Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 17 de 17
Filtrar
Mais filtros










Base de dados
Intervalo de ano de publicação
1.
Artigo em Inglês | MEDLINE | ID: mdl-38248538

RESUMO

Accurate determination of the concentration of alcohols and their metabolites is important in forensics and in several life science areas. A new headspace gas chromatography-mass spectrometry method has been developed to quantify alcohols and their oxidative products using isotope-labeled internal standards. The limit of detection (LOD) of the analytes in the developed method was 0.211 µg/mL for methanol, 0.158 µg/mL for ethanol, 0.157 µg/mL for isopropanol, 0.010 µg/mL for n-propanol, 0.157 µg/mL for acetone, and 0.209 µg/mL for acetaldehyde. The precision and accuracy of the method were evaluated, and the relative standard deviation percentages were found to be less than 3%. This work demonstrates the application of this method, specifically in quantifying the concentration of oxidative products of alcohol and other minor alcohols found in hand sanitizers, which have become an essential household item since the COVID-19 pandemic. Apart from the major components, the minor alcohols found in hand sanitizers include methanol, isopropanol, and n-propanol. The concentration range of these minor alcohols found in ethanol-based hand sanitizer samples was as follows: methanol, 0.000921-0.0151 mg/mL; isopropanol, 0.454-13.8 mg/mL; and n-propanol, 0.00474-0.152 mg/mL. In ethanol-based hand sanitizers, a significant amount of acetaldehyde (0.00623-0.231 mg/mL) was observed as an oxidation product, while in the isopropanol-based hand sanitizer, acetone (0.697 mg/mL) was observed as an oxidation product. The concentration of acetaldehyde in ethanol-based hand sanitizers significantly increased with storage time and temperature, whereas no such increase in acetone concentration was observed in isopropanol-based hand sanitizers with storage time and temperature. In two of the selected hand sanitizers, the acetaldehyde levels increased by almost 200% within a week when stored at room temperature. Additionally, exposing the hand sanitizers to a temperature of 45 °C for 24 h resulted in a 100% increase in acetaldehyde concentration. On the contrary, the acetone level remained constant upon the change in storage time and temperature.


Assuntos
Higienizadores de Mão , Metanol , Humanos , Acetaldeído , Acetona , 2-Propanol , 1-Propanol , Temperatura , Cromatografia Gasosa-Espectrometria de Massas , Pandemias , Etanol
2.
Chem Res Toxicol ; 28(12): 2352-63, 2015 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-26447562

RESUMO

The DNA of all organisms is metabolically active due to persistent endogenous DNA damage, repair, and enzyme-mediated base modification pathways important for epigenetic reprogramming and antibody diversity. The free bases released from DNA either spontaneously or by base excision repair pathways constitute DNA metabolites in living tissues. In this study, we have synthesized and characterized the stable-isotope standards for a series of pyrimidines derived from the normal DNA bases by oxidation and deamination. We have used these standards to measure free bases in small molecule extracts from rat brain. Free bases are observed in extracts, consistent with both endogenous DNA damage and 5-methylcytosine demethylation pathways. The most abundant free base observed is uracil, and the potential sources of uracil are discussed. The free bases measured in tissue extracts constitute the end product of DNA metabolism and could be used to reveal metabolic disturbances in human disease.


Assuntos
Química Encefálica , Encéfalo/metabolismo , Dano ao DNA , Pirimidinas/química , Animais , Cromatografia Líquida de Alta Pressão , Cromatografia Gasosa-Espectrometria de Massas , Espectroscopia de Ressonância Magnética , Estrutura Molecular , Oxirredução , Ratos
3.
Nucleic Acids Res ; 42(14): 9063-73, 2014 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25053838

RESUMO

Telomeric DNA can form duplex regions or single-stranded loops that bind multiple proteins, preventing it from being processed as a DNA repair intermediate. The bases within these regions are susceptible to damage; however, mechanisms for the repair of telomere damage are as yet poorly understood. We have examined the effect of three thymine (T) analogs including uracil (U), 5-fluorouracil (5FU) and 5-hydroxymethyluracil (5hmU) on DNA-protein interactions and DNA repair within the GGTTAC telomeric sequence. The replacement of T with U or 5FU interferes with Pot1 (Pot1pN protein of Schizosaccharomyces pombe) binding. Surprisingly, 5hmU substitution only modestly diminishes Pot1 binding suggesting that hydrophobicity of the T-methyl group likely plays a minor role in protein binding. In the GGTTAC sequence, all three analogs can be cleaved by DNA glycosylases; however, glycosylase activity is blocked if Pot1 binds. An abasic site at the G or T positions is cleaved by the endonuclease APE1 when in a duplex but not when single-stranded. Abasic site formation thermally destabilizes the duplex that could push a damaged DNA segment into a single-stranded loop. The inability to enzymatically cleave abasic sites in single-stranded telomere regions would block completion of the base excision repair cycle potentially causing telomere attrition.


Assuntos
Reparo do DNA , Proteínas de Schizosaccharomyces pombe/metabolismo , Proteínas de Ligação a Telômeros/metabolismo , Telômero/química , Telômero/metabolismo , Uracila/química , Sequência de Bases , Sítios de Ligação , DNA/química , DNA/metabolismo , DNA Liase (Sítios Apurínicos ou Apirimidínicos)/metabolismo , Fluoruracila/química , Fluoruracila/metabolismo , Pentoxil (Uracila)/análogos & derivados , Pentoxil (Uracila)/química , Pentoxil (Uracila)/metabolismo , Ligação Proteica , Complexo Shelterina , Uracila/metabolismo , Uracila-DNA Glicosidase/metabolismo
4.
Biochemistry ; 52(47): 8590-8, 2013 Nov 26.
Artigo em Inglês | MEDLINE | ID: mdl-24147911

RESUMO

Inflammation-mediated reactive molecules can result in an array of oxidized and halogenated DNA-damage products, including 5-chlorocytosine ((Cl)C). Previous studies have shown that (Cl)C can mimic 5-methylcytosine ((m)C) and act as a fraudulent epigenetic signal, promoting the methylation of previously unmethylated DNA sequences. Although the 5-halouracils are good substrates for base-excision repair, no repair activity has yet been identified for (Cl)C. Because of the apparent biochemical similarities of (m)C and (Cl)C, we have investigated the effects of (m)C and (Cl)C substitution on oligonucleotide structure and dynamics. In this study, we have constructed oligonucleotide duplexes containing C, (Cl)C, and (m)C within a CpG dinucleotide. The thermal and thermodynamic stability of these duplexes were found to be experimentally indistinguishable. Crystallographic structures of duplex oligonucleotides containing (m)C or (Cl)C were determined to 1.2 and 1.9 Å resolution, respectively. Both duplexes are B-form and are superimposable on a previously determined structure of a cytosine-containing duplex with a rmsd of approximately 0.25 Å. NMR solution studies indicate that all duplexes containing cytosine or the cytosine analogues are normal B-form and that no structural perturbations are observed surrounding the site of each substitution. The magnitude of the base-stacking-induced upfield shifts for nonexchangeable base proton resonances are similar for each of the duplexes examined, indicating that neither (m)C nor (Cl)C significantly alter base-stacking interactions. The (Cl)C analogue is paired with G in an apparently normal geometry; however, the G-imino proton of the (Cl)C-G base pair resonates to higher field relative to (m)C-G or C-G, indicating a weaker imino hydrogen bond. Using selective ¹5N-enrichment and isotope-edited NMR, we observe that the amino group of (Cl)C rotates at roughly half of the rate of the corresponding amino groups of the C-G and (m)C-G base pairs. The altered chemical shifts of hydrogen-bonding proton resonances for the (Cl)C-G base pair as well as the slower rotation of the (Cl)C amino group can be attributed to the electron-withdrawing inductive property of the 5-chloro substituent. The apparent similarity of duplexes containing (m)C and (Cl)C demonstrated here is in accord with results of previous biochemical studies and further suggests that (Cl)C is likely to be an unusually persistent form of DNA damage.


Assuntos
5-Metilcitosina/química , Citosina/análogos & derivados , Indicadores e Reagentes/química , Oligonucleotídeos/química , 5-Metilcitosina/metabolismo , Citosina/química , Citosina/metabolismo , Temperatura Alta , Ligação de Hidrogênio , Indicadores e Reagentes/metabolismo , Espectroscopia de Ressonância Magnética , Isótopos de Nitrogênio , Conformação de Ácido Nucleico , Desnaturação de Ácido Nucleico , Oligonucleotídeos/metabolismo , Difração de Raios X
5.
Chem Res Toxicol ; 23(4): 740-8, 2010 Apr 19.
Artigo em Inglês | MEDLINE | ID: mdl-20104909

RESUMO

Inflammation-mediated hypochlorous acid (HOCl) can damage DNA, DNA precursors, and other biological molecules, thereby producing an array of damage products such as 5-chlorouracil (ClU). In this study, we prepared and studied 5-chloro-2'-deoxyuridine (CldU) and ClU-containing oligonucleotide templates. We demonstrate that human K-562 cells grown in culture with 10 muM CldU incorporate substantial amounts of CldU without significant toxicity. When in the template, ClU residues pair with dATP but also with dGTP, in a pH-dependent manner with incorporation by human polymerase beta, avian myeloblastosis virus reverse transcriptase (AMV-RT), and Escherichia coli Klenow fragment (exo(-)) polymerase. The enhanced miscoding of ClU is attributed to the electron-withdrawing 5-chlorine substituent that promotes the formation of an ionized ClU-G mispair. When mispaired with G, ClU is targeted for removal by human glycosylases. The formation, incorporation, and repair of ClU could promote transition mutations and other forms of heritable DNA damage.


Assuntos
DNA Polimerase beta/metabolismo , Uracila/análogos & derivados , Pareamento Incorreto de Bases , Dano ao DNA , DNA Glicosilases , Reparo de Erro de Pareamento de DNA , DNA Polimerase I/metabolismo , Desoxiuridina/análogos & derivados , Desoxiuridina/farmacologia , Humanos , Concentração de Íons de Hidrogênio , Células K562 , Cinética , DNA Polimerase Dirigida por RNA/metabolismo , Uracila/toxicidade
6.
Biochemistry ; 48(50): 11994-2004, 2009 Dec 22.
Artigo em Inglês | MEDLINE | ID: mdl-19899814

RESUMO

The selection of nucleoside triphosphates by a polymerase is controlled by several energetic and structural features, including base pairing geometry as well as sugar structure and conformation. Whereas base pairing has been considered exhaustively, substantially less is known about the role of sugar modifications for both nucleotide incorporation and primer extension. In this study, we synthesized oligonucleotides containing 2'-fluoro-modified nucleosides with constrained sugar pucker in an internucleotide position and, for the first time, at a primer 3'-end. The thermodynamic stability of these duplexes was examined. The nucleoside 2'-deoxy-2'-fluoroarabinofuranosyluracil [U(2'F(ara))] favors the 2'-endo conformation (DNA-like), while 2'-deoxy-2'-fluororibofuranosyluracil [U(2'F(ribo))] favors the 3'-endo conformation (RNA-like). Oligonucleotides containing U(2'F(ara)) have slightly higher melting temperatures (T(m)) than those containing U(2'F(ribo)) when located in internucleotide positions or at the 3'-end and when correctly paired with adenine or mispaired with guanine. However, both modifications decrease the magnitude of DeltaH degrees and DeltaS degrees for duplex formation in all sequence contexts. In examining the thermodynamic properties for this set of oligonucleotides, we find entropy-enthalpy compensation is apparent. Our thermodynamic findings led to a series of experiments with DNA ligase that reveal, contrary to expectation based upon observed T(m) values, that the duplex containing the U(2'F(ribo)) analogue is more easily ligated. The 2'-fluoro-2'-deoxynucleosides examined here are valuable probes of the impact of sugar constraint and are also members of an important class of antitumor and antiviral agents. The data reported here may facilitate an understanding of the biological properties of these agents, as well as the contribution of sugar conformation to replication fidelity.


Assuntos
Pareamento Incorreto de Bases , Pareamento de Bases , Carboidratos/química , Termodinâmica , Configuração de Carboidratos , Sequência de Carboidratos , DNA Ligase Dependente de ATP , DNA Ligases/química , Desoxiuridina/análogos & derivados , Desoxiuridina/química , Proteínas de Escherichia coli/química , Humanos , Dados de Sequência Molecular , Ácidos Nucleicos Heteroduplexes/química , Oligonucleotídeos/síntese química , Proteínas de Ligação a Poli-ADP-Ribose , Proteínas de Xenopus
7.
Biochemistry ; 48(47): 11312-8, 2009 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-19863157

RESUMO

Hypochlorous acid (HOCl) from activated neutrophils at sites of inflammation can react with and damage biological molecules, including nucleic acids. The reaction of HOCl with cytosine analogues can generate multiple products, including 5-chlorouracil (ClU). In this paper, we have constructed oligonucleotides containing ClU paired opposite guanine (ClU-G). Melting studies indicate that oligonucleotide duplexes containing the ClU-G mispair are substantially less stable than those containing a ClU-A base pair. The melting temperature of the ClU-G mispair is not experimentally distinguishable from that of a T-G pair. NMR studies indicate that the ClU-G base pair adopts a wobble geometry at neutral pH, similar to a T-G mispair. The exchangeable protons of the ClU-G mispair broaden rapidly with an increase in temperature, indicating that the ClU-G mispair is less stable and opens more easily than the surrounding adjacent base pairs. Unlike the ClU-A base pair studied previously [Theruvathu, J. A., et al. (2009) Biochemistry 48, 7539-7546], the ClU-G mispair undergoes a pH-dependent structural change, assuming an ionized base pair configuration that approximates a Watson-Crick base pair at higher pH. Ionization of ClU in a DNA template could promote mispair formation and mutation, in accord with previous studies on other 5-halouracil analogues. The electron-withdrawing 5-chloro substituent facilitates ionization of the ClU N3 proton, promoting mispair formation, but it also renders the glycosidic bond susceptible to base cleavage by DNA repair glycosylases.


Assuntos
Pareamento de Bases , Guanina/química , Concentração de Íons de Hidrogênio , Uracila/análogos & derivados , Sítios de Ligação , Reparo do DNA , Guanina/metabolismo , Ligação de Hidrogênio , Espectroscopia de Ressonância Magnética , Prótons , Temperatura , Termodinâmica , Uracila/química , Uracila/metabolismo
8.
Biochemistry ; 48(31): 7539-46, 2009 Aug 11.
Artigo em Inglês | MEDLINE | ID: mdl-19618901

RESUMO

Inflammation-mediated reactive molecules can damage DNA by oxidation and chlorination. The biological consequences of this damage are as yet incompletely understood. In this paper, we have constructed oligonucleotides containing 5-chlorouracil (ClU), one of the known inflammation damage products. The thermodynamic stability, base pairing configuration, and duplex conformation of oligonucleotides containing ClU paired opposite adenine have been examined. NMR spectra reveal that the ClU-A base pair adopts a geometry similar to that of the T-A base pair, and the ClU-A base pair-containing duplex adopts a normal B-form conformation. The line width of the imino proton of the ClU residue is substantially greater than that of the corresponding T imino proton; however, this difference is not attributed to a reduced thermal or thermodynamic stability or to an increased level of proton exchange with solvent. While the NMR studies reveal an increased level of chemical exchange for the ClU imino proton of the ClU-A base pair, the ClU residue is not a target for removal by the Escherichia coli mispaired uracil glycosylase, which senses damage-related helix instability. The results of this study are consistent with previous reports indicating that the DNA of replicating cells can tolerate substantial substitution with ClU. The fraudulent, pseudo-Watson-Crick ClU-A base pair is sufficiently stable to avoid glycosylase removal and, therefore, might constitute a persistent form of cellular DNA damage.


Assuntos
Adenina/química , Pareamento de Bases , Conformação de Ácido Nucleico , Ácidos Nucleicos Heteroduplexes/síntese química , Oligonucleotídeos/síntese química , Uracila/análogos & derivados , Pareamento Incorreto de Bases/genética , Pareamento de Bases/genética , Desoxiuridina/química , Ácidos Nucleicos Heteroduplexes/genética , Estabilidade de RNA/genética , Termodinâmica , Uracila/química
9.
Chem Res Toxicol ; 22(6): 1194-204, 2009 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-19480391

RESUMO

The nucleoside analogue 5-aza-2'-deoxycytidine (Decitabine, DAC) is one of several drugs in clinical use that inhibit DNA methyltransferases, leading to a decrease of 5-methylcytosine in newly replicated DNA and subsequent transcriptional activation of genes silenced by cytosine methylation. In addition to methyltransferase inhibition, DAC has demonstrated toxicity and potential mutagenicity, and can induce a DNA-repair response. The mechanisms accounting for these events are not well understood. DAC is chemically unstable in aqueous solutions, but there is little consensus between previous reports as to its half-life and corresponding products of decomposition at physiological temperature and pH, potentially confounding studies on its mechanism of action and long-term use in humans. Here, we have employed a battery of analytical methods to estimate kinetic rates and to characterize DAC decomposition products under conditions of physiological temperature and pH. Our results indicate that DAC decomposes into a plethora of products, formed by hydrolytic opening and deformylation of the triazine ring, in addition to anomerization and possibly other changes in the sugar ring structure. We also discuss the advantages and problems associated with each analytical method used. The results reported here will facilitate ongoing studies and clinical trials aimed at understanding the mechanisms of action, toxicity, and possible mutagenicity of DAC and related analogues.


Assuntos
Azacitidina/análogos & derivados , Inibidores Enzimáticos/química , Azacitidina/química , Cromatografia Líquida de Alta Pressão , Metilases de Modificação do DNA/antagonistas & inibidores , Metilases de Modificação do DNA/metabolismo , Decitabina , Cromatografia Gasosa-Espectrometria de Massas , Meia-Vida , Concentração de Íons de Hidrogênio , Cinética , Espectroscopia de Ressonância Magnética , Espectrofotometria Ultravioleta , Temperatura , Fatores de Tempo
10.
J Biol Chem ; 284(23): 15835-46, 2009 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-19324873

RESUMO

hSMUG1 (human single-stranded selective monofunctional uracil-DNA glyscosylase) is one of three glycosylases encoded within a small region of human chromosome 12. Those three glycosylases, UNG (uracil-DNA glycosylase), TDG (thymine-DNA glyscosylase), and hSMUG1, have in common the capacity to remove uracil from DNA. However, these glycosylases also repair other lesions and have distinct substrate preferences, indicating that they have potentially redundant but not overlapping physiological roles. The mechanisms by which these glycosylases locate and selectively remove target lesions are not well understood. In addition to uracil, hSMUG1 has been shown to remove some oxidized pyrimidines, suggesting a role in the repair of DNA oxidation damage. In this paper, we describe experiments in which a series of oligonucleotides containing purine and pyrimidine analogs have been used to probe mechanisms by which hSMUG1 distinguishes potential substrates. Our results indicate that the preference of hSMUG1 for mispaired uracil over uracil paired with adenine is best explained by the reduced stability of a duplex containing a mispair, consistent with previous reports with Escherichia coli mispaired uracil-DNA glycosylase. We have also extended the substrate range of hSMUG1 to include 5-carboxyuracil, the last in the series of damage products from thymine methyl group oxidation. The properties used by hSMUG1 to select damaged pyrimidines include the size and free energy of solvation of the 5-substituent but not electronic inductive properties. The observed distinct mechanisms of base selection demonstrated for members of the uracil glycosylase family help explain how considerable diversity in chemical lesion repair can be achieved.


Assuntos
Uracila-DNA Glicosidase/metabolismo , Linhagem Celular , Clonagem Molecular , Primers do DNA , Reparo do DNA , Células HeLa , Humanos , Cinética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Termodinâmica , Uracila-DNA Glicosidase/química , Uracila-DNA Glicosidase/genética
11.
Anal Biochem ; 379(2): 196-207, 2008 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-18485883

RESUMO

Oligonucleotides containing modified bases are commonly used for biochemical and biophysical studies to assess the impact of specific types of chemical damage on DNA structure and function. In contrast to the synthesis of oligonucleotides with normal DNA bases, oligonucleotide synthesis with modified bases often requires modified synthetic or deprotection conditions. Furthermore, several modified bases of biological interest are prone to further damage during synthesis and oligonucleotide isolation. In this article, we describe the application of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS) to the characterization of a series of modified synthetic oligonucleotides. The potential for and limits in obtaining high mass accuracy for confirming oligonucleotide composition are discussed. Examination of the isotope cluster is also proposed as a method for confirming oligonucleotide elemental composition. MALDI-TOF-MS analysis of the unpurified reaction mixture can be used to confirm synthetic sequence and to reveal potential problems during synthesis. Analysis during and after purification can yield important information on depurination and base oxidation. It can also reveal unexpected problems that can occur with nonstandard synthesis, deprotection, or purification strategies. Proper characterization of modified oligonucleotides is essential for the correct interpretation of experiments performed with these substrates, and MALDI-TOF-MS analysis provides a simple yet extensive method of characterization that can be used at multiple stages of oligonucleotide production and use.


Assuntos
Oligonucleotídeos/química , Oligonucleotídeos/metabolismo , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos , Artefatos , Composição de Bases , Sequência de Bases , DNA/química , DNA/genética , DNA/metabolismo , Dano ao DNA , Exodesoxirribonucleases/metabolismo , Hidrólise , Desnaturação de Ácido Nucleico , Oligonucleotídeos/síntese química , Oligonucleotídeos/genética , Oxirredução , Purinas/química , Termodinâmica
12.
J Biol Chem ; 283(14): 8829-36, 2008 Apr 04.
Artigo em Inglês | MEDLINE | ID: mdl-18208817

RESUMO

The repair of the multitude of single-base lesions formed daily in cells of all living organisms is accomplished primarily by the base excision repair pathway that initiates repair through a series of lesion-selective glycosylases. In this article, single-turnover kinetics have been measured on a series of oligonucleotide substrates containing both uracil and purine analogs for the Escherichia coli mispaired uracil glycosylase (MUG). The relative rates of glycosylase cleavage have been correlated with the free energy of helix formation and with the size and electronic inductive properties of a series of uracil 5-substituents. Data are presented that MUG can exploit the reduced thermodynamic stability of mispairs to distinguish U:A from U:G pairs. Discrimination against the removal of thymine results primarily from the electron-donating property of the thymine 5-methyl substituent, whereas the size of the methyl group relative to a hydrogen atom is a secondary factor. A series of parameters have been obtained that allow prediction of relative MUG cleavage rates that correlate well with observed relative rates that vary over 5 orders of magnitude for the series of base analogs examined. We propose that these parameters may be common among DNA glycosylases; however, specific glycosylases may focus more or less on each of the parameters identified. The presence of a series of glycosylases that focus on different lesion properties, all coexisting within the same cell, would provide a robust and partially redundant repair system necessary for the maintenance of the genome.


Assuntos
Reparo do DNA/fisiologia , Proteínas de Escherichia coli/metabolismo , Escherichia coli/enzimologia , Genoma Bacteriano/fisiologia , Nucleotídeos/metabolismo , Timina DNA Glicosilase/metabolismo , Proteínas de Escherichia coli/química , Cinética , Nucleotídeos/química , Timina DNA Glicosilase/química
13.
Mech Ageing Dev ; 128(9): 494-502, 2007 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-17692895

RESUMO

The 8,5'-cyclopurine-2'-deoxynucleosides (cPu) are unique oxidatively induced DNA lesions in that they are specifically repaired by NER. In the absence of NER, a possible mechanism for cPu removal is spontaneous glycosidic bond hydrolysis followed by enzymic processing. Such a mechanism could be significant if the glycosidic bond in cPu were substantially destabilized, as shown for other DNA lesions. Therefore, we investigated the stability of the glycosidic bond in a cPu, (5'S)-8,5'-cyclo-2'-deoxyadenosine (S-cdA) against acid hydrolysis. For comparison, we also studied 8-hydroxy-2'-deoxyadenosine (8-OH-dA). We found that the glycosidic bond in S-cdA is approximately 40-fold more resistant to glycosidic bond hydrolysis compared to dA. Interestingly, under the same conditions, the glycosidic bond in 8-OH-dA was even more stable than in S-cdA. These studies effectively rule out any mechanism for the removal of S-cdA or 8-OH-dA from DNA that requires spontaneous glycosidic bond hydrolysis, and further support the proposed role of cPu in the neurodegeneration observed in xeroderma pigmentosum patients who lack NER. Of broader significance, since NER does not function in non-transcribed DNA sequences of terminally differentiated cells, including neurons, cPu are expected to accumulate in such sequences even in individuals with normal NER, which could be important in the ageing process.


Assuntos
Dano ao DNA , Desoxiadenosinas/química , Formiatos/química , Estresse Oxidativo , Envelhecimento/genética , Cromatografia Líquida de Alta Pressão , Reparo do DNA , Desoxiadenosinas/metabolismo , Humanos , Hidrólise , Cinética , Espectrometria de Massas , Temperatura , Xeroderma Pigmentoso/enzimologia , Xeroderma Pigmentoso/genética
14.
Alcohol ; 35(3): 187-93, 2005 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-16054980

RESUMO

Alcoholic beverage consumption is classified as a known human carcinogen, causally related to an increased risk of cancer of the upper gastrointestinal tract. The formation of acetaldehyde from ethanol metabolism seems to be the major mechanism underlying this effect. Acetaldehyde is carcinogenic in rodents and causes sister chromatid exchanges and chromosomal aberrations in human cells. The best-studied DNA adduct from acetaldehyde is N(2)-ethyl-2'-deoxyguanosine, which is increased in liver DNA obtained from ethanol-treated rodents and in white blood cells obtained from human alcohol abusers. However, the carcinogenic relevance of this adduct is unclear in view of the lack of evidence that it is mutagenic in mammalian cells. A different DNA adduct, 1,N(2)-propano-2'-deoxyguanosine (PdG), can also be formed from acetaldehyde in the presence of histones and other basic molecules. PdG has been shown to be responsible for the genotoxic and mutagenic effects of crotonaldehyde. The PdG adduct can exist in either of two forms: a ring-closed form or a ring-opened aldehyde form. Whereas the ring-closed form is mutagenic, the aldehyde form can participate in the formation of secondary lesions, including DNA-protein cross-links and DNA interstrand cross-links. The formation of these types of complex secondary DNA lesions resulting from PdG may explain many of the observed genotoxic effects of acetaldehyde described above. Repair of PdG and its associated adducts is complex, involving multiple pathways. Inherited variation in the genes encoding the proteins involved in the repair of PdG and its secondary adducts may contribute to susceptibility to alcoholic beverage-related carcinogenesis.


Assuntos
Acetaldeído/metabolismo , Acetaldeído/toxicidade , Consumo de Bebidas Alcoólicas/efeitos adversos , Adutos de DNA/metabolismo , Neoplasias/etiologia , Neoplasias/metabolismo , Consumo de Bebidas Alcoólicas/genética , Animais , Reparo do DNA/genética , Humanos , Mutagênicos/toxicidade , Neoplasias/genética , Polimorfismo Genético/genética , Fatores de Risco
15.
Nucleic Acids Res ; 33(11): 3513-20, 2005.
Artigo em Inglês | MEDLINE | ID: mdl-15972793

RESUMO

Alcoholic beverage consumption is associated with an increased risk of upper gastrointestinal cancer. Acetaldehyde (AA), the first metabolite of ethanol, is a suspected human carcinogen, but the molecular mechanisms underlying AA carcinogenicity are unclear. In this work, we tested the hypothesis that polyamines could facilitate the formation of mutagenic alpha-methyl-gamma-hydroxy-1,N2-propano-2'-deoxyguanosine (Cr-PdG) adducts from biologically relevant AA concentrations. We found that Cr-PdG adducts could be formed by reacting deoxyguanosine with muM concentrations of AA in the presence of spermidine, but not with either AA or spermidine alone. The identities of the Cr-PdG adducts were confirmed by both liquid and gas chromatography-mass spectrometry. Using a novel isotope-dilution liquid chromatography-mass spectrometry assay, we found that in the presence of 5 mM spermidine, AA concentrations of 100 microM and above resulted in the formation of Cr-PdG in genomic DNA. These AA levels are within the range that occurs in human saliva after alcoholic beverage consumption. We also showed that spermidine directly reacts with AA to generate crotonaldehyde (CrA), most likely via an enamine aldol condensation mechanism. We propose that AA derived from ethanol metabolism is converted to CrA by polyamines in dividing cells, forming Cr-PdG adducts, which may be responsible for the carcinogenicity of alcoholic beverage consumption.


Assuntos
Acetaldeído/química , Adutos de DNA/química , Desoxiguanosina/análogos & derivados , Desoxiguanosina/química , Mutagênese , Espermidina/química , Acetaldeído/metabolismo , Aldeídos/química , Adutos de DNA/metabolismo , Desoxiguanosina/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Humanos , Espermidina/farmacologia
16.
Nucleic Acids Res ; 32(18): 5685-92, 2004.
Artigo em Inglês | MEDLINE | ID: mdl-15498925

RESUMO

The activity of DNA topoisomerase I (Top1), an enzyme that regulates DNA topology, is impacted by DNA structure alterations and by the anticancer alkaloid camptothecin (CPT). Here, we evaluated the effect of the acetaldehyde-derived DNA adduct, N2-ethyl-2'-deoxyguanosine (N2-ethyl-dG), on human Top1 nicking and closing activities. Using purified recombinant Top1, we show that Top1 nicking-closing activity remains unaffected in N2-ethyl-dG adducted oligonucleotides. However, the N2-ethyl-dG adduct enhanced CPT-induced Top1-DNA cleavage complexes depending on the relative position of the N2-ethyl-dG adduct with respect to the Top1 cleavage site. The Top1-mediated DNA religation (closing) was selectively inhibited when the N2-ethyl-dG adduct was present immediately 3' from the Top1 site (position +1). In addition, when the N2-ethyl-dG adduct was located at the -5 position, CPT enhanced cleavage at an alternate Top1 cleavage site immediately adjacent to the adduct, which was then at position +1 relative to this new alternate Top1 site. Modeling studies suggest that the ethyl group on the N2-ethyl-dG adduct located at the 5' end of a Top1 site (position +1) sterically blocks the dissociation of CPT from the Top1-DNA complex, thereby inhibiting further the religation (closing) reaction.


Assuntos
Camptotecina/farmacologia , Adutos de DNA/química , DNA Topoisomerases Tipo I/metabolismo , Desoxiguanosina/análogos & derivados , Desoxiguanosina/química , Inibidores Enzimáticos/farmacologia , DNA/química , DNA/metabolismo , Substâncias Macromoleculares , Modelos Moleculares
17.
Org Biomol Chem ; 1(6): 1012-9, 2003 Mar 21.
Artigo em Inglês | MEDLINE | ID: mdl-12929641

RESUMO

Reactions of ozone with some vinyl compounds of the general structure CH2=CH-X were studied in aqueous solution. Rate constants (in brackets, unit: dm3 mol-1 s-1) were determined: acrylonitrile (670), vinyl acetate (1.6 x 10(5)), vinylsulfonic acid (anion, 8.3 x 10(3)), vinyl phenylsulfonate (ca. 200), vinyl diethylphosphonate (3.3 x 10(3)), vinylphosphonic acid (acid, 1 x 10(4); mono-anion, 2.7 x 10(4); di-anion, 1 x 10(5)), vinyl bromide (1 x 10(4)). The main pathway leads to the formation of HOOCH2OH and HC(O)X. As measured by stopped flow with conductometric detection, the latter one may undergo rapid hydrolysis by water, e.g. HC(O)CN (3 s-1). Other HC(O)X hydrolyse much slower, e.g. HC(O)PO3(Et)2 (7 x 10(-3) s-1) and HC(O)P(OH)O2- (too slow to be measured). The OH(-)-induced hydrolyses range from ca. 5 dm3 mol-1 s-1 [HC(O)PO(3)2-] to 3.8 x 10(5) dm3 mol-1 s-1 [HC(O)CN]. HC(O)Br mainly decomposes rapidly (too fast for the determination of the rate) into CO and Br- plus H+, and the competing hydrolysis is of minor importance (3.7%). The slow hydrolysis of HC(O)PO(3)2- at pH 10.2, where HOOCH2OH is rapidly decomposed into CH2O plus H2O2, allows an H2O2-induced decomposition (k = 260 dm3 mol-1 s-1) to take place. Formate and phosphate are the final products.

SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA
...