Genome and evolution of the shade-requiring medicinal herb Panax ginseng.

Panax ginseng C. A. Meyer, reputed as the king of medicinal herbs, has slow growth, long generation time, low seed production and complicated genome structure that hamper its study. Here, we unveil the genomic architecture of tetraploid P. ginseng by de novo genome assembly, representing 2.98 Gbp with 59 352 annotated genes. Resequencing data indicated that diploid Panax species diverged in association with global warming in Southern Asia, and two North American species evolved via two intercontinental migrations. Two whole genome duplications (WGD) occurred in the family Araliaceae (including Panax) after divergence with the Apiaceae, the more recent one contributing to the ability of P. ginseng to overwinter, enabling it to spread broadly through the Northern Hemisphere. Functional and evolutionary analyses suggest that production of pharmacologically important dammarane-type ginsenosides originated in Panax and are produced largely in shoot tissues and transported to roots; that newly evolved P. ginseng fatty acid desaturases increase freezing tolerance; and that unprecedented retention of chlorophyll a/b binding protein genes enables efficient photosynthesis under low light. A genome-scale metabolic network provides a holistic view of Panax ginsenoside biosynthesis. This study provides valuable resources for improving medicinal values of ginseng either through genomics-assisted breeding or metabolic engineering.

Performance Analysis of Amplify-and-Forward Systems with Single Relay Selection in Correlated Environments.

In this paper, we consider amplify-and-forward (AnF) cooperative systems under correlated fading environments. We first present a brief overview of existing works on the effect of channel correlations on the system performance. We then focus on our main contribution which is analyzing the outage probability of a multi-AnF-relay system with the best relay selection (BRS) scheme under a condition that two channels of each relay, source-relay and relay-destination channels, are correlated. Using lower and upper bounds on the end-to-end received signal-to-noise ratio (SNR) at the destination, we derive corresponding upper and lower bounds on the system outage probability. We prove that the system can achieve a diversity order (DO) equal to the number of relays. In addition, and importantly, we show that the considered correlation form has a constructive effect on the system performance. In other words, the larger the correlation coefficient, the better system performance. Our analytic results are corroborated by extensive Monte-Carlo simulations.