Phenotypic and molecular genetics study of Geotrichum candidumLink (1809) and Geotrichum silvicola Pimenta (2005) cultivated on mitis salivarius agar.

BACKGROUND: Geotrichum is a genus of fungi found in different habitats throughout the world. Although Geotrichum and its related species have been extensively reclassified and taxonomically revised, it is still the target for many researches. METHODS AND RESULTS: In this study, phenotypic and molecular genetics comparisons were performed between Geotrichum candidum and Geotrichum silvicola. Mitis Salivarius Agar was used as the growing medium for the phenotypic comparison study, which was carried out at two temperatures (20-25 and 37 °C). For genotypic comparison, we compared the 18 S, ITS, and 28 S sequences of universal DNA barcode regions of both species. Important findings on the new culture media for fungal isolation were revealed by the results. The phenotypic variation between the two species' colonies, including their shapes, sizes, textures and growth rates, were strikingly different. DNA sequences of both species showed that pairwise identities of the species were 99.9% for 18 S, 100% for ITS and 99.6% for 28 S regions. CONCLUSIONS: Contrary to what is commonly seen, the results showed that 18 S, ITS and 28 S failed to discriminate the species. The first investigation into the performance of Mitis Salivarius Agar as a fungus culture medium is reported in this work, and proved its efficiency. Additionally, this is the first study to compare G. candidum with G. silvicola by means of both phenotypic and genotypic analysis.

Fatty acid methyl ester analysis of Aspergillus fumigatus isolated from fruit pulps for biodiesel production using GC-MS spectrometry.

In this study, a total of six fungal samples were isolated from apple, strawberry and orange pulp. DNA sequence analysis was used as molecular identification method. ITS region was aligned in DNA sequence analysis, and an algorithm sequence similarity was done using BLAST (Basic Local Alignment Search Tool) program to identify these isolates. All the six isolates were identified as Aspergillus fumigates. The total lipid content was varied in the isolates which were ranged from 29.4 to 21.0 mg/100 ml. Moreover, the obtained lipid form mycelium biomass of the isolates was transesterified by a base catalyst. The methyl esters were analyzed by using GC-MS. GC-MS Spectrometry revealed the presence of different fatty acids with long chain (C11:0, C15:0, C17:1, C18:2, C16:1). High efficiency biodiesel can be obtained using long-chain fatty acids. Fatty acid profiles of A. fumigatus isolated from different fruit pulps have confirmed its potentiality as well as showed the beneficial utilization of these fatty acids for biodiesel production.

Predicting coral dynamics through climate change.

Thermal-stress events are changing the composition of many coral reefs worldwide. Yet, determining the rates of coral recovery and their long-term responses to increasing sea-surface temperatures is challenging. To do so, we first estimated coral recovery rates following past disturbances on reefs in southern Japan and Western Australia. Recovery rates varied between regions, with the reefs in southern Japan showing more rapid recovery rates (intrinsic rate of increase, r = 0.38 year-1) than reefs in Western Australia (r = 0.17 year-1). Second, we input these recovery rates into a novel, nonlinear hybrid-stochastic-dynamical system to predict the responses of Indo-Pacific coral populations to complex inter-annual temperature cycles into the year 2100. The coral recovery rates were overlaid on background increases in global sea-surface temperatures, under three different climate-change scenarios. The models predicted rapid recovery at both localities with the infrequent and low-magnitude temperature anomalies expected under a conservative climate-change scenario, Representative Concentration Pathway (RCP) 4.5. With moderate increases in ocean temperatures (RCP 6.0) the coral populations showed a bimodal response, with model runs showing either recovery or collapse. Under a business-as-usual climate-change scenario (RCP 8.5), with frequent and intense temperature anomalies, coral recovery was unlikely.

Decolorization potential of some reactive dyes with crude laccase and laccase-mediated system.

In this study, decolorization of dyestuffs, such as Reactive Red 198, Rem Blue RR, Dylon Navy 17, Rem Red RR, and Rem Yellow RR was studied using laccase and laccase-mediated system. The laccases are known to have an important potential for remediation of pollutants. Among these dyestuffs, decolorization of Rem Blue RR and Dylon Navy 17 was performed with crude laccase under optimized conditions. Vanillin was selected as laccase mediator after screening six different compounds with Rem Yellow RR, Reactive Red 198, and Rem Red RR as substrates. However, Rem Yellow RR was not decolorized by either laccase or laccase-mediated system. It is observed that the culture supernatant contained high laccase activity after treatment with catalase that was responsible for the decolorization. Besides, culture supernatant with high laccase activity as enzyme source was treated with catalase; in this way, the hypothesis that laccase was the enzyme responsible for decolorization was supported. The Rem Blue RR was decolorized with 64.84% under the optimum conditions and Dylon Navy 17 with 75.43% with crude laccase. However, using the laccase and vanillin, the decolorization of Reactive Red 198 and Rem Red RR was found to be 62% and 68%, respectively. Our study demonstrated that the decolorization abilities of laccase and/or laccase mediator systems were based on the types of mediator, the dye structure, and the standard experimental conditions. Also, the electrochemical behaviors of some samples were studied. The redox potentials of these samples were determined using cyclic voltammetry on glassy carbon electrode in phosphate buffer (pH 6) solution.

Enhancement with inducers of lacasse production by some strains and application of enzyme to dechlorination of 2, 4, 5-trichlorophenol

Lacasse is one of the extracellular enzymes excreted from white and brown rot fungi, which is involved in ligninolysis. In the present study, the effects of the addition of lacasse inducers to the medium on enhancement of enzyme production under conditions of submerged fermentation were researched. At first, a culture medium was selected suitable for lacasse production. To increase the production of lacasse using different inducers and to examine the ability of dechlorination, this article focuses on screen lacasse activity of 21 basidiomycetes isolates grown in five culture media. All inducers evaluated influenced lacasse activity positively except for gallic acid, mannitol, and malt extract for studied isolates. Our findings showed that lacasse activity of Trametes versicolor ATCC (200801) when it was induced with wheat bran reached up to 29.08 U ml-1 and was examined the ability of dechlorination of 2, 4, 5-trichlorophenol (2,4,5-TCP). The parameters including pH, initial substrate concentration, amount of enzyme, period of reaction, and temperature were tested for dechlorination process. Correlation between oxygen consumption and dechlorination processes under the determined optimum conditions was analyzed. Toxicity of 2, 4, 5-TCP before and after enzymatic treatment was evaluated by Microtox test. The results demonstrated that toxicity of intermediates formed 2, 4, 5-TCP did not change.

New fungal biomasses for cyanide biodegradation.

Cyanide, a hazardous substance, is released into the environment as a result of natural processes of various industrial activities which is a toxic pollutant according to Environmental Protection Agency. In nature, some microorganisms are responsible for the degradation of cyanide, but there is only limited information about the degradation characteristics of Basidiomycetes for cyanide. The aim of the present study is to determine cyanide degradation characteristics in some Basidiomycetes strains including Polyporus arcularius (T 438), Schizophyllum commune (T 701), Clavariadelphus truncatus (T 192), Pleurotus eryngii (M 102), Ganoderma applanatum (M 105), Trametes versicolor (D 22), Cerrena unicolor (D 30), Schizophyllum commune (D 35) and Ganoderma lucidum (D 33). The cyanide degradation activities of P. arcularius S. commune and G. lucidum were found to be more than that of the other fungi examined. The parameters including incubation time, amount of biomass, initial cyanide concentration, temperature, pH and agitation rate were optimized for the selected three potential fungal strains. The maximum cyanide degradation was obtained after 48 h of incubation at 30°C by P. arcularius (T 438). The optimum pH and agitation rate were measured as 10.5 and 150 rev/min, respectively. The amount of biomass was found as 3.0 g for the maximum cyanide biodegradation with an initial cyanide concentration of 100mg/L. In this study, agar was chosen entrapment agent for the immobilization of effective biomass. We suggested that P. arcularius (T 438) could be effective in the treatment of contaminated sites with cyanide due to capability of degrading cyanide.

Biodegradation of cyanide by a white rot fungus, Trametes versicolor.

The cyanide degradation abilities of three white rot fungi, Trametes versicolor ATCC 200801, Phanerochaete chrysosporium ME 496 and Pleurotus sajor-caju, were examined. T. versicolor was the most effective with 0.35 g dry cell/100 ml degrading 2 mM KCN (130 mg/l) over 42 h, at 30 degrees C, pH 10.5 with stirring at 150 rpm.