Mimicking of a Transient Protein Binding in Mammalian Cells Using a Functionalized Magnetic Nanoparticle.

Identification of binding proteins is essential for uncovering biological mechanisms of functional small molecules and proteins, but if the binding is transient it may be quite difficult to find the binding proteins using cell extracts that is commonly used for target identification methods. Usually sticky proteins bind to bait molecule first as long as cell extracts are used. In such cases, it would be very difficult to find transient binding proteins. The best way to circumvent the non-specific bindings might be putting bait molecules into living cells and collects the baits after a certain period of incubation time. In here, we evaluated a new target identification method in living cells with magnetic nanoparticles. For the proof-of-concept, we reproduced a transient interaction between peroxisomal proteins and Pex5p, the peroxisome guiding protein. To that end, carboxyl group-functionalized magnetic nanoparticles were labeled with peroxisomal targeting signal 1 (PTS1) peptide to mimic peroxisomal proteins. The PTS1-labeled magnetic nanoparticles translocated into peroxisomes in the mammalian cells, during which they transiently interacted with Pex5p. These results were confirmed using a fluorescence microscope and "in cell pull-down" experiments. Conclusively, the transient interaction between peroxisomal proteins and Pex5p in cells was reproduced with the PTS1-labeled magnetic nanoparticles in living cells by showing its sequential translocation into peroxisomes and transient interaction with Pex5p in parallel. This result indicates that a magnetic nanoparticle can be a useful tool for analyzing dynamic change of interacting proteins to a functional molecule in living cells depending on circumstances the cells encounter.

Contrasting Magnetic Behaviors in Rhodium- and Ruthenium-Doped Cubic Perovskite SrFeO3 : Nearly Ferromagnetic Metal versus Spin-Glass Insulator.

The effects of Rh and Ru doping for SrFeO3 , a helimagnetic metal with a cubic perovskite structure, are studied by magnetic and resistivity measurements. Although SrRhO3 is a paramagnetic metal and SrRuO3 is a ferromagnetic one, the Rh doping induces a nearly ferromagnetic metallic state, whereas the Ru doping induces a spin-glass insulating state. Mössbauer measurements evidence a marked difference between SrFe0.8 Rh0.2 O3 and SrFe0.8 Ru0.2 O3 in the formal valences of Fe, which are estimated to be 4+ and 3.75+, respectively. The contrasting magnetic behaviors of Rh- and Ru-doped SrFeO3 are discussed in terms of the subtle balance between the double-exchange ferromagnetism and the superexchange antiferromagnetism.

Abiotic Deposition of Fe Complexes onto Leptothrix Sheaths.

Bacteria classified in species of the genus Leptothrix produce extracellular, microtubular, Fe-encrusted sheaths. The encrustation has been previously linked to bacterial Fe oxidases, which oxidize Fe(II) to Fe(III) and/or active groups of bacterial exopolymers within sheaths to attract and bind aqueous-phase inorganics. When L. cholodnii SP-6 cells were cultured in media amended with high Fe(II) concentrations, Fe(III) precipitates visibly formed immediately after addition of Fe(II) to the medium, suggesting prompt abiotic oxidation of Fe(II) to Fe(III). Intriguingly, these precipitates were deposited onto the sheath surface of bacterial cells as the population was actively growing. When Fe(III) was added to the medium, similar precipitates formed in the medium first and were abiotically deposited onto the sheath surfaces. The precipitates in the Fe(II) medium were composed of assemblies of globular, amorphous particles (ca. 50 nm diameter), while those in the Fe(III) medium were composed of large, aggregated particles (≥3 µm diameter) with a similar amorphous structure. These precipitates also adhered to cell-free sheaths. We thus concluded that direct abiotic deposition of Fe complexes onto the sheath surface occurs independently of cellular activity in liquid media containing Fe salts, although it remains unclear how this deposition is associated with the previously proposed mechanisms (oxidation enzyme- and/or active group of organic components-involved) of Fe encrustation of the Leptothrix sheaths.

Preparation of a cross-linked porous protein crystal containing Ru carbonyl complexes as a CO-releasing extracellular scaffold.

Protein crystals generally are stable solid protein assemblies. Certain protein crystals are suitable for use as nanovessels for immobilizing metal complexes. Here we report the preparation of ruthenium carbonyl-incorporated cross-linked hen egg white lysozyme crystals (Ru·CL-HEWL). Ru·CL-HEWL retains a Ru carbonyl moiety that can release CO, although a composite of Ru carbonyl-HEWL dissolved in buffer solution (Ru·HEWL) does not release CO. We found that treatment of cells with Ru·CL-HEWL significantly increased nuclear factor kappa B (NF-κB) activity as a cellular response to CO. These results demonstrate that Ru·CL-HEWL has potential for use as an artificial extracellular scaffold suitable for transport and release of a gas molecule.

Direct phase-sensitive identification of a d-form factor density wave in underdoped cuprates.

The identity of the fundamental broken symmetry (if any) in the underdoped cuprates is unresolved. However, evidence has been accumulating that this state may be an unconventional density wave. Here we carry out site-specific measurements within each CuO2 unit cell, segregating the results into three separate electronic structure images containing only the Cu sites [Cu(r)] and only the x/y axis O sites [Ox(r) and O(y)(r)]. Phase-resolved Fourier analysis reveals directly that the modulations in the O(x)(r) and O(y)(r) sublattice images consistently exhibit a relative phase of π. We confirm this discovery on two highly distinct cuprate compounds, ruling out tunnel matrix-element and materials-specific systematics. These observations demonstrate by direct sublattice phase-resolved visualization that the density wave found in underdoped cuprates consists of modulations of the intraunit-cell states that exhibit a predominantly d-symmetry form factor.

Stability of α''-Fe16N2 in hydrogenous atmospheres.

We revealed the inherent instability of α''-Fe16N2 in hydrogenous atmospheres due to the denitrification toward α-Fe by forming NH3 at the particle surface. Coating the particle surface with SiO2 to suppress the formation of NH3 has proven to be a simple yet powerful method to enhance the stability of α''-Fe16N2 in hydrogenous atmospheres.

CaH2-assisted low temperature synthesis of metallic magnetic nanoparticle-loaded multiwalled carbon nanotubes.

We studied synthesis of Ni or Fe nanoparticle-loaded multiwalled carbon nanotubes (MWCNTs) by pyrolyzing metal organic salts with CaH2, a very strong reductant. The use of CaH2 lowered the formation temperature of MWCNTs down to 400 °C without the use of toxic halogen-containing precursors and assistance of plasma.

Bacterial nanometric amorphous Fe-based oxide: a potential lithium-ion battery anode material.

Amorphous Fe(3+)-based oxide nanoparticles produced by Leptothrix ochracea, aquatic bacteria living worldwide, show a potential as an Fe(3+)/Fe(0) conversion anode material for lithium-ion batteries. The presence of minor components, Si and P, in the original nanoparticles leads to a specific electrode architecture with Fe-based electrochemical centers embedded in a Si, P-based amorphous matrix.

Control of bond-strain-induced electronic phase transitions in iron perovskites.

Unusual electronic phase transitions in the A-site ordered perovskites LnCu3Fe4O12 (Ln: trivalent lanthanide ion) are investigated. All LnCu3Fe4O12 compounds are in identical valence states of Ln(3+)Cu(2+)3Fe(3.75+)4O12 at high temperature. LnCu3Fe4O12 with larger Ln ions (Ln = La, Pr, Nd, Sm, Eu, Gd, Tb) show an intersite charge transfer transition (3Cu(2+) + 4Fe(3.75+) → 3Cu(3+) + 4Fe(3+)) in which the transition temperature decreases from 360 to 240 K with decreasing Ln ion size. In contrast, LnCu3Fe4O12 with smaller Ln ions (Ln = Dy, Ho, Er, Tm Yb, Lu) transform into a charge-disproportionated (8Fe(3.75+) → 5Fe(3+) + 3Fe(5+)) and charge-ordered phase below ∼250-260 K. The former series exhibits metal-to-insulator, antiferromagnetic, and isostructural volume expansion transitions simultaneously with intersite charge transfer. The latter shows metal-to-semiconductor, ferrimagnetic, and structural phase transitions simultaneously with charge disproportionation. Bond valence calculation reveals that the metal-oxygen bond strains in these compounds are classified into two types: overbonding or compression stress (underbonding or tensile stress) in the Ln-O (Fe-O) bond is dominant in the former series, while the opposite stresses or bond strains are found in the latter. Intersite charge transfer transition temperatures are strongly dependent upon the global instability indices that represent the structural instability calculated from the bond valence sum, whereas the charge disproportionation occurs at almost identical temperatures, regardless of the magnitude of structural instability. These findings provide a new aspect of the structure-property relationship in transition metal oxides and enable precise control of electronic states by bond strains.

Quantitative understanding of thermal stability of α''-Fe16N2.

The thermal stability of α''-Fe16N2, which attracts much interest because of its superior magnetic properties featuring a large magnetocrystalline anisotropy (Ku ~ 1 × 10(7) erg cm(-3)) and a large saturation magnetization (Ms ~ 234 emu g(-1)), though unfortunately thermally unstable, has been quantitatively studied.

Suppression of intersite charge transfer in charge-disproportionated perovskite YCu3Fe4O12.

A novel iron perovskite YCu3Fe4O12 was synthesized under high pressure and high temperature of 15 GPa and 1273 K. Synchrotron X-ray and electron diffraction measurements have demonstrated that this compound crystallizes in the cubic AA'3B4O12-type perovskite structure (space group Im3, No. 204) with a lattice constant of a = 7.30764(10) Šat room temperature. YCu3Fe4O12 exhibits a charge disproportionation of 8Fe(3.75+) → 3Fe(5+) + 5Fe(3+), a ferrimagnetic ordering, and a metal-semiconductor-like transition simultaneously at 250 K, unlike the known isoelectronic compound LaCu3Fe4O12 that currently shows an intersite charge transfer of 3Cu(2+) + 4Fe(3.75+) → 3Cu(3+) + 4Fe(3+), an antiferromagnetic ordering, and a metal-insulator transition at 393 K. This finding suggests that intersite charge transfer is not the only way of relieving the instability of the Fe(3.75+) state in the A(3+)Cu(2+)3Fe(3.75+)4O12 perovskites. Crystal structure analysis reveals that bond strain, rather than the charge account of the A-site alone, which is enhanced by large A(3+) ions, play an important role in determining which of intersite charge transfer or charge disproportionation is practical.

Carboxylated SiO2-coated α-Fe nanoparticles: towards a versatile platform for biomedical applications.

Carboxylated SiO2-coated α-Fe nanoparticles have been successfully prepared via CaH2-mediated reduction of SiO2-coated Fe3O4 nanoparticles followed by surface carboxylation. These α-Fe-based nanoparticles, which are characterized by ease of coating with additional functional groups, a large magnetization of 154 emu per g-Fe, enhanced corrosion resistivity, excellent aqueous dispersibility, and low cytotoxicity, have potential to be a versatile platform in biomedical applications.

Low temperature solventless synthesis and characterization of Ni and Fe magnetic nanoparticles.

We have successfully implemented a facile, one-pot solventless synthesis procedure starting from acetylacetonate salts and CaH(2) to obtain carbon-coated ferromagnetic metallic Ni and Fe nanoparticles at low temperature. The use of CaH(2) as a reductant drastically reduces reaction temperature down to 140 °C.

(Sr(1-x)Ba(x))FeO2 (0.4 ≤ x ≤ 1): a new oxygen-deficient perovskite structure.

Topochemical reduction of (layered) perovskite iron oxides with metal hydrides has so far yielded stoichiometric compositions with ordered oxygen defects with iron solely in FeO(4) square planar coordination. Using this method, we have successfully obtained a new oxygen-deficient perovskite, (Sr(1-x)Ba(x))FeO(2) (0.4 ≤ x ≤ 1.0), revealing that square planar coordination can coexist with other 3-6-fold coordination geometries. This BaFeO(2) structure is analogous to the LaNiO(2.5) structure in that one-dimensional octahedral chains are linked by planar units, but differs in that one of the octahedral chains contains a significant amount of oxygen vacancies and that all the iron ions are exclusively divalent in the high-spin state. Mössbauer spectroscopy demonstrates, despite the presence of partial oxygen occupations and structural disorders, that the planar-coordinate Fe(2+) ions are bonded highly covalently, which accounts for the formation of the unique structure. At the same time, a rigid 3D Fe-O-Fe framework contributes to structural stabilization. Powder neutron diffraction measurements revealed a G-type magnetic order with a drastic decrease of the Néel temperature compared to that of SrFeO(2), presumably due to the effect of oxygen disorder/defects. We also performed La substitution at the Ba site and found that the oxygen vacancies act as a flexible sink to accommodate heterovalent doping without changing the Fe oxidation and spin state, demonstrating the robustness of this new structure against cation substitution.

Ligand-hole localization in oxides with unusual valence Fe.

Unusual high-valence states of iron are stabilized in a few oxides. A-site-ordered perovskite-structure oxides contain such iron cations and exhibit distinct electronic behaviors at low temperatures, e.g. charge disproportionation (4Fe4⁺ → 2Fe³âº + 2Fe5⁺) in CaCu3Fe4O12 and intersite charge transfer (3Cu²âº + 4Fe³·75⁺ → 3Cu³âº + 4Fe³âº) in LaCu3Fe4O12. Here we report the synthesis of solid solutions of CaCu3Fe4O12 and LaCu3Fe4O12 and explain how the instabilities of their unusual valence states of iron are relieved. Although these behaviors look completely different from each other in simple ionic models, they can both be explained by the localization of ligand holes, which are produced by the strong hybridization of iron d and oxygen p orbitals in oxides. The localization behavior in the charge disproportionation of CaCu3Fe4O12 is regarded as charge ordering of the ligand holes, and that in the intersite charge transfer of LaCu3Fe4O12 is regarded as a Mott transition of the ligand holes.

Epitaxial thin films of ATiO(3-x)H(x) (A = Ba, Sr, Ca) with metallic conductivity.

Epitaxial thin films of titanium perovskite oxyhydride ATiO(3-x)H(x) (A = Ba, Sr, Ca) were prepared by CaH(2) reduction of epitaxial ATiO(3) thin films deposited on a (LaAlO(3))(0.3)(SrAl(0.5)Ta(0.5)O(3))(0.7) substrate. Secondary ion mass spectroscopy detected a substantial amount and uniform distribution of hydride within the film. SrTiO(3)/LSAT thin film hydridized at 530 °C for 1 day had hydride concentration of 4.0 × 10(21) atoms/cm(3) (i.e., SrTiO(2.75)H(0.25)). The electric resistivity of all the ATiO(3-x)H(x) films exhibited metallic (positive) temperature dependence, as opposed to negative as in BaTiO(3-x)H(x) powder, revealing that ATiO(3-x)H(x) are intrinsically metallic, with high conductivity of 10(2)-10(4) S/cm. Treatment with D(2) gas results in hydride/deuteride exchange of the films; these films should be valuable in further studies on hydride diffusion kinetics. Combined with the materials' inherent high electronic conductivity, new mixed electron/hydride ion conductors may also be possible.

An oxyhydride of BaTiO3 exhibiting hydride exchange and electronic conductivity.

In oxides, the substitution of non-oxide anions (F(-),S(2-),N(3-) and so on) for oxide introduces many properties, but the least commonly encountered substitution is where the hydride anion (H(-)) replaces oxygen to form an oxyhydride. Only a handful of oxyhydrides have been reported, mainly with electropositive main group elements or as layered cobalt oxides with unusually low oxidation states. Here, we present an oxyhydride of the perhaps most well-known perovskite, BaTiO(3), as an O(2-)/H(-) solid solution with hydride concentrations up to 20% of the anion sites. BaTiO(3-x)H(x) is electronically conducting, and stable in air and water at ambient conditions. Furthermore, the hydride species is exchangeable with hydrogen gas at 400 °C. Such an exchange implies diffusion of hydride, and interesting diffusion mechanisms specific to hydrogen may be at play. Moreover, such a labile anion in an oxide framework should be useful in further expanding the mixed-anion chemistry of the solid state.

Development of a novel composite material with carbon nanotubes assisted by self-assembled peptides designed in conjunction with ß-sheet formation.

A novel composite material is developed with single-walled carbon nanotubes (SWCNTs) and artificially designed peptides, and its chemical and physicochemical characteristics are evaluated with an aim toward biomedical application. The peptides were designed to form a ß-sheet structure that would be suitable for wrapping SWCNTs. The complex of SWCNTs and peptide (SWCNT-peptide) showed good dispersibility in aqueous media and was considerably stable even in the absence of an excess amount of peptide in the media. The formation of SWCNT-peptide was confirmed by its performance in water, atomic force microscopy and transmission electron microscopy observation, and molecular modeling. The possibility of introducing various functions to SWCNT-peptide was also demonstrated by several methods, such as introduction of special amino acids, chemical modification, and additional complex formation based on electrostatic interaction. These results suggest the potential of the SWCNT-peptide complex as a molecular platform on which a desirable structure and/or function can be constructed for biomedical and industrial application.

Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles.

Magnetic bimetallic CoPt nanoparticles are synthesized in the solvent channels of hen egg white lysozyme crystals by the reduction of Co(2+) and Pt(2+) ions pre-organized on the interior surface of the solvent channels. By using different lysozyme crystal systems, the magnetic properties of CoPt nanoparticles can be controlled.

A Photoconductive, Thiophene-Fullerene Double-Cable Polymer, Nanorod Device.

Gold/double-cable copolymer/gold multisegmented nanorods were prepared electrochemically via a template-based method. These "bulk heterojunction" nanorods showed photoconductivity providing us with a platform to study photoinduced charge separation/transport at the nanointerface and begin to think about the rational design of nanoscale solar cells based on such structures.