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2.
Mikrobiologiia ; 84(2): 250-60, 2015.
Artigo em Russo | MEDLINE | ID: mdl-26263632

RESUMO

Biodiversity of sulfate-reducing bacterial communities in the water column of the Gdansk Deep, Baltic Sea, where H2S had been detected in near-bottom layers, was analyzed by PCR with primers for the 16S rRNA genes of six major phylogenetic subgroups of sulfate-reducing bacteria (SRB). Using denaturing gradient gel electrophoresis followed by sequencing, the nucleotide sequences of reamplified dsrB gene fragments from investigated water samples were determined. For the first time the presence of nucleotide sequences of the dsrB gene was detected by PCR in the water samples from all hydrochemical layers, including subsurface oxic waters. The presence of the 16S rRNA genes of representatives of Desulfotomaculum, Desulfococcus-Desulfonema-Desulfosarcina, and Desulfovibrio-Desulfomicrobium SRB subgroups was also revealed throughout the water column of the Gdansk Deep. Analysis of translated amino acid sequences encoded by the dsrB gene demonstrated the highest homology with the relevant sequences of uncultured SRB from various marine habitats.


Assuntos
Deltaproteobacteria/classificação , Desulfotomaculum/classificação , Desulfovibrio/classificação , Genes Bacterianos , Bactérias Redutoras de Enxofre/classificação , Microbiologia da Água , Oceano Atlântico , Contagem de Colônia Microbiana , Deltaproteobacteria/genética , Deltaproteobacteria/metabolismo , Desulfotomaculum/genética , Desulfotomaculum/metabolismo , Desulfovibrio/genética , Desulfovibrio/metabolismo , Genes de RNAr , Sulfeto de Hidrogênio/metabolismo , Consórcios Microbianos/genética , Oxirredução , Filogenia , Reação em Cadeia da Polimerase , RNA Ribossômico 16S/genética , Bactérias Redutoras de Enxofre/genética , Bactérias Redutoras de Enxofre/metabolismo
3.
Mikrobiologiia ; 84(3): 331-43, 2015.
Artigo em Russo | MEDLINE | ID: mdl-26263693

RESUMO

The taxonomic position of hydrocarbon-oxidizing bacterial strains 263 and 32d isolated from formation water of the Daqing petroleum reservoir (PRC) was determined by polyphasic taxonomy techniques, including analysis of the 16S rRNA and the gyrB genes. The major chemotaxonomic characteristics of both strains, including the IV type cell wall, composition of cell wall fatty acids, mycolic acids, and menaquinones, agreed with those typical of Dietzia strains. The DNA G+C content of strains 263 and 32d were 67.8 and 67.6 mol%, respectively. Phylogenetic analysis of the 16S rRNA gene of strain 32d revealed 99.7% similarity to the gene of D. maris, making it possible to identify strain 32d as belonging to this species. The 16S rRNA gene sequence of strain 263 exhibited 99.7 and 99.9% similarity to those of D. natronolimnaea and D. cercidiphylli YIM65002(T), respectively. Analysis of the gyrB genes of the subterranean isolates and of a number of Dietzia type strains confirmed classiffication of strain 32d as a D. maris strain and of strain 263, as a D. natronolimnaea strain. A conclusion was made concerning higher resolving power of phylogenetic analysis of the gyrB gene compared to the 16S rRNA gene analysis in the case of determination of the species position of Dietzia isolates.


Assuntos
Actinomycetales/genética , Genes Bacterianos , Hidrocarbonetos/metabolismo , Petróleo/microbiologia , Filogenia , RNA Ribossômico 16S/genética , Actinomycetales/classificação , Actinomycetales/isolamento & purificação , Actinomycetales/metabolismo , Composição de Bases , Sequência de Bases , Parede Celular/química , DNA Girase/genética , Ácidos Graxos/análise , Dados de Sequência Molecular , Ácidos Micólicos/análise , Oxirredução , Homologia de Sequência do Ácido Nucleico
4.
Mikrobiologiia ; 83(6): 730-42, 2014.
Artigo em Russo | MEDLINE | ID: mdl-25941723

RESUMO

Various previously developed techniques for DNA extraction from the samples with complex physicochemical structure (soils, silts, and sediments) and modifications of these techniques developed in the present work were tested. Their usability for DNA extraction from the sediments of the Kulunda Steppe hypersaline soda lakes was assessed, and the most efficient procedure for indirect (two-stage) DNA extraction was proposed. Almost complete separation of the cell fraction was shown, as well as the inefficiency of nested PCR for analysis of the clone libraries obtained from washed sediments by amplification of the 16S rRNA gene fragments. Analysis of the clone library obtained from the cell fractions of stratified sediments (upper, medium, and lower layers) revealed that in the sediments of Lake Gorchina-3 most eubacterial phylotypes belonged to the class Clostridia, phylum Firmicutes. They were probably specific for this habitatand formed a new, presently unknown high-rank taxon. The data obtained revealed no pronounced stratification of the spe- cies diversity of the eubacterial component of the microbial community inhabiting the sediments (0-20 cm) in the inshore zone of Lake Gorchina-3.


Assuntos
Bactérias/genética , Sedimentos Geológicos/microbiologia , Filogenia , Bactérias/isolamento & purificação , Biodiversidade , DNA/isolamento & purificação , Biblioteca Gênica , Dados de Sequência Molecular , RNA Ribossômico 16S/genética , Sibéria , Microbiologia da Água
5.
Extremophiles ; 17(3): 535-43, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23564266

RESUMO

Two obligately anaerobic sulfidogenic bacterial strains were isolated from the full-scale Thiopaq bioreactor in Lelystad (The Netherlands) removing H2S from biogas under oxygen-limiting and moderately haloalkaline conditions. Strain HSRB-L represents a dominant culturable sulfate-reducing bacterium in the reactor. It utilizes formate, H2 (with acetate as C-source) and lactate as e-donors, and sulfate, thiosulfate and sulfite as e-acceptors. It is haloalkalitolerant, with a pH range for lithotrophic growth from 7.5 to 9.7 (optimum at 8.5-9) and a salt range from 0.1 to 1.75 M total Na(+) (optimum at 0.6 M). The strain is a member of the genus Desulfonatronum and is proposed as a novel species D. alkalitolerans. The second strain, strain HTRB-L1, represents a dominant thiosulfate/sulfur reducer in the reactor. It is an obligate anaerobe utilizing formate and H2 (with acetate as C-source), lactate, pyruvate and fumarate as e-donors, and thiosulfate (incomplete reduction), sulfur, arsenate and fumarate as e-acceptors. With lactate as e-donor it also grows as an ammonifyer in the presence of nitrate and nitrite. HTRB-L1 is haloalkalitolerant, with a pH range for lithotrophic growth from 7.1 to 9.7 (optimum at 8.5) and a salt range from 0.6 to 1.5 M total Na(+) (optimum at 0.6 M). Phylogenetic analysis showed that strain HTRB-L1 is a novel species within the genus Sulfurospirillum (Epsilonproteobacteria) for which a name Sulfurospirillum alkalitolerans is proposed.


Assuntos
Reatores Biológicos/microbiologia , Deltaproteobacteria/isolamento & purificação , Epsilonproteobacteria/isolamento & purificação , Sequência de Bases , DNA Bacteriano/química , Deltaproteobacteria/genética , Deltaproteobacteria/metabolismo , Epsilonproteobacteria/genética , Epsilonproteobacteria/metabolismo , Dados de Sequência Molecular , Filogenia , Análise de Sequência de DNA , Enxofre/metabolismo
6.
Extremophiles ; 16(6): 883-94, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23007247

RESUMO

Chitin is produced in large amounts in hypersaline habitats with neutral pH due to the high biomass production of brine shrimp Artemia. Recently, a high abundance of Artemia was also noticed in hypersaline soda lakes in the Kulunda Steppe (Altai, Russia), which prompted us to survey the possibility of microbial chitin utilization at extremely haloalkaline conditions in soda brines. Most active chitin utilisation-supporting microbial growth was found at anaerobic conditions at pH 10 and up to 3.5 M total Na(+). At aerobic conditions, the degradation of chitin was slower, mostly incomplete and active at <2 M total Na(+), although very slow partial degradation was possible up to 4 M Na(+). Anaerobic enrichments at pH 10 yielded two different groups of obligately haloalkaliphilic fermentative anaerobes, exclusively specialized to utilise insoluble chitin as the only growth substrate. One group was represented by a single strain growing at moderate salinity, and another comprised multiple isolates growing up to 3.5 M Na(+). These groups represent two novel bacterial phyla not closely related to any other cultured bacteria. Aerobic enrichments from the lake sediments were dominated by several obligately haloalkaliphilic members of the genus Marinimicrobium in the Gammaproteobacteria. They were less specialised than the anaerobes and grew with chitin and its monomer and oligomers at a pH of 10 up to 2.5 M Na(+). Furthermore, several strains of haloalkaliphilic Gram-positive chitinolytics belonging to bacilli and actinobacteria were isolated from soda lake sediments and surrounding soda soils. In general, the results indicate the presence of an active and diverse haloalkaliphilic chitinolytic microbial community in hypersaline soda habitats.


Assuntos
Quitina/metabolismo , Gammaproteobacteria/isolamento & purificação , Gammaproteobacteria/metabolismo , Anaerobiose , Sequência de Bases , Ecossistema , Gammaproteobacteria/genética , Genes de RNAr , Sedimentos Geológicos/química , Sedimentos Geológicos/microbiologia , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Filogenia , Tolerância ao Sal , Sibéria , Sódio
7.
Extremophiles ; 16(4): 597-605, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22622646

RESUMO

An anaerobic enrichment culture inoculated with a sample of sediments from soda lakes of the Kulunda Steppe with elemental sulfur as electron acceptor and formate as electron donor at pH 10 and moderate salinity inoculated with sediments from soda lakes in Kulunda Steppe (Altai, Russia) resulted in the domination of a Gram-positive, spore-forming bacterium strain AHT28. The isolate is an obligate anaerobe capable of respiratory growth using elemental sulfur, thiosulfate (incomplete reduction) and arsenate as electron acceptor with H2, formate, pyruvate and lactate as electron donor. Growth was possible within a pH range from 9 to 10.5 (optimum at pH 10) and a salt concentration at pH 10 from 0.2 to 2 M total Na+ (optimum at 0.6 M). According to the phylogenetic analysis, strain AHT28 represents a deep independent lineage within the order Bacillales with a maximum of 90 % 16S rRNA gene similarity to its closest cultured representatives. On the basis of its distinct phenotype and phylogeny, the novel haloalkaliphilic anaerobe is suggested as a new genus and species, Desulfuribacillus alkaliarsenatis (type strain AHT28(T) = DSM24608(T) = UNIQEM U855(T)).


Assuntos
Bacillales , Lagos/microbiologia , Microbiologia da Água , Arseniatos/metabolismo , Bacillales/classificação , Bacillales/citologia , Bacillales/genética , Bacillales/isolamento & purificação , Bacillales/metabolismo , Sequência de Bases , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Oxirredução , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Sibéria , Enxofre/metabolismo
8.
Extremophiles ; 16(3): 411-7, 2012 May.
Artigo em Inglês | MEDLINE | ID: mdl-22488572

RESUMO

Four strains of lithotrophic sulfate-reducing bacteria (SRB) have been enriched and isolated from anoxic sediments of hypersaline chloride-sulfate lakes in the Kulunda Steppe (Altai, Russia) at 2 M NaCl and pH 7.5. According to the 16S rRNA gene sequence analysis, the isolates were closely related to each other and belonged to the genus Desulfonatronovibrio, which, so far, included only obligately alkaliphilic members found exclusively in soda lakes. The isolates utilized formate, H(2) and pyruvate as electron donors and sulfate, sulfite and thiosulfate as electron acceptors. In contrast to the described species of the genus Desulfonatronovibrio, the salt lake isolates could only tolerate high pH (up to pH 9.4), while they grow optimally at a neutral pH. They belonged to the moderate halophiles growing between 0.2 and 2 M NaCl with an optimum at 0.5 M. On the basis of their distinct phenotype and phylogeny, the described halophilic SRB are proposed to form a novel species within the genus Desulfonatronovibrio, D. halophilus (type strain HTR1(T) = DSM24312(T) = UNIQEM U802(T)).


Assuntos
Deltaproteobacteria , Genes Bacterianos , Genes de RNAr , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Cloreto de Sódio/metabolismo , Ásia Central , Sequência de Bases , Deltaproteobacteria/classificação , Deltaproteobacteria/genética , Deltaproteobacteria/crescimento & desenvolvimento , Deltaproteobacteria/isolamento & purificação , Concentração de Íons de Hidrogênio , Lagos/microbiologia , Dados de Sequência Molecular , Microbiologia da Água
9.
Extremophiles ; 2012 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-22294481

RESUMO

Anaerobic enrichments at pH 10, with pectin and polygalacturonates as substrates and inoculated with samples of sediments of hypersaline soda lakes from the Kulunda Steppe (Altai, Russia) demonstrated the potential for microbial pectin degradation up to soda-saturating conditions. The enrichments resulted in the isolation of six strains of obligately anaerobic fermentative bacteria, which represented a novel deep lineage within the order Clostridiales loosely associated with the family Lachnospiraceae. The isolates were rod-shaped and formed terminal round endospores. One of the striking features of the novel group is a very narrow substrate spectrum for growth, restricted to galacturonic acid and its polymers (e.g. pectin). Acetate and formate were the final fermentation products. Growth was possible in a pH range from 8 to 10.5, with an optimum at pH 9.5-10, and in a salinity range from 0.2 to 3.5 M Na(+). On the basis of unique phenotypic properties and distinct phylogeny, the pectinolytic isolates are proposed to be assigned to a new genus Natranaerovirga with two species N. hydrolytica (APP2(T)=DSM24176(T)=UNIQEM U806(T)) and N. pectinivora (AP3(T)=DSM24629(T)=UNIQEM U805(T)).

10.
Extremophiles ; 15(6): 691-6, 2011 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-21915708

RESUMO

Anaerobic enrichment with pectin at pH 10 and moderate salinity inoculated with sediments from soda lakes of the Kulunda Steppe (Altai, Russia) resulted in the isolation of a novel member of the Bacteroidetes, strain AP1(T). The cells are long, flexible, Gram-negative rods forming pink carotenoids. The isolate is an obligate anaerobe, fermenting various carbohydrates to acetate and succinate. It can hydrolyze and utilize pectin, xylan, starch, laminarin and pullulan as growth substrates. Growth is possible in a pH range from 8 to 10.5, with an optimum at pH 9.5, and at a salinity range from 0.1 to 2 M Na(+). Phylogenetic analysis based on 16S rRNA sequences placed the isolate into the phylum Bacteroidetes as a separate lineage within the family Marinilabilaceae. On the basis of distinct phenotype and phylogeny, the soda lake isolate AP1(T) is proposed to be assigned in a new genus and species Natronoflexus pectinivorans (=DSM24179(T) = UNIQEM U807(T)).


Assuntos
Bacteroidetes/isolamento & purificação , Fermentação , Anaerobiose , Bacteroidetes/genética , Bacteroidetes/metabolismo , Hidrólise , Microscopia Eletrônica , Pectinas/metabolismo , Filogenia , RNA Ribossômico 16S/genética
11.
Extremophiles ; 15(3): 391-401, 2011 May.
Artigo em Inglês | MEDLINE | ID: mdl-21479878

RESUMO

Soda lake sediments usually contain high concentrations of sulfide indicating active sulfate reduction. Monitoring of sulfate-reducing bacteria (SRB) in soda lakes demonstrated a dominance of two groups of culturable SRB belonging to the order Desulfovibrionales specialized in utilization of inorganic electron donors, such as formate, H(2) and thiosulfate. The most interesting physiological trait of the novel haloalkaliphilic SRB isolates was their ability to grow lithotrophically by dismutation of thiosulfate and sulfite. All isolates were obligately alkaliphilic with a pH optimum at 9.5-10 and moderately salt tolerant. Among the fifteen newly isolated strains, four belonged to the genus Desulfonatronum and the others to the genus Desulfonatronovibrio. None of the isolates were closely related to previously described species of these genera. On the basis of phylogenetic, genotypic and phenotypic characterization of the novel soda lake SRB isolates, two novel species each in the genera Desulfonatronum and Desulfonatronovibrio are proposed.


Assuntos
Desulfovibrio/classificação , Microbiologia da Água , Água/química , Processos Autotróficos , Biodiversidade , Carbonatos/análise , Carbonatos/metabolismo , DNA Bacteriano/isolamento & purificação , Desulfovibrio/genética , Desulfovibrio/crescimento & desenvolvimento , Desulfovibrio/isolamento & purificação , Desulfovibrio/metabolismo , Sedimentos Geológicos/microbiologia , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Oxirredução , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Ribotipagem , Federação Russa , Salinidade , Tolerância ao Sal , Sódio/metabolismo , Sulfetos/análise , Sulfetos/metabolismo , Sulfitos/metabolismo , Tiossulfatos/metabolismo
12.
Int J Syst Evol Microbiol ; 59(Pt 12): 3116-22, 2009 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-19643887

RESUMO

An anaerobic acidophilic, hyperthermophilic archaeon, designated strain 345-15(T), was isolated from an acidic hot spring of Kamchatka (Russia). Cells of strain 345-15(T) were regular or irregular cocci, 1-2 mum in diameter, with flagella. Strain 345-15(T) grew optimally at 80-85 degrees C and pH 3.5-4.0 and fermented a wide range of carbohydrates, including polysaccharides. Acetate, ethanol and lactate were the fermentation products. Growth was stimulated by elemental sulfur and thiosulfate, which were reduced to hydrogen sulfide. The G+C content of the DNA was 54.5 mol%. The 16S rRNA gene sequence analysis indicated that strain 345-15(T) belonged to the genus Acidilobus. The level of DNA-DNA hybridization between strain 345-15(T) and Acidilobus aceticus 1904(T) was 61 %. Thus, strain 345-15(T) was considered as representing a novel species of the genus Acidilobus, with the name Acidilobus saccharovorans sp. nov. (type strain, 345-15(T)=DSM 16705(T)=VKM B-2471(T)), which shared the main morphological and physiological properties of the genus but differed by the presence of flagella and the spectrum of substrates utilized. Phylogenetic analysis showed that the genus Acidilobus, with its species Acidilobus aceticus, Acidilobus saccharovorans sp. nov. and 'Acidilobus sulfurireducens', and the genus Caldisphaera, represented by Caldisphaera lagunensis and 'Caldisphaera draconis', formed a separate cluster that adjoins the cluster formed by the species of the order Desulfurococcales. Members of the Acidilobus-Caldisphaera cluster are thermophilic, organotrophic anaerobic cocci that can be distinguished from all species of the order Desulfurococcales on the basis of acidophily. Based on these considerations, we propose a new family, Acidilobaceae fam. nov., to accommodate the subcluster of hyperthermophiles represented by the genus Acidilobus, a new family, Caldisphaeraceae fam. nov., for the subcluster of extreme thermophiles represented by the genus Caldisphaera, and a new order, Acidilobales ord. nov., to accommodate the two new families.


Assuntos
Crenarchaeota/classificação , Crenarchaeota/isolamento & purificação , Fontes Termais/microbiologia , Anaerobiose , Crenarchaeota/genética , DNA Arqueal/genética , DNA Ribossômico/genética , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S/genética
13.
Extremophiles ; 12(6): 819-27, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18769867

RESUMO

Gram-positive bacteria capable of nitrogen fixation were obtained in microoxic enrichments from soda soils in south-western Siberia, north-eastern Mongolia, and the Lybian desert (Egypt). The same organisms were obtained in anoxic enrichments with glucose from soda lake sediments in the Kulunda Steppe (Altai, Russia) using nitrogen-free alkaline medium of pH 10. The isolates were represented by thin motile rods forming terminal round endospores. They are strictly fermentative saccharolytic anaerobes but tolerate high oxygen concentrations, probably due to a high catalase activity. All of the strains are obligately alkaliphilic and highly salt-tolerant natronophiles (chloride-independent sodaphiles). Growth was possible within a pH range from 7.5 to 10.6, with an optimum at 9.5-10, and within a salt range from 0.2 to 4 M Na(+), with an optimum at 0.5-1.5 M for the different strains. The nitrogenase activity in the whole cells also had an alkaline pH optimum but was much more sensitive to high salt concentrations compared to the growing cells. The isolates formed a compact genetic group with a high level of DNA similarity. Phylogenetic analysis based on 16S-rRNA gene sequences placed the isolates into Bacillus rRNA group 1 as a separate lineage with Amphibacillus tropicus as the nearest relative. In all isolates the key functional nitrogenase gene nifH was detected. A new genus and species, Natronobacillus azotifigens gen. nov., sp. nov., is proposed to accommodate the novel diazotrophic haloalkaliphiles.


Assuntos
Natronobacterium/metabolismo , Concentração de Íons de Hidrogênio , Microscopia Eletrônica , Natronobacterium/classificação , Natronobacterium/genética , Natronobacterium/isolamento & purificação , Fixação de Nitrogênio , Filogenia , RNA Ribossômico 16S/genética
14.
Appl Microbiol Biotechnol ; 81(2): 371-8, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18795282

RESUMO

An enrichment culture from saline soda soils, using acetate as carbon and energy source and 2-phenylpropionitrile as nitrogen source (PPN) at pH 10, resulted in the isolation of strain ANL-alpha CH3. The strain was identified as a representative of the genus Halomonas in the Gammaproteobacteria. The bacterium was capable of PPN utilization as a nitrogen source only, while phenylacetonitrile (PAN) served both as carbon, energy and nitrogen source. This capacity was not described previously for any other haloalkaliphilic bacteria. Apart from the nitriles mentioned above, resting cells of ANL-alpha CH3 also hydrolyzed mandelonitrile, benzonitrile, acrylonitrile, and phenylglycinonitrile, presumably using nitrilase pathway. Neither nitrile hydratase nor amidase activity was detected. The isolate showed a capacity to grow with benzoate and salicylate as carbon and energy source and demonstrated the ability to completely mineralize PAN. These clearly indicated a potential to catabolize aromatic compounds. On the basis of unique phenotype and distinct phylogeny, strain ANL-alpha CH3 is proposed as a novel species of the genus Halomonas--Halomonas nitrilicus sp. nov.


Assuntos
Acetonitrilas/metabolismo , Halomonas/classificação , Halomonas/metabolismo , Microbiologia do Solo , Ácido Acético/metabolismo , Acrilonitrila/metabolismo , Aminoidrolases/metabolismo , Ácido Benzoico/metabolismo , Carbono/metabolismo , Halomonas/genética , Halomonas/isolamento & purificação , Hidroliases/metabolismo , Concentração de Íons de Hidrogênio , Dados de Sequência Molecular , Nitrilas/metabolismo , Nitrogênio/metabolismo , Filogenia , RNA Ribossômico 16S/genética , Salicilatos/metabolismo
15.
Extremophiles ; 12(5): 619-25, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18452025

RESUMO

In this paper we describe denitrification at extremely high salt and pH in sediments from hypersaline alkaline soda lakes and soda soils. Experiments with sediment slurries demonstrated the presence of acetate-utilizing denitrifying populations active at in situ conditions. Anaerobic enrichment cultures at pH 10 and 4 M total Na(+) with acetate as electron donor and nitrate, nitrite and N(2)O as electron acceptors resulted in the dominance of Gammaproteobacteria belonging to the genus Halomonas. Both mixed and pure culture studies identified nitrite and N(2)O reduction as rate-limiting steps in the denitrification process at extremely haloalkaline conditions.


Assuntos
Gammaproteobacteria/metabolismo , Sedimentos Geológicos/microbiologia , Nitratos/metabolismo , Acetatos/metabolismo , Anaerobiose , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Concentração de Íons de Hidrogênio , Resíduos Industriais , Quênia , Dados de Sequência Molecular , Mongólia , Nitritos/metabolismo , Óxidos de Nitrogênio/metabolismo , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Sódio/metabolismo , Microbiologia da Água
16.
Int J Syst Evol Microbiol ; 58(Pt 4): 852-5, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18398181

RESUMO

A moderately thermophilic, anaerobic bacterium (strain SG 508T) was isolated from a hydrothermal vent chimney located at 1 degrees N on the East Pacific Rise at a depth of 2650 m. Cells of strain SG 508T were straight to slightly curved rods, 0.4-0.6 microm in diameter and 2.0-3.0 microm in length. Spore formation was observed only below pH 5.5. The temperature range for growth was 22-60 degrees C, with optimum growth at 50 degrees C. The pH range for growth was 4.0-8.5, with optimum growth at pH 6.0-6.8. Growth of strain SG 508T was observed at NaCl concentrations ranging from 1.0 to 6.0 % (w/v), with optimum growth at 2.5 % (w/v). Substrates utilized by strain SG 508T included casein, peptone, tryptone, yeast extract, beef extract, starch, maltose and glucose. The products of glucose fermentation were ethanol, acetate, H2, formate and CO2. Strain SG 508T was able to reduce elemental sulfur to hydrogen sulfide. The DNA G+C content of strain SG 508T was 30.9 mol%. 16S rRNA gene sequence analysis revealed that the isolated organism belonged to cluster I of the genus Clostridium. On the basis of its physiological properties and data from phylogenetic analyses, strain SG 508T is considered to represent a novel species of the genus Clostridium, for which the name Clostridium tepidiprofundi sp. nov. is proposed. The type strain is SG 508T (=DSM 19306T =VKM B-2459T).


Assuntos
Clostridium/classificação , Clostridium/isolamento & purificação , Composição de Bases , Clostridium/genética , Clostridium/metabolismo , DNA Bacteriano/química , DNA Bacteriano/genética , Fermentação , Genes Bacterianos , Temperatura Alta , Dados de Sequência Molecular , Oceano Pacífico , Filogenia , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Água do Mar/microbiologia , Especificidade da Espécie
17.
Extremophiles ; 12(3): 431-9, 2008 May.
Artigo em Inglês | MEDLINE | ID: mdl-18317684

RESUMO

Anaerobic enrichments with H2 as electron donor and thiosulfate/polysulfide as electron acceptor at pH 10 and 0.6 M total Na+ yielded two non sulfate-reducing representatives of reductive sulfur cycle from soda lake sediments. Strain AHT 1 was isolated with thiosulfate as the electron acceptor from north-eastern Mongolian soda lakes and strain AHT 2-with polysulfide as the electron acceptor from Wadi al Natrun lakes in Egypt. Both isolates represented new phylogenetic lineages: AHT 1-within Clostridiales and AHT 2-within the Deltaproteobacteria. Both bacteria are obligate anaerobes with respiratory metabolism. Both grew chemolithoautotrophically with H2 as the electron donor and can use thiosulfate, elemental sulfur and polysulfide as the electron acceptors. AHT 2 also used nitrate as acceptor, reducing it to ammonia. During thiosulfate reduction, AHT 1 excreted sulfite. dsrAB gene was not found in either strain. Both strains were moderate salt-tolerant (grow up to 2 M total Na+) true alkaliphiles (grow between pH 8.5 and 10.3). On the basis of the phenotypic and phylogenetic data, strains AHT 1 and AHT 2 are proposed as new genera and species Dethiobacter alkaliphilus and Desulfurivibrio alkaliphilus, respectively.


Assuntos
Bactérias/metabolismo , DNA Bacteriano/análise , Deltaproteobacteria/metabolismo , Água Doce/microbiologia , Sulfetos/metabolismo , Tiossulfatos/metabolismo , Adaptação Fisiológica , Amônia/metabolismo , Bactérias/classificação , Bactérias/genética , Bactérias/crescimento & desenvolvimento , Bactérias/isolamento & purificação , Crescimento Quimioautotrófico , Citocromos/metabolismo , Deltaproteobacteria/classificação , Deltaproteobacteria/genética , Deltaproteobacteria/crescimento & desenvolvimento , Deltaproteobacteria/isolamento & purificação , Egito , Ácidos Graxos/metabolismo , Água Doce/química , Concentração de Íons de Hidrogênio , Quênia , Dados de Sequência Molecular , Nitratos/metabolismo , Oxirredução , Fenótipo , Filogenia , RNA Bacteriano , RNA Ribossômico 16S , Salinidade , Fatores de Tempo
18.
Int J Syst Evol Microbiol ; 57(Pt 2): 260-264, 2007 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17267961

RESUMO

An anaerobic, moderately thermoacidophilic bacterium, strain 761-119T, was isolated from an acidic hot spring in the Orange Field of the Uzon Caldera (Kamchatka, far-eastern Russia). Cells were spore-forming, Gram-positive rods, possessing one polar flagellum. Growth of strain 761-119T was observed between 37 and 68 degrees C and in the pH(20 degrees C) range 3.2-7.1. No growth was observed within 5 days of incubation at or below 35 degrees C and at or above 70 degrees C, as well as at or below pH(20 degrees C) 2.8 and at or above pH(20 degrees C) 7.5. The optimal temperature and pH(20 degrees C) for growth were 55 degrees C and pH(20 degrees C) 5.7, respectively. A wide range of carbohydrates and polysaccharides were fermented, as well as peptides and proteinaceous substrates. The main products of glucose fermentation were acetate, ethanol, lactate, H2 and CO2. The DNA G+C content was 34 (+/-0.5) mol%. 16S rRNA gene sequence analysis indicated that strain 761-119T belonged to the genus Thermoanaerobacterium. The level of 16S rRNA gene sequence similarity with other Thermoanaerobacterium species was 86.5-97.8 %, with the only moderately acidophilic member of this genus, Thermoanaerobacterium aotearoense, being one of its closest relatives. DNA-DNA hybridization with T. aotearoense showed 33 % relatedness. Thus, morphological (one polar flagellum) and physiological characteristics (lower pH limit of growth at pH(20 degrees C) 3.2 compared with T. aotearoense) and 16S rRNA gene sequence analyses revealed that strain 761-119T represents a novel species in the genus Thermoanaerobacterium, for which the name Thermoanaerobacterium aciditolerans sp. nov. is proposed, with the type strain 761-119T (=DSM 16487T=VKM B-2363T).


Assuntos
Fontes Termais/microbiologia , Thermoanaerobacterium/classificação , Thermoanaerobacterium/isolamento & purificação , Ácido Acético/metabolismo , Anaerobiose , Técnicas de Tipagem Bacteriana , Composição de Bases , Dióxido de Carbono/metabolismo , Citrus sinensis , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Etanol/metabolismo , Flagelos , Genes de RNAr/genética , Hidrogênio/metabolismo , Concentração de Íons de Hidrogênio , Ácido Láctico/metabolismo , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Peptídeos/metabolismo , Filogenia , Polissacarídeos/metabolismo , Proteínas/metabolismo , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Federação Russa , Temperatura , Thermoanaerobacterium/citologia , Thermoanaerobacterium/fisiologia , Microbiologia da Água
19.
Int J Syst Evol Microbiol ; 56(Pt 2): 369-372, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16449442

RESUMO

A moderately thermophilic, anaerobic bacterium (strain SB91T) was isolated from a freshwater hot spring at Barguzin Valley, Buryatiya, Russia. Cells of strain SB91T were straight to slightly curved rods, 0.5-0.6 microm in diameter and 3.0-7.0 mum in length. Formation of endospores was not observed. The temperature range for growth was 26-62 degrees C, with an optimum at 50 degrees C. The pH range for growth was 5.5-9.5, with an optimum at pH 7.5-8.0. The substrates utilized by strain SB91T in the presence of 9,10-anthraquinone 2,6-disulfonate included peptone, tryptone, Casamino acids, yeast extract, beef extract, casein hydrolysate, alanine plus glycine, alanine plus proline, L-valine and n-propanol. Carbohydrates were not utilized. Strain SB91T reduced amorphous Fe(III) oxide, Fe(III) citrate, Fe(III) EDTA or Fe(III) nitrilotriacetate with peptone, L-valine or n-propanol as an electron donor. Strain SB91T reduced 9,10-anthraquinone 2,6-disulfonate, thiosulfate, elemental sulfur, fumarate and selenite. Strain SB91T survived after exposure to gamma-radiation at a dose of 5.4 kGy. The G+C content of the DNA of strain SB91T was 33 mol%. Analysis of the 16S rRNA gene sequence revealed that the isolated organism belonged to cluster XII of the clostridia. On the basis of its physiological properties and the results of phylogenetic analyses, it is proposed that strain SB91T represents the sole species of a novel genus, Tepidimicrobium; the name Tepidimicrobium ferriphilum gen. nov., sp. nov. is proposed, with strain SB91T (=DSM 16624T=VKM B-2348T) as the type strain.


Assuntos
Bactérias Anaeróbias/classificação , Compostos Férricos/metabolismo , Bacilos Gram-Positivos Asporogênicos Irregulares/classificação , Fontes Termais/microbiologia , Temperatura Alta , Bactérias Anaeróbias/genética , Bactérias Anaeróbias/isolamento & purificação , Bactérias Anaeróbias/fisiologia , Técnicas de Tipagem Bacteriana , DNA Bacteriano/análise , DNA Ribossômico/análise , Genes de RNAr , Bacilos Gram-Positivos Asporogênicos Irregulares/genética , Bacilos Gram-Positivos Asporogênicos Irregulares/isolamento & purificação , Bacilos Gram-Positivos Asporogênicos Irregulares/fisiologia , Ferro/metabolismo , Dados de Sequência Molecular , Oxirredução , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Federação Russa , Análise de Sequência de DNA
20.
Int J Syst Evol Microbiol ; 56(Pt 2): 379-388, 2006 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-16449444

RESUMO

Anaerobic enrichments with acetate as electron donor and nitrate as electron acceptor at 4 M NaCl from inland, hypersaline lake sediments from Central Asia resulted in the isolation of several extremely halophilic bacteria that comprised two subgroups, most with vibrio-shaped cells and a single strain with rod-shaped cells. Members of both subgroups were extremely halophilic, with growth occurring in 2-5 M NaCl with an optimum at 2-3 M. 16S rRNA gene sequence analysis showed a close affiliation of the new isolates with Pseudomonas halophila DSM 3050 in the Gammaproteobacteria. However, phenotypic comparison of the denitrifying halophiles with the original description of P. halophila demonstrated that they were more similar to another bacterium isolated from the same source at the same time, the extremely halophilic Halovibrio variabilis, which has since been reclassified as Halomonas variabilis (DSM 3051). Direct cross-comparison showed that the characteristics of these two halophilic bacteria do not correspond with the original descriptions associated with these names and DSM numbers. While it is desirable that this problem be solved, in connection with the present investigations, this is a matter that can only be solved by a Request for an Opinion. On the basis of the phenotypic and genetic comparison of these isolates, it is proposed that the new denitrifying vibrio-shaped isolates represent a novel species, Halovibrio denitrificans sp. nov. (type strain HGD 3T=DSM 15503T=UNIQEM U232T) and that the rod-shaped isolate represents a novel genus and species, Halospina denitrificans gen. nov., sp. nov. (type strain HGD 1-3T=DSM 15505T=UNIQEM U233T).


Assuntos
Água Doce/microbiologia , Gammaproteobacteria/classificação , Sedimentos Geológicos/microbiologia , Halomonas/classificação , Nitratos/metabolismo , Cloreto de Sódio , Técnicas de Tipagem Bacteriana , DNA Bacteriano/análise , DNA Ribossômico/análise , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Gammaproteobacteria/fisiologia , Genes de RNAr , Halomonas/genética , Halomonas/isolamento & purificação , Halomonas/fisiologia , Dados de Sequência Molecular , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Especificidade da Espécie
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