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1.
J Neurochem ; 78(3): 611-8, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11483664

RESUMO

Immunoelectron microscopy analysis of brain tissue sections and rat-specific sandwich ELISA allowed the localization of interleukin-1beta (IL-1beta) immunoreactivity in the mitochondria and cytosol of neocortical tissue preparations from the brain of naive, untreated, rats and rats receiving a single daily injection into one lateral cerebral ventricle (i.c.v.) of bovine serum albumin (BSA; 100 ng/day) for seven consecutive days. Interestingly, seven days i.c.v. treatment with the HIV-1 coat protein gp120 (100 ng/day) enhances IL-1beta immunoreactivity in the cellular fractions studied. Elevation of mitochondrial immunoreactive IL-1beta levels seems to originate from the conversion operated by the interleukin converting enzyme (ICE) of mitochondrial pro-IL-1beta; in fact, IL-1beta increases reported in the ELISA experiments were paralleled by a decrease of the mitochondrial pro-IL-1beta 31-kDa band in conjunction with enhanced expression of the p20 component of activated ICE. In conclusion, the present results demonstrate that gp120-enhanced neocortical expression of IL-1beta originates, at least in part, from in situ cleavage of mitochondrial pro-IL-1beta and suggest that this, together with the central role of the mitochondrion in the expression of programmed cell death, may be important for apoptosis induced by the viral coat protein in the brain of rats.


Assuntos
Córtex Cerebral/metabolismo , Proteína gp120 do Envelope de HIV/metabolismo , HIV-1/metabolismo , Interleucina-1/metabolismo , Mitocôndrias/metabolismo , Neurônios/metabolismo , Animais , Química Encefálica , Caspase 1/metabolismo , Fracionamento Celular , Córtex Cerebral/citologia , Proteína gp120 do Envelope de HIV/química , Humanos , Immunoblotting , Interleucina-1/química , Masculino , Mitocôndrias/química , Neurônios/ultraestrutura , Precursores de Proteínas/química , Precursores de Proteínas/metabolismo , Ratos , Ratos Wistar , Soroalbumina Bovina/administração & dosagem
2.
Eur J Biochem ; 268(16): 4468-76, 2001 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-11502207

RESUMO

A new approach was developed to overproduce 15N-enriched yeast iso-1-cytochrome c in the periplasm of Escherichia coli in order to perform a study of the motions in the ms-micros time scale on the oxidized and reduced forms through rotating frame 15N relaxation rates and proton/deuterium exchange studies. It is confirmed that the reduced protein is rather rigid whereas the oxidized species is more flexible. The regions of the protein that display increased internal mobility upon oxidation are easily identified by the number of residues experiencing conformational equilibria and by their exchange rates. These data complement the information already available in the literature and provide a comprehensive picture of the mobility in the protein. In particular, oxidation mobilizes the loop containing Met80 and, through specific contacts, affects the mobility of helix 3 and possibly of helix 5, and of a section of protein connecting the heme propionates to helix 2. The relevance of internal motions to molecular recognition and to the early steps of the unfolding process of the oxidized species is also discussed. In agreement with the reported data, subnanosecond mobility is found to be less informative than the ms-micros with respect to redox dependent properties.


Assuntos
Grupo dos Citocromos c/química , Mitocôndrias/enzimologia , Saccharomyces cerevisiae/enzimologia , Espectroscopia de Ressonância Magnética , Oxirredução , Conformação Proteica , Estrutura Secundária de Proteína
3.
J Biol Inorg Chem ; 6(5-6): 490-503, 2001 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-11472013

RESUMO

A derivative of rat microsomal cytochrome b5, obtained by substitution of the native heme moiety with protoporphyrin IX dimethyl ester, has been characterized by 1H and 15N NMR spectroscopy. Besides the two usual A and B forms, which depend on the orientation of the heme in the prostethic group cavity, two other minor forms have been detected which presumably indicate different conformations of the vinyl side chains. The shifts of the heme methyls, as well as the directions of the rhombic axes of the magnetic susceptibility tensor, indicate a small difference in the orientation of the imidazole planes of the histidine axial ligands. The solution structure was determined by using 1,303 meaningful NOEs and 241 pseudocontact shifts, the latter being derived from the native reduced protein. A family of 40 energy-minimized conformers was obtained with average RMSD of 0.56+/-0.09 A and 1.04+/-0.12 A for backbone and heavy atoms, respectively, and distance and pseudocontact shift penalty functions of 0.50+/-0.07 A2 and 0.51+/-0.02 ppm2. The structure shows some changes around the cavity and in particular a movement of the 60-70 backbone segment owing to the absence of two hydrogen bonds between the Ser64 backbone NH and side-chain OH and the carboxylate oxygen of propionate-7, present in the native protein. The analysis of the NMR spectra in the presence of unfolding agents indicates that this protein is less stable than the native form. The decrease in stability may be the result of the loss of the two hydrogen bonds connecting propionate-7 to Ser64 in the native protein. The available data on the reduction potential and the electron transfer rates are discussed on the basis of the present structural data.


Assuntos
Citocromos b5/química , Metaloporfirinas/química , Sequência de Aminoácidos , Citocromos b5/metabolismo , Estabilidade Enzimática , Guanidina/química , Heme/química , Espectroscopia de Ressonância Magnética , Magnetismo , Metaloporfirinas/metabolismo , Dados de Sequência Molecular , Conformação Proteica , Dobramento de Proteína
4.
J Biol Inorg Chem ; 5(6): 761-4, 2000 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-11129003

RESUMO

The origin of the recently reported chemical shift changes of backbone amide nitrogens of redox proteins upon redox state changes has been investigated. These effects are particularly marked in cytochromes and are clearly present after correction for pseudocontact shifts in the oxidized form (Boyd J, Dobson CM, Morar AS, Williams RJP, Pielak GJ (1999) J Am Chem Soc 121:9247-9248; Guiles RD, Basus VJ, Sarma S, Malpure S, Fox KM, Kuntz ID, Waskell L (1993) Biochemistry 32:8329-8340). 15N-HSQC experiments have been performed on both oxidized and reduced forms of cytochrome b5 in the absence and in the presence of 2 M guanidinium chloride (GdmCl). GdmCl in this concentration is known to sizably alter the structure of the oxidized form of the protein and, in particular, to perturb the hydrogen bonding network. However, the perturbation of the 15N-NMR chemical shift changes is minor compared to the changes occurring upon reduction. It is concluded that changes in hydrogen bonding upon reduction must be modest and cannot account for the observed chemical shift effects. Alternative explanations should thus be looked for.


Assuntos
Citocromos b5/química , Guanidina/química , Animais , Microssomos/enzimologia , Isótopos de Nitrogênio , Oxirredução , Desnaturação Proteica , Ratos
5.
Biochem Biophys Res Commun ; 274(3): 664-9, 2000 Aug 11.
Artigo em Inglês | MEDLINE | ID: mdl-10924334

RESUMO

The effects of a single dose of the HIV-1 coat protein gp120 given into one lateral cerebral ventricle (i.c.v.) on the expression of cyclooxygenase type 2 (COX-2) and PGE(2) levels have been studied using Western blotting and ELISA techniques applied to brain tissue extracts obtained from the neocortex of individual rats, one of the regions of the central nervous system where the viral protein causes apoptosis. The results demonstrate that COX-2 expression is almost doubled 6 h after a single dose (100 ng) of gp120 and this is paralleled by a statistically significant elevation of PGE(2). Enhanced COX-2 expression is implicated in the mechanisms of apoptosis evoked by gp120 because the latter is prevented by NS398 (10 mg/kg i.p.), a selective inhibitor of COX-2 activity. Protection is also afforded by NMDA receptor antagonists, such as MK801 (0.3 mg/kg i.p.) and CGP040116 (10 mg/kg i.p.), and by the free radical scavenger, U-74389G (10 mg/kg i.p.), supporting a glutamate-mediated, excitotoxic, mechanism of apoptotic death induced by gp120. These data together with the observation that MK801 failed to prevent gp120-enhanced COX-2 expression indicate that products of the arachidonic cascade may be responsible for elevation of synaptic glutamate leading neocortical cells to oxidative stress and excitotoxic apoptosis.


Assuntos
Apoptose/efeitos dos fármacos , Proteína gp120 do Envelope de HIV/farmacologia , Isoenzimas/biossíntese , Neocórtex/metabolismo , Neocórtex/patologia , Fármacos Neuroprotetores/farmacologia , Pregnatrienos/farmacologia , Prostaglandina-Endoperóxido Sintases/biossíntese , Receptores de N-Metil-D-Aspartato/antagonistas & inibidores , Animais , Ciclo-Oxigenase 2 , Inibidores de Ciclo-Oxigenase 2 , Inibidores de Ciclo-Oxigenase/farmacologia , Maleato de Dizocilpina/farmacologia , Antagonismo de Drogas , Masculino , Nitrobenzenos/farmacologia , Ratos , Ratos Wistar , Transdução de Sinais/efeitos dos fármacos , Sulfonamidas/farmacologia
6.
Eur J Biochem ; 266(2): 634-43, 1999 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-10561607

RESUMO

The solution structure via 1H NMR of the fully reduced form of cytochrome c7 has been obtained. The protein sample was kept reduced by addition of catalytic amounts of Desulfovibrio gigas iron hydrogenase in H2 atmosphere after it had been checked that the presence of the hydrogenase did not affect the NMR spectrum. A final family of 35 conformers with rmsd values with respect to the mean structure of 8.7 +/- 1.5 nm and 12.4 +/- 1.3 nm for the backbone and heavy atoms, respectively, was obtained. A highly disordered loop involving residues 54-61 is present. If this loop is ignored, the rmsd values are 6.2 +/- 1.1 nm and 10.2 +/- 1.0 nm for the backbone and heavy atoms, respectively, which represent a reasonable resolution. The structure was analyzed and compared with the already available structure of the fully oxidized protein. Within the indetermination of the two solution structures, the result for the two redox forms is quite similar, confirming the special structural features of the three-heme cluster. A useful comparison can be made with the available crystal structures of cytochromes c3, which appear to be highly homologous except for the presence of a further heme. Finally, an analysis of the factors affecting the reduction potentials of the heme irons was performed, revealing the importance of net charges in differentiating the reduction potential when the other parameters are kept constant.


Assuntos
Grupo dos Citocromos c/química , Deltaproteobacteria/metabolismo , Sequência de Aminoácidos , Cristalografia , Cristalografia por Raios X , Grupo dos Citocromos c/metabolismo , Heme/química , Ligantes , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dados de Sequência Molecular , Oxirredução , Oxigênio/metabolismo , Ligação Proteica , Conformação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Prótons , Termodinâmica
7.
J Biol Inorg Chem ; 4(1): 21-31, 1999 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-10499099

RESUMO

In the frame of a broad study on the structural differences between the two redox forms of cytochromes to be related to the electron transfer process, the NMR solution structure of horse heart cytochrome c in the reduced form has been determined. The structural data obtained in the present work are compared to those already available in the literature on the same protein and the presence of conformational differences is discussed in the light of the experimental method employed for the structure determination. Redox-state dependent changes are analyzed and in particular they are related to the role of propionate-7 of the heme. Also some hydrogen bonds are changed upon reduction of the heme iron. A substantial similarity is observed for the backbone fold, independently of the oxidation state. At variance, some meaningful differences are observed in the orientation of a few side chains. These changes are related to those found in the case of the highly homologous cytochrome c from Saccharomyces cerevisiae. The exchangeability of the NH protons has been investigated and found to be smaller than in the case of the oxidized protein. We think that this is a characteristic of reduced cytochromes and that mobility is a medium for molecular recognition in vivo.


Assuntos
Grupo dos Citocromos c/química , Grupo dos Citocromos c/metabolismo , Sequência de Aminoácidos , Animais , Cavalos , Espectroscopia de Ressonância Magnética/métodos , Modelos Moleculares , Dados de Sequência Molecular , Oxirredução , Propionatos/química , Propionatos/metabolismo , Conformação Proteica , Soluções
8.
Eur J Biochem ; 256(2): 261-70, 1998 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-9760163

RESUMO

The solution structure of Desulfuromonas acetoxidans cytochrome c7 has been refined by using 1H-NMR spectra recorded at 800 MHz and by using pseudocontact shifts in the final energy minimization procedure. The protein, composed of 68 amino acids, contains three paramagnetic heme moieties, each with one unpaired electron. The largely distributed paramagnetism broadens the lines in several protein parts. The structure is now relatively well resolved all over the backbone by the use of 1315 meaningful NOEs and 90 pseudocontact shifts. The statistical analysis of the structure indicates its satisfactory quality. The protein-fold is quite similar to that of the analogous four-heme cytochromes c3 for those parts which can be considered homologous. The solvent accessibility and the electrostatic potential surfaces surrounding the three hemes have been analyzed in terms of their reduction potentials. The resulting magnetic susceptibility anisotropy data obtained from pseudocontact shifts are analyzed in terms of structural data.


Assuntos
Proteínas de Bactérias/química , Grupo dos Citocromos c/química , Citocromos/química , Hemeproteínas/química , Sequência de Aminoácidos , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Secundária de Proteína , Software , Eletricidade Estática
9.
Eur J Biochem ; 256(2): 271-8, 1998 Sep 01.
Artigo em Inglês | MEDLINE | ID: mdl-9760164

RESUMO

Horse heart cytochrome c at pH 7 and low ionic strength is present as two conformers, as evidenced by 1H-NMR spectroscopy. The two structures have been calculated using NOE and pseudocontact shift constraints. They have the same folding patterns and are essentially equal, within the rmsd of the families. The two average structures have rmsd values of 0.049 nm and 0.093 nm for the backbone and the heavy atoms, respectively. Such a difference has been analyzed through a detailed analysis of the NOEs. It appears that the species at low ionic strength differs from the species present at high ionic strength by the displacement of some external residues, such as Gln16, Ile81 and Glu90. Other changes are monitored by the chemical shifts but they cannot be quantified at the present level of resolution. Ionic-strength-dependent structural rearrangements may be relevant with respect to the problem of molecular recognition.


Assuntos
Grupo dos Citocromos c/química , Conformação Proteica , Algoritmos , Animais , Cavalos , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Miocárdio/química , Concentração Osmolar , Fosfatos/metabolismo , Dobramento de Proteína
10.
Eur J Biochem ; 249(3): 716-23, 1997 Nov 01.
Artigo em Inglês | MEDLINE | ID: mdl-9395318

RESUMO

Molecular dynamics calculations have been performed over long trajectories with the inclusion of explicit solvent molecules on the reduced and the oxidized states of yeast iso-1-cytochrome c. The resulting structures have been analyzed and compared both in terms of structural properties and dynamical behavior. The structure of the buried water molecules around the heme has been also analyzed for the two oxidation states and compared with the experimental observations on the X-ray and the solution NMR structures. From the overall analysis we learn that, as also observed experimentally through NMR, no significant differences are present between the structures of the two oxidation states beside the arrangement of a few side chains. Also the internal mobility is similar for the two oxidation states, even if interesting differences are observed for some residues, as for Tyr67, a residue present at the heme site. The location and the mobility of the ordered water molecules, observed in solution by NMR, are completely reproduced in the molecular dynamics simulations, which have been able to predict the different displacements of the catalytically relevant water molecule WAT166, similar to those observed in solution for the two oxidation states, at variance with that observed in the starting crystallographic structures. The relevance of these findings with respect to the prediction of structural and dynamical properties is discussed.


Assuntos
Grupo dos Citocromos c/química , Citocromos c , Proteínas Fúngicas/química , Proteínas de Saccharomyces cerevisiae , Simulação por Computador , Cristalografia por Raios X , Heme/química , Ligação de Hidrogênio , Ferro/química , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Oxirredução , Conformação Proteica , Estrutura Terciária de Proteína , Software , Solubilidade , Água/química
11.
Proteins ; 29(1): 68-76, 1997 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-9294867

RESUMO

The pseudocontact shifts of NMR signals, which arise from the magnetic susceptibility anisotropy of paramagnetic molecules, have been used as structural constraints under the form of a pseudopotential in the SANDER module of the AMBER 4.1 molecular dynamics software package. With this procedure, restrained energy minimization (REM) and restrained molecular dynamics (RMD) calculations can be performed on structural models by using pseudocontact shifts. The structure of the cyanide adduct of the Met80Ala mutant of the yeast iso-1-cytochrome c has been used for successfully testing the calculations. For this protein, a family of structures is available, which was obtained by using NOE and pseudocontact shifts as constraints in a distance geometry program. The structures obtained by REM and RMD calculations with the inclusion of pseudocontact shifts are analyzed.


Assuntos
Espectroscopia de Ressonância Magnética/métodos , Metaloproteínas/química , Termodinâmica , Algoritmos , Anisotropia , Simulação por Computador , Metodologias Computacionais , Computação Matemática , Modelos Moleculares , Software , Soluções
12.
Biochemistry ; 36(32): 9867-77, 1997 Aug 12.
Artigo em Inglês | MEDLINE | ID: mdl-9245419

RESUMO

The solution structure of oxidized horse heart cytochrome c was obtained at pH 7.0 in 100 mM phosphate buffer from 2278 NOEs and 241 pseudocontact shift constraints. The final structure was refined through restrained energy minimization. A 35-member family, with RMSD values with respect to the average structure of 0.70 +/- 0.11 A and 1.21 +/- 0.14 A for the backbone and all heavy atoms, respectively, and with an average penalty function of 130 +/- 4.0 kJ/mol and 84 +/- 3.7 kJ/mol for NOE and pseudocontact shift constraints, respectively (corresponding to a target function of 0.9 A2 and 0.2 A2), was obtained. The solution structure is somewhat different from that recently reported (Qi et al., 1996) and appears to be similar to the X-ray structure of the same oxidation state (Bushnell et al., 1990). A noticeable difference is a rotation of 17 +/- 8 degrees of the imidazole plane between solid and solution structure. Detailed and accurate structural determinations are important within the frame of the current debate of the structural rearrangements occurring upon oxidation or reduction. From the obtained magnetic susceptibility tensor a separation of the hyperfine shifts into their contact and pseudocontact contributions is derived and compared to that of the analogous isoenzyme from S. cerevisiae and to previous results.


Assuntos
Grupo dos Citocromos c/química , Miocárdio/enzimologia , Sequência de Aminoácidos , Animais , Cristalografia por Raios X , Grupo dos Citocromos c/metabolismo , Cavalos , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Oxirredução , Estrutura Secundária de Proteína , Soluções
13.
Biochemistry ; 36(29): 8992-9001, 1997 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-9220987

RESUMO

The solution structure of oxidized Saccharomycescerevisiae Cys102Ser iso-1-cytochromechas been determined using 1361 meaningful NOEs (of 1676 total) after extending the published proton assignment [Gao, Y., et al. (1990) Biochemistry 29, 6994-7003] to 77% of all proton resonances. The NOE patterns indicate that secondary structure elements are maintained upon oxidation in solution with respect to the solid state and solution structures of the reduced species. Constraints derived from the pseudocontact shifts [diamagnetic reference shift values are those of the reduced protein [Baistrocchi, P., et al. (1996) Biochemistry 35, 13788-13796]] were used in the final stages of structure calculations. After restrained energy minimization with constraints from NOEs and pseudocontact shifts, a family of 20 structures with rmsd values of 0.58 +/- 0.08 and 1.05 +/- 0.10 A (relative to the average structure) for the backbone and all heavy atoms, respectively, was obtained. The solution structure is compared with the crystal structure and the structures of related systems. Twenty-six amide protons were detected in the NMR spectrum 6 days after the oxidized lyophilized protein was dissolved in D2O (pH 7.0 and 303 K); in an analogous experiment, 47 protons were observed in the spectrum of the reduced protein. The decrease in the number of nonexchanging amide protons, which mainly are found in the loop regions 14-26 and 75-82, confirms the greater flexibility of the structure of oxidized cytochrome c in solution. Our finding of increased solvent accessibility in these loop regions is consistent with proposals that an early step in unfolding the oxidized protein is the opening of the 70-85 loop coupled with dissociation of the Met80-iron bond.


Assuntos
Grupo dos Citocromos c/química , Citocromos c , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/enzimologia , Sequência de Aminoácidos , Espectroscopia de Ressonância Magnética , Modelos Químicos , Modelos Moleculares , Dados de Sequência Molecular , Oxirredução , Estrutura Secundária de Proteína , Software , Soluções
14.
Proc Natl Acad Sci U S A ; 93(25): 14396-400, 1996 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-8962062

RESUMO

The solution structure of the three-heme electron transfer protein cytochrome c7 from Desulfuromonas acetoxidans is reported. The determination of the structure is obtained through NMR spectroscopy on the fully oxidized, paramagnetic form. The richness of structural motifs and the presence of three prosthetic groups in a protein of 68 residues is discussed in comparison with the four-heme cytochromes c3 already characterized through x-ray crystallography. In particular, the orientation of the three hemes present in cytochrome c7 is similar to that of three out of four hemes of cytochromes c3. The reduction potentials of the individual hemes, which have been obtained through the sequence-specific assignment of the heme resonances, are discussed with respect to the properties of the protein matrix. This information is relevant for any attempt to understand the electron transfer pathway.


Assuntos
Grupo dos Citocromos c/metabolismo , Desulfovibrio/metabolismo , Sequência de Aminoácidos , Grupo dos Citocromos c/química , Desulfovibrio/química , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Oxirredução , Conformação Proteica
15.
Biochemistry ; 35(43): 13788-96, 1996 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-8901521

RESUMO

Two-dimensional 1H NMR spectra of Saccharomyces cerevisiae reduced iso-1-cytochrome c have been used to confirm and slightly extend the assignment available in the literature. 1702 NOESY cross-peaks have been assigned, and their intensities have been measured. Through the program DIANA and related protocols (Güntert, 1992), a solution structure has been obtained by using 1442 meaningful NOEs and 13 hydrogen-bond constraints. The RMSD values with respect to the mean structure for the backbone and all heavy atoms for a family of 20 structures are 0.61 +/- 0.09 and 0.98 +/- 0.09 A, the average target function value being as small as 0.57 A2. The larger number of slowly exchanging amide NHs observed in this system compared to that observed in the cyanide derivative of oxidized Ala 80 cytochrome c suggests that the oxidized form is much more flexible and that the backbone protons are more solvent accessible. Comparison of the present structure with the crystal structures of reduced yeast cytochrome c and of the complex between cytochrome c peroxidase and oxidized yeast cytochrome c reveals substantial similarity among the backbone conformations but differences in the residues located in the region of protein-protein interaction. Interestingly, in solution the peripheral residues involved in the interaction with cytochrome c peroxidase are on average closer to the position found in the crystal structure of the complex than to the solid state structure of the isolated reduced from.


Assuntos
Grupo dos Citocromos c/química , Citocromos c , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/química , Sequência de Aminoácidos , Cristalografia por Raios X , Citocromo-c Peroxidase/metabolismo , Ligação de Hidrogênio , Ferro/metabolismo , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dados de Sequência Molecular , Mutação/genética , Oxirredução , Conformação Proteica , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína
16.
Biochemistry ; 34(42): 13895-905, 1995 Oct 24.
Artigo em Inglês | MEDLINE | ID: mdl-7577984

RESUMO

Electronic absorption, MCD, and 1H NMR spectroscopy have been used to characterize the structures and linkage relationships of three active site states, LS1, HS, and LS2, of the Trp51Ala variant of yeast cytochrome c peroxidase (CcP) in the Fe(III) state. In addition, the binding of three substrates (styrene, catechol, and guaiacol) to the Fe(III) variant has been studied by 1H NMR spectroscopy, and the paramagnetically shifted resonances of the cyanide adduct of the variant have been assigned. The heme iron is hexacoordinated in all three pH-dependent states of the enzyme. LS1, the dominant acidic species, exhibits electronic and MCD spectra indicative of low-spin, bis-histidine coordination environment for the heme iron. The HS form, which dominates at intermediate pH, exhibits electronic, MCD, and 1H NMR spectra characteristic of high-spin heme Fe(III) with axial histidyl and water ligands. The LS2 species exhibits spectroscopic properties indicative of a bis-histidine, low-spin Fe(III) derivative. The equilibrium constants for interconversion of these forms of the variant enzyme are highly dependent on ionic strength, specific anions, and temperature of the solution, with the HS form stabilized relative to the other forms in the presence of several noncoordinating, anionic species. Aromatic substrates such as styrene, catechol, and guaiacol affect the chemical shifts of the heme substituents of the HS species but not of the LS2 species. Based on these results, a model is proposed that accounts to a large extent for the electrostatic origin of the three forms of the active site of the Trp51Ala variant and the mechanisms by which they are differentially stabilized in solution.


Assuntos
Citocromo-c Peroxidase/química , Saccharomyces cerevisiae/enzimologia , Ânions/metabolismo , Sítios de Ligação , Catecóis/metabolismo , Dicroísmo Circular , Cianetos/metabolismo , Citocromo-c Peroxidase/genética , Citocromo-c Peroxidase/metabolismo , Eletrólitos/farmacologia , Compostos Férricos/metabolismo , Guaiacol/metabolismo , Heme/química , Ligação de Hidrogênio , Concentração de Íons de Hidrogênio , Espectroscopia de Ressonância Magnética , Estrutura Molecular , Mutagênese Sítio-Dirigida/genética , Espectrofotometria , Estireno , Estirenos/metabolismo
17.
Biochemistry ; 34(36): 11385-98, 1995 Sep 12.
Artigo em Inglês | MEDLINE | ID: mdl-7547866

RESUMO

The 1H NMR spectrum of the the cyanide adduct of a triply mutated Saccharomyces cerevisiae iso-1-cytochrome c (His39Gln/Met80Ala/Cys102Ser) in the oxidized form has been assigned through 1D NOE and 2D COSY, TOCSY, NOESY, and NOE-NOESY experiments; 562 protons out of a total of 683 have been assigned. The solution structure, the first of a paramagnetic heme protein, was determined using 1426 meaningful NOE constraints out of a total of 1842 measured NOEs. The RMSD values at the stage of restrained energy minimization of 17 structures obtained from distance geometry calculations are 0.68 +/- 0.11 and 1.32 +/- 0.14 A for the backbone and all heavy atoms, respectively. The quality, in terms of RMSD, of the present structure is the same as that obtained for the solution structure of the diamagnetic horse heart ferrocytochrome c [Qi, P. X., et al. (1994) Biochemistry 33, 6408-6419]. The secondary structure elements and the overall folding in the variant are observed to be the same as those of the wild-type protein for which the X-ray structure is available. However, the replacement of the methionine axial ligand with an alanine residue creates a ligand-binding "distal cavity". The properties of the distal cavity seen in this solution structure are compared to those of other heme proteins.


Assuntos
Alanina/química , Cianetos/química , Grupo dos Citocromos c/química , Citocromos c , Heme/química , Metionina/química , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/enzimologia , Sequência de Aminoácidos , Animais , Cristalografia por Raios X , Cavalos , Ligantes , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Miocárdio/enzimologia , Conformação Proteica , Estrutura Secundária de Proteína , Soluções
18.
Chem Biol ; 2(6): 377-83, 1995 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-9383439

RESUMO

BACKGROUND: Cytochrome c has five distinct pH-dependent conformational states, including two alkaline forms of unknown structure. It is believed that in both of the alkaline forms a Lys residue is ligated to the heme, but the identity of the Lys residue is different. Exchange between these forms would require extensive structural rearrangement. Mutation of the heme axial ligand (Met80) to Ala in Saccharomyces cerevisiae iso-1-cytochrome c yields a protein (Ala80cyt c) capable of binding exogenous ligands such as dioxygen and cyanide. We have analyzed the 1H NMR spectra of this mutant at various pH values in the hope of gaining insight into the structure of the acidic and alkaline forms of native cytochrome c. RESULTS: The pH dependence of the 1H NMR spectrum of ferriAla80cyt c is consistent with the high-spin/low-spin transition (pKa = 6.5) observed by absorption spectroscopy. The T1 values for the low-spin form are consistent with OH ligation, as inferred previously from absorption and electron paramagnetic resonance spectroscopic results. The pH-dependent equilibria of ferriAla80cyt c differ from those of the wild-type protein. Both Ala80 and wild-type ferricyt c appear to have the same iron coordination at low pH (approximately equal to 2), while only one alkaline form of Ala80cyt c (versus two for WTcyt c) was detected. CONCLUSIONS: The differences between the pH dependence of the 1H NMR spectra of Ala80cyt c and those of the wild-type protein demonstrate that the heme axial ligands influence the relative energies of the conformational states of cytochrome c. The results are consistent with the notion that a large rearrangement is required to switch between the two alkaline forms.


Assuntos
Grupo dos Citocromos c/metabolismo , Metionina/metabolismo , Saccharomyces cerevisiae/enzimologia , Grupo dos Citocromos c/química , Espectroscopia de Ressonância de Spin Eletrônica , Concentração de Íons de Hidrogênio , Ferro/química , Espectroscopia de Ressonância Magnética , Metionina/química , Conformação Proteica
19.
Biochemistry ; 33(25): 7819-29, 1994 Jun 28.
Artigo em Inglês | MEDLINE | ID: mdl-8011646

RESUMO

Asp235 in yeast cytochrome c peroxidase forms a hydrogen bond with His175, the proximal histidyl residue, that has been suggested to be important in determining the electronic properties of the heme iron and that may be involved in stabilizing the higher oxidation states of the peroxidase that form transiently during catalysis. The current study employs 1H and 15N-NMR spectroscopy to study the electronic properties of and the effects of pH on the active site of the Asp235Ala variant. This variant exhibits three spectroscopic species between pH 5 and 9: a high-spin species that forms at low pH and two low-spin species that form successively at higher pH. Nevertheless, the activity of the variant exhibits a pH dependence virtually identical to that of the wild-type protein, though the activity of the variant is 3 orders of magnitude lower at all values of pH between pH 5 and 8.5. These findings suggest that the spin state and coordination environment of the heme iron in cytochrome c peroxidase do not dictate the rate of substrate (cytochrome c) oxidation. Binding of cyanide to the variant enzyme results in formation of a single species as detected by NMR spectroscopy. Analysis of high-resolution 1D and 2D 1H-NMR and 15N-NMR spectra of the cyanide adduct has permitted characterization of the properties of this derivative and the strength of the proximal ligand bond to the heme iron. Disruption of the hydrogen bond between the proximal histidine and Asp235 that exists in the wild-type enzyme dramatically reduces the strength of the interaction between the proximal ligand and the iron; this effect combined with concurrent changes in the distal heme-binding pocket accounts for the increase in reduction potential reported for the Fe3+/Fe2+ couple. The catalytic consequences of the structural and electronic properties of the variant elucidated in this study are discussed.


Assuntos
Citocromo-c Peroxidase/química , Alanina , Ácido Aspártico , Sequência de Bases , Sítios de Ligação , Espectroscopia de Ressonância de Spin Eletrônica , Heme/metabolismo , Histidina/química , Ligação de Hidrogênio , Concentração de Íons de Hidrogênio , Ferro/química , Cinética , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Oligodesoxirribonucleotídeos/química , Proteínas Recombinantes , Análise Espectral , Relação Estrutura-Atividade , Temperatura , Triptofano/química
20.
Biochemistry ; 32(49): 13483-9, 1993 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-8257683

RESUMO

The 1H NMR spectroscopy was used to study lignin peroxidase (LiP) and manganese peroxidase (MnP) containing deuterated histidines. LiP and MnP were obtained from a histidine auxotroph of the fungus Phanerochaete chrysosporium grown in the presence of deuterated histidines. The derivatives with deuterated histidines have allowed a firm assignment of the protons of the distal and proximal histidines. We have also found that the LiP from this strain exhibits different orientations of the 2-vinyl group compared to the LiP from the strain previously studied. Mobility of the group has also been detected, thus explaining the apparent inconsistency between X-ray solid-state and NMR solution data. The 15N shift values of 15N-enriched CN- in the cyanide derivatives of LiP and MnP have also been measured. The shift patterns, both for 15N and for the proximal histidine protons of several peroxidases, are consistent with predominant contact shift contributions which reflect the bond strength of the metal-axial ligand. Finally, our results confirm a correlation between shift values of 15N and those of proximal histidine protons and the Fe3+/Fe2+ redox potentials.


Assuntos
Cianetos/química , Espectroscopia de Ressonância Magnética , Peroxidases/química , Basidiomycota/enzimologia , Deutério , Histidina/química , Estrutura Molecular
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