Fosfatidilcolinas/metabolismo , Propriedades de Superfície , Triglicerídeos/metabolismo , Trioleína/metabolismo , Ultracentrifugação
18.
J Mol Biol ; 268(3): 655-65, 1997 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-9171289

RESUMO

The scaffolding protein of Salmonella typhimurium bacteriophage P22 is a 33.6 kDa protein required both in vivo and in vitro for the polymerization of the viral coat protein into closed T = 7 icosahedral procapsids. In vitro assembly reaction kinetics have previously been found to vary between second and third order with respect to scaffolding protein concentration, suggesting that dimers and/or higher-order oligomers may be the active species in assembly. Analytical ultracentrifugation experiments suggest that scaffolding protein undergoes a rapidly-reversible monomer/dimer/tetramer equilibrium, with higher association constants at 4 degrees C than at 20 degrees C. Under conditions in which in vitro assembly reactions are carried out (30 to 1000 microg/ml scaffolding protein, 20 degrees C), monomers are the predominant species, but the concentration of dimers is significant. A mutant scaffolding protein, R74C/L177I, which forms disulfide-linked dimers, catalyzed procapsid assembly at a higher rate than did the wild-type scaffolding protein; preincubation in dithiothreitol had little effect on the wild-type protein, but greatly reduced the activity of the mutant. These findings suggest that dimers and/or higher-order oligomers of scaffolding protein are active species in the assembly of P22.


Assuntos
Bacteriófago P22/química , Capsídeo/química , Conformação Proteica , Bacteriófago P22/fisiologia , Capsídeo/biossíntese , Cinética , Peso Molecular , Polímeros , Salmonella typhimurium/virologia , Ultracentrifugação , Montagem de Vírus/fisiologia
19.
J Cell Biol ; 136(2): 331-43, 1997 Jan 27.
Artigo em Inglês | MEDLINE | ID: mdl-9015304

RESUMO

The Arp2/3 complex, first isolated from Acanthamoeba castellani by affinity chromatography on profilin, consists of seven polypeptides; two actin-related proteins, Arp2 and Arp3; and five apparently novel proteins, p40, p35, p19, p18, and p14 (Machesky et al., 1994). The complex is homogeneous by hydrodynamic criteria with a Stokes' radius of 5.3 nm by gel filtration, sedimentation coefficient of 8.7 S, and molecular mass of 197 kD by analytical ultracentrifugation. The stoichiometry of the subunits is 1:1:1:1:1:1:1, indicating the purified complex contains one copy each of seven polypeptides. In electron micrographs, the complex has a bilobed or horseshoe shape with outer dimensions of approximately 13 x 10 nm, and mathematical models of such a shape and size are consistent with the measured hydrodynamic properties. Chemical cross-linking with a battery of cross-linkers of different spacer arm lengths and chemical reactivities identify the following nearest neighbors within the complex: Arp2 and p40; Arp2 and p35; Arp3 and p35; Arp3 and either p18 or p19; and p19 and p14. By fluorescent antibody staining with anti-p40 and -p35, the complex is concentrated in the cortex of the ameba, especially in linear structures, possibly actin filament bundles, that lie perpendicular to the leading edge. Purified Arp2/3 complex binds actin filaments with a Kd of 2.3 microM and a stoichiometry of approximately one complex molecule per actin monomer. In electron micrographs of negatively stained samples, Arp2/3 complex decorates the sides of actin filaments. EDC/NHS cross-links actin to Arp3, p35, and a low molecular weight subunit, p19, p18, or p14. We propose structural and topological models for the Arp2/3 complex and suggest that affinity for actin filaments accounts for the localization of complex subunits to actin-rich regions of Acanthamoeba.


Assuntos
Acanthamoeba/química , Actinas/química , Actinas/metabolismo , Proteínas Contráteis , Proteínas do Citoesqueleto , Proteínas de Protozoários/química , Acanthamoeba/metabolismo , Acanthamoeba/ultraestrutura , Proteína 2 Relacionada a Actina , Proteína 3 Relacionada a Actina , Actinas/isolamento & purificação , Actinas/ultraestrutura , Animais , Cromatografia de Afinidade , Cromatografia em Gel , Reagentes de Ligações Cruzadas , Imunofluorescência , Substâncias Macromoleculares , Proteínas dos Microfilamentos/metabolismo , Microscopia Eletrônica , Peso Molecular , Profilinas , Proteínas de Protozoários/isolamento & purificação , Proteínas de Protozoários/metabolismo , Proteínas de Protozoários/ultraestrutura , Ultracentrifugação
20.
Proc Natl Acad Sci U S A ; 94(1): 91-6, 1997 Jan 07.
Artigo em Inglês | MEDLINE | ID: mdl-8990166

RESUMO

While the structures of skeletal and smooth muscle myosins are homologous, they differ functionally from each other in several respects, i.e., motor activities and regulation. To investigate the molecular basis for these differences, we have produced a skeletal/smooth chimeric myosin molecule and analyzed the motor activities and regulation of this myosin. The produced chimeric myosin is composed of the globular motor domain of skeletal muscle myosin (Met1-Gly773) and the C-terminal long alpha-helix domain of myosin subfragment 1 as well as myosin subfragment 2 (Gly773-Ser1104) and light chains of smooth muscle myosin. Both the actin-activated ATPase activity and the actin-translocating activity of the chimeric myosin were completely regulated by light chain phosphorylation. On the other hand, the maximum actin-activated ATPase activity of the chimeric myosin was the same as skeletal myosin and thus much higher than smooth myosin. These results show that the C-terminal light chain-associated domain of myosin head solely confers regulation by light chain phosphorylation, whereas the motor domain determines the rate of ATP hydrolysis. This is the first report, to our knowledge, that directly determines the function of the two structurally separated domains in myosin head.


Assuntos
Adenosina Trifosfatases/metabolismo , Músculo Esquelético , Músculo Liso , Miosinas/metabolismo , Actinas/metabolismo , Animais , Galinhas , Ativação Enzimática , Modelos Moleculares , Movimento , Cadeias Leves de Miosina/metabolismo , Miosinas/efeitos dos fármacos , Miosinas/genética , Miosinas/ultraestrutura , Concentração Osmolar , Fosforilação , Cloreto de Potássio/farmacologia , Conformação Proteica , Proteínas Recombinantes de Fusão/efeitos dos fármacos , Proteínas Recombinantes de Fusão/metabolismo , Proteínas Recombinantes de Fusão/ultraestrutura , Ultracentrifugação
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