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1.
Sci Total Environ ; 506-507: 201-16, 2015 Feb 15.
Artigo em Inglês | MEDLINE | ID: mdl-25460953

RESUMO

High-resolution measurements of gas and aerosols' chemical composition along with meteorological and turbulence parameters were performed over the Aegean Sea (AS) during an Etesian outbreak in the framework of the Aegean-GAME airborne campaign. This study focuses on two distinct Etesian patterns, with similarities inside the Marine Atmospheric Boundary Layer (MABL) and differences at higher levels. Under long-range transport and subsidence the pollution load is enhanced (by 17% for CO, 11% for O3, 28% for sulfate, 62% for organic mass, 47% for elemental carbon), compared to the pattern with a weaker synoptic system. Sea surface temperature (SST) was a critical parameter for the MABL structure, turbulent fluxes and pollutants' distribution at lower levels. The MABL height was below 500 m asl over the eastern AS (favoring higher accumulation), and deeper over the western AS. The most abundant components of total PM1 were sulfate (40-50%) and organics (30-45%). Higher average concentrations measured over the eastern AS (131 ± 76 ppbv for CO, 62.5 ± 4.1 ppbv for O3, 5.0 ± 1.1 µg m(-3) for sulfate, 4.7 ± 0.9 µg m(-3) for organic mass and 0.5 ± 0.2 µg m(-3) for elemental carbon). Under the weaker synoptic system, cleaner but more acidic air masses prevailed over the eastern part, while distinct aerosol layers of different signature were observed over the western part. The Aitken and accumulation modes contributed equally during the long-range transport, while the Aitken modes dominated during local or medium range transport.


Assuntos
Movimentos do Ar , Poluentes Atmosféricos/análise , Poluição do Ar/estatística & dados numéricos , Monitoramento Ambiental , Aerossóis/análise , Fenômenos Químicos , Mar Mediterrâneo , Conceitos Meteorológicos , Oceanos e Mares , Material Particulado/análise
2.
Int J Neural Syst ; 12(3-4): 187-201, 2002.
Artigo em Inglês | MEDLINE | ID: mdl-12370961

RESUMO

We present a prototype of a recently proposed two stage model of the entorhinal-hippocampal loop. Our aim is to form a general computational model of the sensory neocortex. The model--grounded on pure information theoretic principles--accounts for the most characteristic features of long-term memory (LTM), performs bottom-up novelty detection, and supports noise filtering. Noise filtering can also serve to correct the temporal ordering of information processing. Surprisingly, as we examine the temporal characteristics of the model, the emergent dynamics can be interpreted as perceptual priming, a fundamental type of implicit memory. In the model's framework, computational results support the hypothesis of a strong correlation between perceptual priming and repetition suppression and this correlation is a direct consequence of the temporal ordering in forming the LTM. We also argue that our prototype offers a relatively simple and coherent explanation of priming and its relation to a general model of information processing by the brain.


Assuntos
Córtex Entorrinal/fisiologia , Hipocampo/fisiologia , Memória/fisiologia , Modelos Neurológicos , Vias Neurais/fisiologia , Animais , Humanos , Neocórtex/fisiologia , Rede Nervosa/fisiologia , Inibição Neural/fisiologia , Estimulação Luminosa/métodos , Reconhecimento Psicológico/fisiologia , Percepção Visual/fisiologia
3.
Electrophoresis ; 22(9): 1593-602, 2001 May.
Artigo em Inglês | MEDLINE | ID: mdl-11425215

RESUMO

The solubilization of a particular protein is mandatory for its subsequent resolution and detection in two-dimensional gels. However, the extraction solutions, that are compatible with the first-dimensional separation step, such as urea and 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS), do not solubilize all proteins in a sample. We studied the effect of various common, strong detergents and chaotropes, widely used as solubilizing agents, such as sodium dodecyl sulfate, lithium dodecyl sulfate and guanidine hydrochloride, on the solubilization of the total and membrane proteins of the bacterium Haemophilus influenzae. The proteins solubilized with each system were analyzed by two-dimensional electrophoresis and these of interest were identified by matrix assisted laser desorption/ionization-mass spectrometry (MALDI-MS). Use of sodium dodecyl sulfate, lithium dodecyl sulfate or guanidine hydrochloride for the solubilization of total proteins of the microorganism resulted in the detection of several additional spots, representing mainly outer membrane proteins, in comparison with those detected in the soluble protein fraction. Solubilization of the proteins of the cell envelope fraction with sodium dodecyl sulfate did not result in a more efficient protein detection when compared to the extraction with the urea/CHAPS system. When the dry immobilized pH gradient strips were rehydrated in a solution containing the proteins of the membrane fraction solubilized with sodium dodecyl sulfate or lithium dodecyl sulfate, a larger number of protein spots were detected in comparison with strips that were rehydrated in the urea/CHAPS solution. However, no improvement was observed in comparison with protein application in sample cups. The additional proteins detected with the use of strong detergents and chaotropes are in the majority difficult to solubilize and less hydrophobic proteins.


Assuntos
Proteínas de Bactérias/análise , Detergentes , Eletroforese em Gel Bidimensional/métodos , Haemophilus influenzae , Sensibilidade e Especificidade
4.
Antimicrob Agents Chemother ; 45(4): 1058-64, 2001 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-11257016

RESUMO

New inhibitors of peptide deformylase (PDF) which are very potent against the isolated enzyme and show a certain degree of antibacterial activity have recently been synthesized by our group. Several lines of experimental evidence indicate that these inhibitors indeed interfere with the target enzyme in the bacterial cell. (i) The inhibition of Escherichia coli growth could be counteracted by overexpression of PDF from different organisms, including E. coli, Streptococcus pneumoniae, and Haemophilus influenzae. Conversely, reduced expression of PDF in S. pneumoniae resulted in an increased susceptibility to the inhibitors. (ii) Proteome analysis on two-dimensional gels revealed a shift for many proteins towards lower pI in the presence of PDF inhibitors, as would be expected if the proteins still carry their N-formyl-Met terminus. (iii) PDF inhibitors show no antimicrobial activity against E. coli under conditions that make growth independent of formylation and deformylation. The antibacterial activity in E. coli was characterized as bacteriostatic. Furthermore, the development of resistance in E. coli was observed to occur with high frequency (10(-7)). Resistant mutants show a reduced growth rate, and DNA sequence analysis revealed mutations in their formyl transferase gene. Taking all these aspects into account, we conclude that PDF may not be an optimal target for broad-spectrum antibacterial agents.


Assuntos
Amidoidrolases , Aminopeptidases/antagonistas & inibidores , Antibacterianos/farmacologia , Resistência Microbiana a Medicamentos , Inibidores Enzimáticos/farmacologia , Escherichia coli/efeitos dos fármacos , Testes de Sensibilidade Microbiana/métodos , Aminopeptidases/genética , Aminopeptidases/metabolismo , Anti-Infecciosos Urinários/farmacologia , Proteínas de Bactérias/efeitos dos fármacos , Proteínas de Bactérias/metabolismo , Antagonismo de Drogas , Escherichia coli/enzimologia , Escherichia coli/genética , Genes Bacterianos , Haemophilus influenzae/efeitos dos fármacos , Haemophilus influenzae/metabolismo , Mutagênese Insercional , Mutação , Streptococcus pneumoniae/efeitos dos fármacos , Streptococcus pneumoniae/genética , Streptococcus pneumoniae/metabolismo , Transformação Bacteriana , Trimetoprima/farmacologia
5.
J Mol Biol ; 305(2): 279-89, 2001 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-11124906

RESUMO

N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU) is an essential bacterial enzyme with both an acetyltransferase and a uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways. GlmU is therefore an attractive target for potential antibiotics. Knowledge of its three-dimensional structure would provide a basis for rational drug design. We have determined the crystal structures of Streptococcus pneumoniae GlmU (SpGlmU) in apo form at 2.33 A resolution, and in complex with UDP-N-acetyl glucosamine and the essential co-factor Mg(2+) at 1.96 A resolution. The protein structure consists of an N-terminal domain with an alpha/beta-fold, containing the uridyltransferase active site, and a C-terminal domain with a long left-handed beta-sheet helix (LbetaH) domain. An insertion loop containing the highly conserved sequence motif Asn-Tyr-Asp-Gly protrudes from the left-handed beta-sheet helix domain. In the crystal, S. pneumoniae GlmU forms exact trimers, mainly through contacts between left-handed beta-sheet helix domains. UDP-N-acetylglucosamine and Mg(2+) are bound at the uridyltransferase active site, which is in a closed form. We propose a uridyltransferase mechanism in which the activation energy of the double negatively charged phosphorane transition state is lowered by charge compensation of Mg(2+) and the side-chain of Lys22.


Assuntos
Magnésio/metabolismo , Nucleotidiltransferases/química , Nucleotidiltransferases/metabolismo , Streptococcus pneumoniae/enzimologia , Uridina Difosfato N-Acetilglicosamina/metabolismo , Motivos de Aminoácidos , Sequência de Aminoácidos , Apoenzimas/química , Apoenzimas/metabolismo , Sítios de Ligação , Sequência Conservada , Cristalografia por Raios X , Escherichia coli/enzimologia , Ligação de Hidrogênio , Modelos Moleculares , Nucleotidiltransferases/genética , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Deleção de Sequência , Relação Estrutura-Atividade
6.
Electrophoresis ; 21(2): 411-29, 2000 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-10675023

RESUMO

We have constructed a two-dimensional database of the proteome of Haemophilus influenzae, a bacterium of medical interest of which the complete genome, comprising about 1742 open reading frames, has been sequenced. The soluble protein fraction of the microorganism was analyzed by two-dimensional electrophoresis, using immobilized pH gradient strips of various pH regions, gels with different acrylamide concentrations and buffers with different trailing ions. In order to visualize low-copy-number gene products, we employed a series of protein extraction and sample application approaches and several chromatographic steps, including heparin chromatography, chromatofocusing and hydrophobic interaction chromatography. We have also analyzed the cell envelope-bound protein fraction using either immobilized pH gradient strips or a two-detergent system with a cationic detergent in the first and an anionic detergent in the second-dimensional separation. Different proteins (502) were identified by matrix-assisted laser desorption/ionization mass spectrometry and amino acid composition analysis. This is at present one of the largest two-dimensional proteome databases.


Assuntos
Bases de Dados Factuais , Haemophilus influenzae , Proteoma/análise , Eletroforese em Gel Bidimensional/métodos
7.
Structure ; 7(10): 1167-80, 1999 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-10545329

RESUMO

BACKGROUND: Lytic transglycosylases are bacterial muramidases that catalyse the cleavage of the beta- 1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan with concomitant formation of a 1,6-anhydrobond in the MurNAc residue. These muramidases play an important role in the metabolism of the bacterial cell wall and might therefore be potential targets for the rational design of antibacterial drugs. One of the lytic transglycosylases is Slt35, a naturally occurring soluble fragment of the outer membrane bound lytic transglycosylase B (MltB) from Escherichia coli. RESULTS: The crystal structure of Slt35 has been determined at 1.7 A resolution. The structure reveals an ellipsoid molecule with three domains called the alpha, beta and core domains. The core domain is sandwiched between the alpha and beta domains. Its fold resembles that of lysozyme, but it contains a single metal ion binding site in a helix-loop-helix module that is surprisingly similar to the eukaryotic EF-hand calcium-binding fold. Interestingly, the Slt35 EF-hand loop consists of 15 residues instead of the usual 12 residues. The only other prokaryotic proteins with an EF-hand motif identified so far are the D-galactose-binding proteins. Residues from the alpha and core domains form a deep groove where the substrate fragment GlcNAc can be bound. CONCLUSIONS: The three-domain structure of Slt35 is completely different from the Slt70 structure, the only other lytic transglycosylase of known structure. Nevertheless, the core domain of Slt35 closely resembles the fold of the catalytic domain of Slt70, despite the absence of any obvious sequence similarity. Residue Glu162 of Slt35 is in an equivalent position to Glu478, the catalytic acid/base of Slt70. GlcNAc binds close to Glu162 in the deep groove. Moreover, mutation of Glu162 into a glutamine residue yielded a completely inactive enzyme. These observations indicate the location of the active site and strongly support a catalytic role for Glu162.


Assuntos
Proteínas de Escherichia coli , Escherichia coli/enzimologia , Glicosídeo Hidrolases , Glicosiltransferases/química , Motivos de Aminoácidos , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Sítios de Ligação , Cálcio/metabolismo , Domínio Catalítico , Cristalografia por Raios X , Escherichia coli/genética , Glicosiltransferases/genética , Glicosiltransferases/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Muramidase/química , Peptidoglicano/metabolismo , Conformação Proteica , Estrutura Secundária de Proteína , Homologia de Sequência de Aminoácidos
8.
Electrophoresis ; 20(11): 2181-95, 1999 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-10493123

RESUMO

Visualization of low-copy-number gene products is essential for the detection of novel drug targets by differential protein expression studies. We investigated the enrichment of low-abundance proteins of Escherichia coli by hydroxyapatite chromatography. The proteins of the various pools collected from a ceramic hydroxyapatite column were analyzed by two-dimensional electrophoresis and identified by matrix-assisted laser desorption ionization mass spectrometry. Approximately 800 spots corresponding to 296 different proteins were identified in the hydroxyapatite eluate. About 130 proteins that had not been detected in the two-dimensional gels of the total extract were identified. Hydroxyapatite chromatography enriched low-abundance but also major components of the E. coli protein extract. In particular, it enriched many low-molecular-mass proteins, such as cold-shock proteins. The proteins bound to the hydroxyapatite matrix belong to several classes, including enzymes with various catalytic activities, heat- and cold-shock proteins and many hypothetical and novel proteins with yet unknown functions. The results include a list of the proteins enriched by hydroxyapatite chromatography and a two-dimensional map of the enriched proteins. They may be useful in the design of protein purification pathways using master purification steps and in the search for novel drug targets.


Assuntos
Proteínas de Bactérias/isolamento & purificação , Cromatografia , Escherichia coli/química , Cromatografia/métodos , Durapatita , Eletroforese em Gel Bidimensional/métodos , Peso Molecular
9.
J Chromatogr A ; 833(2): 157-68, 1999 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-10081829

RESUMO

Enrichment of proteins in solution is the goal of a purification process and often a scientific challenge. We investigated the capacity of hydrophobic interaction chromatography to enrich proteins, potential candidates for novel drug targets. The soluble protein fraction of Haemophilus influenzae was fractionated over a TSK Phenyl column and the proteins resolved were analyzed by two-dimensional gel electrophoresis and matrix-assisted laser desorption ionization mass spectrometry. Approximately 150 proteins, bound to the column, were identified, 30 for the first time. Most of the proteins enriched by hydrophobic interaction chromatography were represented by major spots, so that an enrichment of low-copy-number gene products was only partially achieved. The proteins enriched by this chromatographic approach belong to various protein classes, including enzymes, ribosomal proteins and proteins with as yet unknown functions. The results include two-dimensional maps and a list of the proteins enriched by hydrophobic interaction chromatography.


Assuntos
Proteínas de Bactérias/química , Cromatografia Líquida/métodos , Proteínas de Bactérias/isolamento & purificação , Eletroforese em Gel Bidimensional , Haemophilus influenzae/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
10.
J Bacteriol ; 181(2): 483-92, 1999 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-9882662

RESUMO

The prenyltransferase undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase; EC 2.5.1.31) was purified from the soluble fraction of Escherichia coli by TSK-DEAE, ceramic hydroxyapatite, TSK-ether, Superdex 200, and heparin-Actigel chromatography. The protein was labeled with the photolabile analogue of the farnesyl pyrophosphate analogue (E, E)-[1-3H]-(2-diazo-3-trifluoropropionyloxy)geranyl diphosphate and was detected on a sodium dodecyl sulfate-polyacrylamide gel as a protein with an apparent molecular mass of 29 kDa. This protein band was cut out from the gel, trypsin digested, and subjected to matrix-assisted laser desorption ionization mass spectrometric analysis. Comparison of the experimental data with computer-simulated trypsin digest data for all E. coli proteins yielded a single match with a protein of unassigned function (SWISS-PROT Q47675; YAES_ECOLI). Sequences with strong similarity indicative of homology to this protein were identified in 25 bacterial species, in Saccharomyces cerevisiae, and in Caenorhabditis elegans. The homologous genes (uppS) were cloned from E. coli, Haemophilus influenzae, and Streptococcus pneumoniae, expressed in E. coli as amino-terminal His-tagged fusion proteins, and purified over a Ni2+ affinity column. An untagged version of the E. coli uppS gene was also cloned and expressed, and the protein purified in two chromatographic steps. We were able to detect Upp synthetase activity for all purified enzymes. Further, biochemical characterization revealed no differences between the recombinant untagged E. coli Upp synthetase and the three His-tagged fusion proteins. All enzymes were absolutely Triton X-100 and MgCl2 dependent. With the use of a regulatable gene disruption system, we demonstrated that uppS is essential for growth in S. pneumoniae R6.


Assuntos
Alquil e Aril Transferases/genética , Alquil e Aril Transferases/metabolismo , Escherichia coli/enzimologia , Escherichia coli/genética , Alquil e Aril Transferases/química , Sequência de Aminoácidos , Animais , Bactérias/enzimologia , Caenorhabditis elegans/enzimologia , Cromatografia de Afinidade , Cromatografia em Gel , Cromatografia por Troca Iônica , Mapeamento Cromossômico , Cromossomos Bacterianos , Clonagem Molecular , Cinética , Dados de Sequência Molecular , Peso Molecular , Mutagênese , Proteínas Recombinantes/química , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/enzimologia , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos
11.
Protein Expr Purif ; 14(1): 113-9, 1998 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-9758758

RESUMO

The design of efficient protein purification protocols is a scientific challenge and can be facilitated by the use of master protein enrichment or purification steps. A master purification step is in principle a list including the major proteins expected to be present in the various fractions collected from a particular enrichment process. Consideration of a master step in the design of a purification pathway can reduce the time and effort usually invested in "trial and error" approaches. Moreover, master purification steps will certainly become valuable tools in the isolation of proteins today designated as hypothetical or predicted coding regions, resulting from the sequencing of the various genomes, and for which no information on their purification exists. The construction of such a master step consists of performance of the protein separation by the particular chromatographic method, analysis by two-dimensional polyacrylamide gel electrophoresis, and identification by mass spectrometry of the proteins present in each fraction. This can be efficiently accomplished now thanks to developments in two-dimensional gel technology and large-scale sample throughput mass spectrometry. Here we present an example of construction of a master protein enrichment step using the soluble protein fraction of the bacterium Haemophilus influenzae and applying Heparin chromatography.


Assuntos
Proteínas de Bactérias/isolamento & purificação , Cromatografia em Agarose/métodos , Haemophilus influenzae/química , Precipitação Química , Eletroforese em Gel Bidimensional , Géis , Heparina , Sefarose/análogos & derivados , Solubilidade , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
12.
Clin Diagn Lab Immunol ; 5(5): 721-4, 1998 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-9729542

RESUMO

To examine the role of the Plasmodium falciparum Exp-1 blood-stage protein in producing antibodies that cross-react with human T-cell lymphotropic virus type I (HTLV-I) proteins, we studied sera from Indonesian volunteers who seroconverted to malaria after transmigrating to an area where malaria is hyperendemic. Samples from Philippine volunteers, that were used in a prior study that examined malaria antibodies that cross-react with HTLV-I proteins, were also used. Eighty-three percent of the Indonesian transmigrants developed antibodies against the malaria Exp-1 protein by 6 months postmigration. Of these malaria seroconverters, 27% developed false-positive HTLV-I enzyme immunoassay (EIA) immunoreactivity, as indicated by indeterminate HTLV-I Western blot banding patterns. Five of the six Philippine samples tested were HTLV-I EIA false positive and Western blot indeterminate. When a recombinant Exp-1 protein was used in blocking experiments, the HTLV-I Western blot immunoreactivity of sera from both groups was either completely eliminated or greatly reduced. No effect on the Western blot immunoreactivity of truly HTLV-I-positive sera was seen. To determine if immunization with the recombinant Exp-1 protein could elicit the production of HTLV-I antibodies, six mice were inoculated with the recombinant protein. Following administration of three 50-microgram doses of the protein, four of the six mice developed antibodies that cross-reacted with HTLV-I proteins on Western blot. These results indicate that the immune response against the malaria Exp-1 protein may result in HTLV-I-cross-reacting antibodies that can lead to false-positive EIA and indeterminant Western blotting results.


Assuntos
Anticorpos Antiprotozoários/imunologia , Antígenos de Protozoários/imunologia , Reações Cruzadas/imunologia , Antígenos HTLV-I/imunologia , Plasmodium falciparum/imunologia , Proteínas de Protozoários/imunologia , Proteínas Virais/imunologia , Animais , Anticorpos Antiprotozoários/sangue , Anticorpos Antivirais/sangue , Anticorpos Antivirais/imunologia , Western Blotting , Anticorpos Anti-HTLV-I/sangue , Humanos , Técnicas Imunoenzimáticas , Indonésia , Camundongos , Proteínas Recombinantes/genética , Proteínas Recombinantes/imunologia
13.
Farmaco ; 53(4): 266-72, 1998 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-9658584

RESUMO

Csk is a cellular protein tyrosine kinase (PTK) that has been shown to specifically regulate the activity of Src kinase family members by phosphorylation of a carboxy-terminal tyrosine residue. The molecular mechanisms controlling Csk regulation and its substrate specificity have not been elucidated. Here we report a novel type of overlay kinase assay that allows to probe for Csk-mediated phosphorylation of cellular substrates separated by polyacrylamide gel electrophoresis and transferred to nitrocellulose filters. Most of the cell lines analyzed with this method revealed only a few potential Csk substrates. However, an increased number of Csk substrates was detected in NIH3T3 cells expressing a constitutively activated form of the Src kinase Lck or in PC12 and NIH3T3 cells that had been treated with pervanadate. These cells all display an increased level of cellular protein tyrosine phosphorylation which led to the conclusion that Csk preferentially phosphorylates tyrosine-phosphorylated proteins. To verify this hypothesis we analyzed Csk-mediated phosphorylation of recombinant Lck, a known Csk substrate. Results demonstrated that autophosphorylation of Lck (at Tyr394) facilitates Csk-mediated phosphorylation of Lck at its regulatory site (Tyr505). Subsequent peptide binding studies revealed that Csk can bind to a peptide corresponding to the Lck-autophosphorylation site only when it is phosphorylated. These findings suggest that autophosphorylation of Lck at Tyr394 triggers an interaction with Csk and thereby facilitates subsequent phosphorylation and inactivation of Lck. The phosphorylation of other cellular Csk substrates may be regulated by a similar mechanism.


Assuntos
Proteína Tirosina Quinase p56(lck) Linfócito-Específica/metabolismo , Proteínas Tirosina Quinases/fisiologia , Tirosina/metabolismo , Células 3T3 , Animais , Proteína Tirosina Quinase CSK , Camundongos , Fosforilação , Domínios de Homologia de src , Quinases da Família src
14.
J Chromatogr A ; 806(2): 279-91, 1998 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-9646484

RESUMO

Haemophilus influenzae is a bacterium of pharmaceutical interest of which the entire genome has been sequenced. Identification of low-abundance proteins in a two-dimensional map is important for the detection of new drug targets. We applied chromatography on Polybuffer Exchanger (chromatofocusing) in order to fractionate and enrich H. influenzae proteins, possibly low-copy-number gene products, from larger volumes. Two proteins, major ferric iron-binding protein (HI0097) and 5'-nucleotidase (HI0206) were obtained in pure form and hypothetical protein HI0052 was purified to near homogeneity by this single purification step. Four other proteins, aspartate ammonia lyase (HI0534), peptidase D (HI0675), elongation factor Ts (HI0914) and 5-methyltetrahydropteroyltriglutamate methyltransferase (HI1702), were strongly enriched so that chromatography on Polybuffer Exchanger can be used as an initial step for their isolation. Approximately 125 proteins were identified in the fractions collected from the column. Seventy of these were for the first time identified after chromatography on Polybuffer Exchanger. The proteins enriched by the chromatofocusing step include both low-abundance as well as high-copy-number gene products. They do not belong to a single protein class and the majority of them are enzymes with various functions. The results include a list and a two-dimensional map of the proteins enriched by chromatofocusing. They may be useful in the search of drug targets and in the design of purification protocols for the isolation of homologous proteins from related microorganisms.


Assuntos
Proteínas de Bactérias/isolamento & purificação , Haemophilus influenzae/química , Eletroforese em Gel de Poliacrilamida , Focalização Isoelétrica , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
15.
Electrophoresis ; 19(5): 761-6, 1998 May.
Artigo em Inglês | MEDLINE | ID: mdl-9629912

RESUMO

Haemophilus influenzae is a bacterium of medical interest of which the entire genome has been sequenced. The proteome of the microorganism has been analyzed by two-dimensional gel electrophoresis, during which immobilized pH 3-10 gradient strips were used and approximately 300 proteins were identified. In order to detect additional, basic proteins, we analyzed the soluble protein fraction of H. influenzae and the proteins of fractions collected from affinity chromatography on heparin, by two-dimensional gel electrophoresis, using for the first-dimensional separation immobilized pH gradient strips comprising the pH region of 6-11. The protein spots were analyzed by matrix-assisted laser desorption ionization-mass spectrometry. One hundred and two proteins were identified, of which 58 were identified for the first time. A large percentage of the basic proteins represent nucleic acid binding and, in particular, ribosomal proteins. The locations of the identified basic proteins of H. influenzae are indicated in a two-dimensional map.


Assuntos
Proteínas de Bactérias/análise , Eletroforese em Gel Bidimensional , Haemophilus influenzae/química , Mapeamento de Peptídeos , Concentração de Íons de Hidrogênio
16.
Electrophoresis ; 18(7): 1184-92, 1997 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-9237577

RESUMO

High-resolution two-dimensional (2-D) polyacrylamide gel electrophoresis allows the separation of complex biological mixtures (i.e., several hundred proteins from a bacterial cell lysate) in a single experiment. In this report proteins from Haemophilus influenzae were separated by 2-D gels and analyzed by peptide mass fingerprinting and/or amino acid analysis. By comparing the peptide mass profiles and the amino acid composition with the Haemophilus influenzae database, 119 protein spots were identified. The combination of amino acid analysis and peptide mass fingerprinting is a powerful tool for a rapid and economical identification of a large number of proteins resolved by 2-D gels. Studies on gene regulation and changes of protein expression upon drug treatment require quick and serial analysis techniques to efficiently identify potential new drug targets.


Assuntos
Proteínas de Bactérias/análise , Eletroforese em Gel Bidimensional/métodos , Haemophilus influenzae/química , Aminoácidos , Genoma Bacteriano , Ponto Isoelétrico , Espectrometria de Massas/métodos , Mapeamento de Peptídeos
17.
Electrophoresis ; 18(7): 1193-202, 1997 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-9237578

RESUMO

Two-dimensional gel electrophoresis separates several hundred protein molecules in one single experiment and is efficiently used to study the products expressed by different genomes. Low-copy-number gene products are invisible on a stained two-dimensional map and must be enriched such that sufficient amounts are present for visualization and identification. We investigated the enrichment of proteins of the bacterium Haemophilus influenzae by chromatography on immobilized heparin which has affinity for growth and protein biosynthesis factors. Total soluble proteins of the microorganism were fractionated on Heparin-Actigel which resulted in enrichment of approximately 160 proteins. The eluates, representing about 40% of the applied proteins, were analyzed by two-dimensional gel electrophoresis and the protein spots were characterized by amino acid composition analysis and matrix-assisted laser desorption ionization mass spectrometry. The proteins enriched by chromatography on the heparin gel were not exclusively low-copy-number gene products and they did not exclusively belong to one single class of proteins. The proteins that bound to the heparin gel are indicated in a two-dimensional protein map which includes more than 110 newly identified proteins.


Assuntos
Proteínas de Bactérias/análise , Cromatografia , Eletroforese em Gel Bidimensional , Haemophilus influenzae/química , Mapeamento de Peptídeos , Géis , Heparina , Sefarose/análogos & derivados
18.
Parasite Immunol ; 17(12): 631-42, 1995 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-8834763

RESUMO

Mice and rabbits immunized with recombinant forms of malaria vaccine candidate antigens rhoptry-associated proteins 1 and 2 (RAP-1, RAP-2 and rRAP-1, rRAP-2) produce antibodies at titres equivalent to monoclonal antibody ascites fluid raised against the native proteins. Sera from animals immunized with rRAP-1 contain antibodies which recognize the native protein by indirect immunofluorescence and immunoblotting, partially inhibit erythrocyte invasion in vitro and are long lasting. Epitope mapping shows these antibodies predominantly recognize epitopes in the N-terminal third of rRAP-1, some of which coincide with the targets of inhibitory monoclonal antibodies. By contrast, sera from animals immunized with rRAP-2 contain antibodies which recognize the recombinant but not the native protein.


Assuntos
Antígenos de Protozoários/imunologia , Mapeamento de Epitopos , Vacinas Antimaláricas/imunologia , Plasmodium falciparum/imunologia , Proteínas de Protozoários/imunologia , Sequência de Aminoácidos , Animais , Modelos Animais de Doenças , Ensaio de Imunoadsorção Enzimática , Eritrócitos/citologia , Eritrócitos/imunologia , Feminino , Immunoblotting , Imunogenética , Imunoglobulina G/sangue , Imunoglobulina G/imunologia , Camundongos , Dados de Sequência Molecular , Coelhos , Proteínas Recombinantes de Fusão/imunologia
19.
Proc Natl Acad Sci U S A ; 92(4): 1048-52, 1995 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-7862631

RESUMO

An Escherichia coli expression system overproducing the bacterial chaperones GroES and GroEL was engineered and has been successfully used to produce large quantities of the recombinant human protein-tyrosine kinase p50csk. The co-overproduction of the two chaperones with p50csk results in increased solubility of the kinase and allows purification of milligram amounts of active enzyme. Analysis of the purified protein by SDS/polyacrylamide gel electrophoresis reveals a single band with an apparent molecular mass of 50 kDa, indicating that recombinant human p50csk has been purified to near homogeneity. The purified enzyme displays tyrosine kinase activity as measured by both autophosphorylation and phosphorylation of exogenous substrates. Biochemical properties, including in vitro substrate specificity and enzymatic characteristics of the enzyme, have been assessed and compared with those of members of the Src family of protein-tyrosine kinases. Results indicate that p50csk and p56lck have different substrate specificities and that p50csk and p60c-src have similar kinetic parameters. The successful production and purification of an enzymatically active form of p50csk will enable further characterization of this important kinase and allow clarification of its physiological role. In addition, the results suggest that the approach described may be generally applicable to improve the solubility of recombinant proteins which otherwise are produced in an insoluble form in E. coli.


Assuntos
Chaperonina 10/biossíntese , Chaperonina 60/biossíntese , Escherichia coli/genética , Proteínas Tirosina Quinases/isolamento & purificação , Quinases da Família src , Sequência de Bases , Proteína Tirosina Quinase CSK , Clonagem Molecular , Primers do DNA , Humanos , Dados de Sequência Molecular , Proteínas Tirosina Quinases/genética , Proteínas Tirosina Quinases/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Especificidade por Substrato
20.
J Biol Chem ; 270(8): 3667-76, 1995 Feb 24.
Artigo em Inglês | MEDLINE | ID: mdl-7533154

RESUMO

In this report we describe a novel gene delivery system using malaria circumsporozoite (CS) protein as a specific ligand. The CS protein covers the entire surface of sporozoites of malaria parasites. Previous studies have demonstrated that intravenously injected CS protein binds specifically to the basolateral surface of hepatocytes within minutes, indicating the high hepatocyte specificity of CS protein. This characteristic of CS protein prompted us to explore the possibility of using this protein as a liver-specific ligand for hepatic gene delivery vehicle. As an initial step, we investigated the efficacy of CS protein-mediated gene transfer into primary hepatocytes as well as established cell lines. Recombinant CS proteins were chemically conjugated to poly(L-lysine). The CS conjugates were complexed with recombinant plasmid DNA carrying a reporter gene. When the DNA complex was used to transfect primary hepatocytes, a very low level of expression of the reporter gene was observed. The level of expression was greatly enhanced when the cells were cotransfected with adenovirus, which presumably releases the internalized DNA from endosomal entrapment. The CS-mediated gene transfer into the cells required region II+, an evolutionarily conserved amino acid sequence conferring the binding of CS protein to its receptor. CS protein also efficiently mediated gene transfer into a number of cell lines, i.e. HepG2, HeLa, NIH3T3, and K562, but not HL-60, which contains low levels of receptor. Thus, the CS conjugate can be used to deliver DNA into many different cultured cells. Most importantly, the CS conjugate has a potential to be further developed into a liver-specific gene delivery vehicle in vivo.


Assuntos
Técnicas de Transferência de Genes , Fígado/metabolismo , Plasmodium/genética , Proteínas de Protozoários/genética , Sequência de Aminoácidos , Animais , Evolução Biológica , Linhagem Celular , Sequência Conservada , Epitopos/genética , Humanos , Fígado/citologia , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Dados de Sequência Molecular , Polilisina/metabolismo , Receptores de Superfície Celular/metabolismo , Células Tumorais Cultivadas
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