Nocardioides jiangxiensis sp. nov., a novel actinobacterium isolated from lakeside soil, exhibiting the biosynthesis potential of mycofactocin.

A Gram-stain-positive, rod-shaped, non-spore-forming and non-motile bacterium, designated WY-20T, was isolated from a lakeside soil sample collected in Jiangxi Province, PR China. Growth was observed at 20-42 °C (optimum 30 °C), pH 5.0-8.0 (optimum pH 7.0) and salinity of 0-3.0% (w/v; optimum 0.5%). Phylogenetic analysis based on the 16S rRNA gene sequences indicated that strain WY-20T belongs to the genus Nocardioides and showed the highest sequence similarity (98.1%) to N. phosphati WYH11-7T, followed by N. cavernaquae K1W22B-1T (97.8%), N. marmoriterrae JOS5-1T (97.2%) and N. jensenii NBRC 14755T (97.1%). The average nucleotide identity and digital DNA-DNA hybridization values between strains WY-20T and N. phosphati WYH11-7T were 83.5% and 26.2%, respectively. The predominant fatty acids (≥ 10% of the total fatty acids) were C18:1ω9c, C17:0, C16:0, summed feature 8 (C18:1ω7c and/or C18: 1ω6c) and C17:1ω9c. The major menaquinone was MK-8 (H4). The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and two unidentified phospholipids. In addition, meso-diaminopimelic acid was the diagnostic diamino acid in the cell-wall peptidoglycan. Based on phenotypic, genotypic and phylogenetic pieces of evidence, strain WY-20T represents a novel species in the genus Nocardioides, for which the name Nocardioides jiangxiensis sp. nov. is proposed. The type strain is WY-20T (= GDMCC 4.317T = KACC 23379T).

SARS-CoV-2 nucleocapsid protein enhances the level of mitochondrial reactive oxygen species.

Coronavirus disease 2019 (COVID-19) pathogenesis is influenced by reactive oxygen species (ROS). Nevertheless, the precise mechanisms implicated remain poorly understood. The nucleocapsid (N) protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the main driver for this condition, is a structural protein indispensable for viral replication and assembly, and its role in ROS production has not been reported. This study shows that SARS-CoV-2 N protein expression enhances mitochondrial ROS level. Bulk RNA-sequencing suggests of aberrant redox state of the electron transport chain. Accordingly, this protein hinders ATP production but simultaneously augments the activity of complexes I and III, and most mitochondrially encoded complex I and III proteins are upregulated by it. Mechanistically, N protein of SARS-CoV-2 shows significant mitochondrial localization. It interacts with mitochondrial transcription components and stabilizes them. Moreover, it also impairs the activity of antioxidant enzymes with or without detectable interaction.

Hemocytes in blue mussel Mytilus edulis adopt different energy supply modes to cope with different BDE-47 exposures.

The energetic response of blue mussel Mytilus edulis when coping with tetrabromodiphenyl ether (BDE-47) exposure was evaluated from the perspective of alterations in energy supply mode, and the possible regulating mechanism was discussed based on a 21-day bioassay. The results showed that the energy supply mode changed with concentration: 0.1 µg/L BDE-47 decreased the activity of isocitrate dehydrogenase (IDH), succinate dehydrogenase (SDH), malate dehydrogenase and oxidative phosphorylation, suggesting inhibition of the tricarboxylic (TCA) acid cycle and aerobic respiration. The coincident increase in phosphofructokinase and the decrease in lactate dehydrogenase (LDH) indicated that glycolysis and anaerobic respiration were increased. When exposed to 1.0 µg/L BDE-47, M. edulis mainly utilized aerobic respiration, but lowered glucose metabolism as indicated by the decrease in glutamine and l-leucine was suggested to be involved in this process, which was differed from that in the control. The reoccurrence of IDH and SDH inhibition as well as LDH elevation indicated attenuation of aerobic and anaerobic respiration when the concentration increased to 10 µg/L, but severe protein damage was evidenced based on the elevation of amino acids and glutamine. Under the 0.1 µg/L BDE-47, activation of the AMPK-Hif-1a signaling pathway promoted the expression of glut1, which was the potential mechanism for the improvement of anaerobic respiration, and further activated glycolysis and anaerobic respiration. This study shows that the energy supply mode experienced a conversion from aerobic respiration under normal conditions to anaerobic mode in the low BDE-47 treatment and back to aerobic respiration with increasing BDE-47 concentrations, which may represent a potential mechanism for mussel physiological responses when faced with different levels of BDE-47 stress.

sBGC-hm: an atlas of secondary metabolite biosynthetic gene clusters from the human gut microbiome.

SUMMARY: Microbial secondary metabolites exhibit potential medicinal value. A large number of secondary metabolite biosynthetic gene clusters (BGCs) in the human gut microbiome, which exhibit essential biological activity in microbe-microbe and microbe-host interactions, have not been adequately characterized, making it difficult to prioritize these BGCs for experimental characterization. Here, we present the sBGC-hm, an atlas of secondary metabolite BGCs allows researchers to explore the potential therapeutic benefits of these natural products. One of its key features is the ability to assist in optimizing the BGC structure by utilizing the gene co-occurrence matrix obtained from Human Microbiome Project data. Results are viewable online and can be downloaded as spreadsheets. AVAILABILITY AND IMPLEMENTATION: The database is openly available at https://www.wzubio.com/sbgc. The website is powered by Apache 2 server with PHP and MariaDB.

Effectiveness of comprehensive intervention on primary dental caries in 3-year-old children in Bengbu / 中国学校卫生

Objective@#To explore the effectiveness of the comprehensive intervention on prevention of deciduous primary caries in 3-year-old children, so as so provide reference for the prevention, health care and treatment of oral caries.@*Methods@#Three-year-old children selected by drawing lots from 10 public kindergartens in 5 districts of Bengbu were examined in 2021, and were randomly divided into intervention group ( n =300) and control group ( n =300). During the initial examination, caries loss (dmf) including dental caries, missing teeth, filling teeth were assessed in the two groups. At the initial examination, the intervention group received caries intervention while no intervention was administered in the non-intervention group until half a year later. Intervention measures included education, diet, self-cleaning and fluoride application intervention. The number of cases and the mean of caries loss in the two groups were compared by χ 2 test.@*Results@#Before the intervention, 43 children in the control group suffered from caries, with 88 dmf, including 44 dmf for boys and 44 dmf for girls. There were 45 children in the intervention group, with 101 dmf, including 49 dmf for boys and 52 dmf for girls. There was no significant difference in the number of dmf between the intervention group and the control group ( χ 2=0.91, P >0.05), and there was no significant difference in the prevalence rate (15.0%, 14.3%, χ 2=0.05, P >0.05). After the intervention, there were 26 new dental caries and 43 dmf in intervention group, including 25 dmf for boys and 18 dmf for girls. In the control group, there were 83 new dental caries and 168 dmf, including 72 dmf for boys and 96 dmf for girls. Compared with the control group, the new dmf in the intervention group was significantly different ( χ 2=75.38, P < 0.05). The number of new dental caries patients in the intervention group was significantly different from that in the control group ( χ 2=36.42, P <0.05).@*Conclusion@#Comprehensive interventions to prevent dental caries can significantly reduce the incidence of primary teeth caries in children. It is suggested to intervene dental caries as early as possible to reduce the incidence of dental caries and other oral diseases.

Chemical composition, antimicrobial, and antioxidant cytotoxic activities of essential oil from Actinidia arguta.

Chemical composition, antimicrobial, antioxidant, and cytotoxic properties of Actinidia arguta essential oil (AEO) were evaluated. Gas chromatography-mass spectrometry analysis identified 56 chemical compounds, with the most abundant being Squalene (23.08%), γ-sitrostorol (8.10%), and ß-Tocopherol (7.01%). Whereas the AEO had significant antimicrobial activity against Staphylococcus aureus and Saccharomyces cerevisiae, it showed mild efficacy against Bacillus subtilis and Microsporum canis. On the contrary, the Gram-negative bacteria, Escherichia coli and Pseudomonas aeruginosa, were not susceptible to the AEO pressure. On the other hand, the AEO exhibited strong antioxidant activity against 1,1-diphenyl-2-picrylhydrazyl (DPPH), ß-carotene, and hydroxyl radicals, with IC50 values of 117.60, 73.60, and 35.15 µg/mL, respectively. Additionally, compared to the PC-3 or HT-29 cell lines, the A549 cells were more susceptible to the AEO (IC50; 6.067 mg/mL). Besides, the confocal laser scanning microscopy imaging showed that 16 mg/mL of the AEO-induced apoptosis in the A549 cell lines. Our data indicated that the AEO might be useful in the food and pharmaceutical industry. Preparation of Actinidia arguta essential oil (a) and schematic overview of the experiment (b).

An Explanation Based on Energy-Related Changes for Blue Mussel Mytilus edulis Coping With Seawater Acidification.

As ocean acidification (OA) is gradually increasing, concerns regarding its ecological impacts on marine organisms are growing. Our previous studies have shown that seawater acidification exerted adverse effects on physiological processes of the blue mussel Mytilus edulis, and the aim of the present study was to obtain energy-related evidence to verify and explain our previous findings. Thus, the same acidification system (pH: 7.7 or 7.1; acidification method: HCl addition or CO2 enrichment; experimental period: 21d) was set up, and the energy-related changes were assessed. The results showed that the energy charge (EC) and the gene expressions of cytochrome C oxidase (COX) reflecting the ATP synthesis rate increased significantly after acidification treatments. What's more, the mussels exposed to acidification allocated more energy to gills and hemocytes. However, the total adenylate pool (TAP) and the final adenosine triphosphate (ATP) in M. edulis decreased significantly, especially in CO2 treatment group at pH 7.1. It was interesting to note that, TAP, ATP, and COXs gene expressions in CO2 treatment groups were all significantly lower than that in HCl treatment groups at the same pH, verifying that CO2-induced acidification exhibited more deleterious impacts on M. edulis, and ions besides H+ produced by CO2 dissolution were possible causes. In conclusion, energy-related changes in M. edulis responded actively to seawater acidification and varied with different acidification conditions, while the constraints they had at higher acidification levels suggest that M. edulis will have a limited tolerance to increasing OA in the future.

Environmental fate and aquatic effects of propylbenzenes and trimethylbenzenes: A review.

Propylbenzenes (PBZs) and trimethylbenzenes (TMBs) are aromatic hydrocarbon compounds widely used in many industries with potential release to different environments. The fate and aquatic effects of these compounds in the environment were evaluated. Evidence suggests that PBZs and TMBs will rapidly volatilise from water and bioaccumulate in aquatic organisms. Under both aerobic and anaerobic conditions, these compounds are readily biodegradable, whereby 1,2,3-TMB is more stable than the others. In air, all five compounds have atmospheric photo-oxidation half-lives ranging from 0.31 to 1.55 d. The toxicity data collectively show that PBZs, 1,2,4- and 1,3,5-TMB pose high acute toxicity effects on aquatic organisms. Furthermore, freshwater species are more sensitive to these compounds than marine species. There is not much data on the occurrence of PZBs and TMBs in the aquatic environment. This review presents the current state of knowledge on the fate of PBZs and TMBs. Moreover, the acute and joint toxicity of these compounds to different aquatic organisms, especially in marine organisms, warrants further investigation.

Depicting an energetic chain involved in physiological responses of blue mussel Mytilus edulis coping with BDE-47 exposure.

Depiction on an energetic chain in terms of assimilation, allocation and consumption as well as the linkage between energetic alteration and physiological process was performed in blue mussel Mytilus edulis coping with tetrabromodiphenyl ether (BDE-47) based on a 21-day bioassay to shed light on the possible mechanism from energetic perspective. The filtration was hindered along with BDE-47 concentration increment and the influence of digestion was suggested according to the combination of the digestive enzymatic activities' alteration and digestive gland tissue impairment, both of which decided the energy availability reduction. Energy consumption indicated by the electron transport system activity was firstly inhibited while was greatly increased with BDE-47 increment, and the cellular energy allocation and adenylate pool were decreased simultaneously. An energetic chain was thus depicted: it tended to reduce energy absorption, elevate the energy consumption and decrease the energy metabolism with BDE-47 exposure, and M. edulis adopted the energetic strategy with variation regarding to the stressing level, suggesting as the preference switched from protein utilization to lipid utilization with the concentration increment. A consistence was observed in index of growth and survival with the change of energy allocation, inferring the energetic involvement in sustaining the viability of the mussel.

Acclimation of Isochrysis galbana Parke (Isochrysidaceae) for enhancing its tolerance and biodegradation to high-level phenol in seawater.

Marine microalgae with high removal efficiency of phenol are needed for the remediation of polluted seawater in cases involving phenol spills. To achieve this purpose, adaptive laboratory evolution (ALE) was performed by a microalga Isochrysis galbana Parke MACC/H59, which is capable of degrading phenol at concentrations of less than 100 mg L-1 in 4 d. Two acclimation conditions were used: (i) 90 d at 100 mg L-1 phenol, and (ii) 90 d at 100 mg L-1 phenol followed by another 90 d at 200 mg L-1 phenol. By doing so, two strains (PAS-1 and PAS-2) could be obtained respectively. They grew rapidly at phenol concentrations up to 200 mg L-1 and 300 mg L-1, respectively, with a specific growth rate 2.52-3.40 times and 1.93-3.23 times that of the control (without phenol). Also, both strains had a higher removal capacity of phenol than the unacclimated alga. Phenol at an initial concentration of 200 mg L-1 was completely removed in 5 d thereby. For 300 mg L-1 phenol, a removal efficiency of 92% was achieved in 10 days by using PAS-2, with a removal rate constant of 30.01 d-1 (about twice that of PAS-1) and a half-life of 4.90 d (about half that of PAS-1), showing that a better strain may be obtained by extending the acclimation time. The enhancement of phenol biodegradation can be explained by the elevated activity of phenol hydroxylase (PH) in both strains. These results indicated that ALE could be an efficient tool used to enhance the tolerance and biodegradation of marine microalgae to phenol in seawater.

Title: CO2 and HCl-induced seawater acidification impair the ingestion and digestion of blue mussel Mytilus edulis.

Anthropogenic CO2 emissions lead to seawater acidification that reportedly exerts deleterious impacts on marine organisms, especially on calcifying organisms such as mussels. A 21-day experiment focusing on the impacts of seawater acidification on the blue mussel, Mytilus edulis, was performed in this study, within which two acidifying treatments, CO2 enrichment and HCl addition, were applied. Two acidifying pH values (7.7 and 7.1) and the alteration of the key physiological processes of ingestion and digestion were estimated. To thoroughly investigate the impact of acidification on mussels, a histopathological study approach was adopted. The results showed that: (1) Seawater acidification induced either by CO2 enrichment or HCl addition impaired the gill structure. Transmission electron microscope (TEM) results suggested that the most obvious impacts were inflammatory lesions and edema, while more distinct alterations, including endoplasmic reticulum edema, nuclear condensation and chromatin plate-like condensation, were placed in the CO2-treated groups compared to HCl-treated specimens. The ciliary activity of the CO2 group was significantly inhibited simultaneously, leading to an obstacle in food intake. (2) Seawater acidification prominently damaged the structure of digestive glands, and the enzymatic activities of amylase, protease and lipase significantly decreased, which might indicate that the digestion was suppressed. The negative impacts induced by the CO2 group were more severe than that by the HCl group. The present results suggest that acidification interferes with the processes of ingestion and digestion, which potentially inhibits the energy intake of mussels.

Using the Marine Rotifer Brachionus plicatilis as an Endpoint to Evaluate Whether ROS-Dependent Hemolytic Toxicity Is Involved in the Allelopathy Induced by Karenia mikimotoi.

The toxic effects of the typically noxious bloom-forming dinoflagellate Karenia mikimotoi were studied using the allelopathic experimental system under controlled laboratory conditions. The potency of intact cell suspensions with whole cells, cell-free culture filtrate in different growth phases, and lysed cells with ultrasonication were compared, and the growth and reproduction of the marine rotifer Brachionus plicatilis were used as endpoints to evaluate toxic differences. The intact cell suspension resulted the most significant growth inhibition, including lethality, on the growth of B. plicatilis (p < 0.05). Lysed culture medium treated with ultrasonication and the cell-free culture filtrates at either the exponential or stationary phase exhibited limited negative impacts compared to the control according to changes in the population growth rate (r) and survival rate (p > 0.05). Reproduction presented a similar tendency to change, and the number of eggs produced per individual, as well as spawning period decreased in the whole cell and lysed cell suspensions. The key parameters in the lift table include the net reproductive rate (R0) and the intrinsic rate of increase (rm), which were more sensitive to treatment and were significantly suppressed compared to that of the control. The addition of the ROS inhibitor N-acetylcysteine (NAC) could not change the growth or reproduction patterns. Moreover, substantial hemolytic toxicity was found in the treatment of the intact cell suspension (p < 0.05), while limited toxicity was found in other treatments compared to that of the control. K. mikimotoi was speculated to secrete allelopathic substances onto the cell surface, and direct cell contact was necessary for allelopathic toxicity in B. plicatilis. Reactive oxygen species (ROS)-independent hemolytic toxicity was assumed to be the explanation for what was observed.

The ROS-mediated pathway coupled with the MAPK-p38 signalling pathway and antioxidant system plays roles in the responses of Mytilus edulis haemocytes induced by BDE-47.

Our previous study found that BDE-47 could change the immune function of haemocytes in Mytilus edulis, and reactive oxygen species (ROS) might be involved in the process of physiological alteration. Here, we aimed to better understand this relationship. To accomplish this, we analysed changes in different ROS as well as various antioxidant system components. Additionally, the expression of MAPK-p38, a signalling protein regulated by ROS that helps to regulate numerous cellular processes, was also analysed. BDE-47 was given at low, medium, and high amounts. The results showed that (1) BDE-47 significantly affected ROS component levels in haemocytes. O2- content was increased under all conditions. H2O2 content was also increased under all conditions, except in the middle concentration group. In contrast, OH content was increased in the low and middle concentration groups and decreased in the high concentration group. (2) Estimations of the antioxidant systems revealed concentration-dependent changes. Catalase activity was increased throughout the experiment, while superoxide dismutase (SOD) exhibited a decreasing trend in the tested groups with an increase of exposure time. On day 21, only the high concentration group showed a slight increase in SOD activity compared to the control. Furthermore, glutathione peroxidase and glutathione reductase activity increased in the low and middle concentration groups but decreased in the high concentration group. The GSH/GSSG ratio increased for all treatments over time, indicating that changes in redox status occurred. (3) MAPK-p38 was activated following BDE-47 exposure. Based on our previous study, we speculate that BDE-47 exposure induces ROS production and affects the ROS-mediated pathway, which may explain the resultant functional damage observed in haemocytes. Furthermore, BDE-47 also affected the antioxidant system and altered redox status, although these changes did not ameliorate the damage caused by ROS.

Seawater acidification induced immune function changes of haemocytes in Mytilus edulis: a comparative study of CO2 and HCl enrichment.

The present study was performed to evaluate the effects of CO2- or HCl-induced seawater acidification (pH 7.7 or 7.1; control: pH 8.1) on haemocytes of Mytilus edulis, and the changes in the structure and immune function were investigated during a 21-day experiment. The results demonstrated that seawater acidification had little effect on the cellular mortality and granulocyte proportion but damaged the granulocyte ultrastructure. Phagocytosis of haemocytes was also significantly inhibited in a clearly concentration-dependent manner, demonstrating that the immune function was affected. Moreover, ROS production was significantly induced in both CO2 and HCl treatments, and four antioxidant components, GSH, GST, GR and GPx, had active responses to the acidification stress. Comparatively, CO2 had more severe destructive effects on haemocytes than HCl at the same pH level, indicating that CO2 stressed cells in other ways beyond the increasing H+ concentration. One possible explanation was that seawater acidification induced ROS overproduction, which damaged the ultrastructure of haemocytes and decreased phagocytosis.

BDE-47 exposure changed the immune function of haemocytes in Mytilus edulis: An explanation based on ROS-mediated pathway.

Brominated Tetra-BDE (BDE-47), is suggested to be widely distributed in marine environments and highly accumulated in marine organisms. Blue mussel Mytilus edulis is a sentinel organism that is commonly used for monitoring chemical contaminants in coastal ecosystems, and its haemocytes play an essential role in immune function. Therefore, we estimated the effects of BDE-47 exposure on the M. edulis haemocytes' immune function under controlled laboratory conditions. The study found the following results: (1) BDE-47 exposure increased the mortality of the haemocytes and decreased the total haemocyte counts. The ultrastructure and microstructure in the haemocytes were significantly changed, and the micronucleus frequency was increased steadily in a concentration-dependent manner, inferring that cellular and molecular damages occur during the exposure. (2) The immune function of the haemocytes was estimated from lysosomal and phagocytic changes. The lysosomal membrane stability was significantly disrupted compared to the control according to neutral red retention time changes, and the phagocytic ability was reduced significantly. Two lysosomal enzymes, acid phosphatases and alkaline phosphatases, presented similar increasing trends during the treatment. (3) BDE-47 exposure significantly induced the overproduction of reactive oxygen species and malondialdehyde in a clear time- and concentration-dependent manner, suggesting the occurrence of oxidative stress. We thus presumed that BDE-47 exposure affected the immune function of the mussel's haemocytes, and an ROS-mediated pathway might be one of the possible explanations for the observation.

Comparative studies on the effects of seawater acidification caused by CO2 and HCl enrichment on physiological changes in Mytilus edulis.

The present medium term (21 d) study was performed to evaluate the effects of HCl or CO2-induced acidified seawater (pH 7.7, 7.1 or 6.5; control: pH 8.1) on the physiological responses of the blue mussel, Mytilus edulis, at different levels of biological organization. The results demonstrate that: (1) either HCl or CO2 enrichment had significant impacts on physiological changes in M. edulis: the mortality increased while condition index (CI) decreased steadily as the pH decreased, those indexes indicate the metabolic activities (e.g. filtering rate, oxygen consumption rate, etc.) underwent similar changes; moreover, the decrease of calcification rate and carbonic anhydrase activity indicate that the carbon sink ability of the mussels was significantly affected. We hypothesize that acidification induced intracellular energy crisis and a decrease in enzyme activities could be a potential explanation for our findings. (2) Comparatively, CO2 enrichment had more severe effects on mortality but caused less stress to the metabolic and carbon sink indexes than HCl adjustment at the same pH level. Apoptosis caused by the 'intracellular acidification' in the CO2 group and difference in cytoplasmic Ca(2+) concentration between two groups are suggested to be responsible for these results. (3) An integrated biomarker response (IBR) was set up on the basis of the estimated indexes; it was determined that the IBR decreased steadily with the decrease of pH, and a positive relationship was observed between them, inferring that the IBR might be a potential biological monitoring method in evaluating the effects of seawater acidification.

The reproductive toxicity on the rotifer Brachionus plicatilis induced by BDE-47 and studies on the effective mechanism based on antioxidant defense system changes.

2,2',4,4'-Tetrabromodiphenyl ether (BDE-47), a low-brominated Tetra-BDE that is widely distributed in the marine ecosystem, was selected to investigate the reproductive toxicity on the rotifer, Brachionus plicatilis, and the possible mechanism based on antioxidant defense system changes were studied. The results showed the following: (1) A low concentration of BDE-47 had a slight effect on the egg production of individual females and the egg production rate (EPR) of the population. In fact, BDE-47 exerted reproductive inhibition effects in a time- and concentration-dependent manner. The obtained life tables indicated that BDE-47 at a high concentration prolonged the generation time, whereas low and moderate concentrations of BDE-47 had the opposite effects. BDE-47 at a medium concentration significantly decreased the life expectancy and net reproductive rate (P<0.05). Additionally, a high concentration of BDE-47 markedly decreased the net reproductive rate and intrinsic increase rate (P<0.05). The ultra-structure of the ovary showed that BDE-47 severely damaged the ovary. (2) BDE-47 stress elevated the ROS level in B. plicatilis. The GST activity was induced significantly by the low concentration of BDE-47 and inhibited by the highest concentration tested. The GPx activity and GSH content were significant decreased in all the tested groups, and GR activity was induced. GST and GSH appeared to be sensitive to oxidative stress, and all of the glutathione-related enzymes were found to play an important role in maintaining the antioxidant/pro-oxidant balance based on Pearson's correlation analysis. The results indicated that BDE-47 causes reproductive toxicity in B. plicatilis and that the ROS-mediated pathway is responsible for the observed toxicity.