RESUMO
The quest for higher spatial and/or temporal resolution in functional MRI (fMRI) while preserving a sufficient temporal signal-to-noise ratio (tSNR) has generated a tremendous amount of methodological contributions in the last decade ranging from Cartesian vs. non-Cartesian readouts, 2D vs. 3D acquisition strategies, parallel imaging and/or compressed sensing (CS) accelerations and simultaneous multi-slice acquisitions to cite a few. In this paper, we investigate the use of a finely tuned version of 3D-SPARKLING. This is a non-Cartesian CS-based acquisition technique for high spatial resolution whole-brain fMRI. We compare it to state-of-the-art Cartesian 3D-EPI during both a retinotopic mapping paradigm and resting-state acquisitions at 1mm3 (isotropic spatial resolution). This study involves six healthy volunteers and both acquisition sequences were run on each individual in a randomly-balanced order across subjects. The performances of both acquisition techniques are compared to each other in regards to tSNR, sensitivity to the BOLD effect and spatial specificity. Our findings reveal that 3D-SPARKLING has a higher tSNR than 3D-EPI, an improved sensitivity to detect the BOLD contrast in the gray matter, and an improved spatial specificity. Compared to 3D-EPI, 3D-SPARKLING yields, on average, 7% more activated voxels in the gray matter relative to the total number of activated voxels.
Assuntos
Mapeamento Encefálico , Encéfalo , Imageamento Tridimensional , Imageamento por Ressonância Magnética , Razão Sinal-Ruído , Humanos , Adulto , Imageamento por Ressonância Magnética/métodos , Masculino , Mapeamento Encefálico/métodos , Imageamento Tridimensional/métodos , Encéfalo/diagnóstico por imagem , Encéfalo/fisiologia , Feminino , Imagem Ecoplanar/métodos , Adulto JovemRESUMO
Much of human culture's advanced technology owes its existence to the ability to mentally manipulate quantities. Neuroscience has described the brain regions overall recruited by numerical tasks and the neuronal codes representing individual quantities during perceptual tasks. Nevertheless, it remains unknown how quantity representations are combined or transformed during mental computations and how specific quantities are coded in the brain when generated as the result of internal computations rather than evoked by a stimulus. Here, we imaged the brains of adult human subjects at 7 Tesla during an approximate calculation task designed to disentangle in- and outputs of the computation from the operation itself. While physically presented sample numerosities were distinguished in activity patterns along the dorsal visual pathway and within frontal and occipito-temporal regions, a representation of the internally generated result was most prominently detected in higher order regions such as angular gyrus and lateral prefrontal cortex. Behavioral precision in the task was related to cross-decoding performance between sample and result representations in medial IPS regions. This suggests the transformation of sample into result may be carried out within dorsal stream sensory-motor integration regions, and resulting outputs maintained for task purposes in higher-level regions in a format possibly detached from sensory-evoked inputs.
Assuntos
Mapeamento Encefálico , Imageamento por Ressonância Magnética , Adulto , Humanos , Mapeamento Encefálico/métodos , Imageamento por Ressonância Magnética/métodos , Encéfalo/diagnóstico por imagem , Lobo Parietal/fisiologia , Lobo Temporal , Estimulação Luminosa/métodosRESUMO
OBJECTIVE: To assess the possible influence of third-order shim coils on the behavior of the gradient field and in gradient-magnet interactions at 7 T and above. MATERIALS AND METHODS: Gradient impulse response function measurements were performed at 5 sites spanning field strengths from 7 to 11.7 T, all of them sharing the same exact whole-body gradient coil design. Mechanical fixation and boundary conditions of the gradient coil were altered in several ways at one site to study the impact of mechanical coupling with the magnet on the field perturbations. Vibrations, power deposition in the He bath, and field dynamics were characterized at 11.7 T with the third-order shim coils connected and disconnected inside the Faraday cage. RESULTS: For the same whole-body gradient coil design, all measurements differed greatly based on the third-order shim coil configuration (connected or not). Vibrations and gradient transfer function peaks could be affected by a factor of 2 or more, depending on the resonances. Disconnecting the third-order shim coils at 11.7 T also suppressed almost completely power deposition peaks at some frequencies. DISCUSSION: Third-order shim coil configurations can have major impact in gradient-magnet interactions with consequences on potential hardware damage, magnet heating, and image quality going beyond EPI acquisitions.
Assuntos
Imageamento por Ressonância Magnética , Imãs , Imageamento por Ressonância Magnética/métodosRESUMO
PURPOSE: Testing an RF coil prototype on subjects involves laborious verifications to ensure its safety. In particular, it requires preliminary electromagnetic simulations and their validations on phantoms to accurately predict the specific absorption rate (SAR). For coil design validation with a simpler safety procedure, the restricted SAR (rS) mode is proposed, enabling representative first experiments in vivo. The goal of the developed approach is to accelerate the transition of a custom coil system from prototype to clinical use. METHODS: The restricted specific absorption rate (SAR) (rS) mode imposes a radical limitation on the transmitted RF power based on a worst-case scenario of local RF power absorption. The limitations used are independent of the SAR spatial distribution, making this approach unconditionally safe. The developed rS protocol contains the sequences required for coil evaluation and satisfies the imposed rS conditions. It provides a quantitative characterization of the coil transmission and reception profiles and a qualitative evaluation of the anatomical images. Protocol validation was performed on commercial and pre-industrial prototype coils on a small cohort of healthy volunteers. RESULTS: The proposed rS protocol enables coil evaluation within an acquisition time compatible with common clinical protocol duration. The total time of all evaluation steps does not exceed 17 min. At the same time, the global SAR remains 100 times less than the International Electrotechnical Commission safety limit for played sequences. CONCLUSION: The rS protocol allows characterizing and comparing coil prototypes on volunteers without extensive electromagnetic calculations and phantom validations in an unconditionally safe way.
Assuntos
Imageamento por Ressonância Magnética , Ondas de Rádio , Humanos , Imageamento por Ressonância Magnética/métodos , Imagens de FantasmasRESUMO
PURPOSE: We propose a comprehensive workflow to design and build fully customized dense receive arrays for MRI, providing prediction of SNR and g-factor. Combined with additive manufacturing, this method allows an efficient implementation for any arbitrary loop configuration. To demonstrate the methodology, an innovative two-layer, 32-channel receive array is proposed. METHODS: The design workflow is based on numerical simulations using a commercial 3D electromagnetic software associated with circuit model co-simulations to provide the most accurate results in an efficient time. A model to compute the noise covariance matrix from circuit model scattering parameters is proposed. A 32-channel receive array at 7 T is simulated and fabricated with a two-layer design made of non-geometrically decoupled loops. Decoupling between loops is achieved using home-built direct high-impedance preamplifiers. The loops are 3D-printed with a new additive manufacturing technique to speed up integration while preserving the detailed geometry as simulated. The SNR and parallel-imaging performances of the proposed design are compared with a commercial coil, and in vivo images are acquired. RESULTS: The comparison of SNR and g-factors showed a good agreement between simulations and measurements. Experimental values are comparable with the ones measured on the commercial coil. Preliminary in vivo images also ensured the absence of any unexpected artifacts. CONCLUSION: A new design and performance analysis workflow is proposed and tested with a non-conventional 32-channel prototype at 7 T. Additive manufacturing of dense arrays of loops for brain imaging at ultrahigh field is validated for clinical use.
Assuntos
Imageamento por Ressonância Magnética , Neuroimagem , Imagens de Fantasmas , Desenho de Equipamento , Razão Sinal-Ruído , Imageamento por Ressonância Magnética/métodos , Fenômenos Eletromagnéticos , Encéfalo/diagnóstico por imagemRESUMO
PURPOSE: Static and dynamic B 0 $$ {\mathrm{B}}_0 $$ field imperfections are detrimental to functional MRI (fMRI) applications, especially at ultra-high magnetic fields (UHF). In this work, a field camera is used to assess the benefits of retrospectively correcting B 0 $$ {\mathrm{B}}_0 $$ field perturbations on Blood Oxygen Level Dependent (BOLD) sensitivity in non-Cartesian three-dimensional (3D)-SPARKLING fMRI acquisitions. METHODS: fMRI data were acquired at 1 mm 3 $$ {}^3 $$ and for a 2.4s-TR while concurrently monitoring in real-time field perturbations using a Skope Clip-on field camera in a novel experimental setting involving a shorter TR than the required minimal TR of the field probes. Measurements of the dynamic field deviations were used along with a static Δ B 0 $$ \Delta {\mathrm{B}}_0 $$ map to retrospectively correct static and dynamic field imperfections, respectively. In order to evaluate the impact of such a correction on fMRI volumes, a comparative study was conducted on healthy volunteers. RESULTS: Correction of B 0 $$ {\mathrm{B}}_0 $$ deviations improved image quality and yielded between 20% and 30% increase in median temporal signal-to-noise ratio (tSNR).Using fMRI data collected during a retinotopic mapping experiment, we demonstrated a significant increase in sensitivity to the BOLD contrast and improved accuracy of the BOLD phase maps: 44% (resp., 159%) more activated voxels were retrieved when using a significance control level based on a p-value of 0.001 without correcting for multiple comparisons (resp., 0.05 with a false discovery rate correction). CONCLUSION: 3D-SPARKLING fMRI hugely benefits from static and dynamic B 0 $$ {\mathrm{B}}_0 $$ imperfections correction. However, the proposed experimental protocol is flexible enough to be deployed on a large spectrum of encoding schemes, including arbitrary non-Cartesian readouts.
Assuntos
Encéfalo , Imageamento por Ressonância Magnética , Humanos , Imageamento por Ressonância Magnética/métodos , Encéfalo/diagnóstico por imagem , Mapeamento Encefálico/métodos , Estudos Retrospectivos , Razão Sinal-RuídoRESUMO
PURPOSE: MP2RAGE parameter optimization is redefined to allow more time-efficient MR acquisitions, whereas the T1 -based synthetic imaging framework is used to obtain on-demand T1 -weighted contrasts. Our aim was to validate this concept on healthy volunteers and patients with multiple sclerosis, using plug-and-play parallel-transmission brain imaging at 7 T. METHODS: A "time-efficient" MP2RAGE sequence was designed with optimized parameters including TI and TR set as small as possible. Extended phase graph formalism was used to set flip-angle values to maximize the gray-to-white-matter contrast-to-noise ratio (CNR). Several synthetic contrasts (UNI, EDGE, FGATIR, FLAWSMIN , FLAWSHCO ) were generated online based on the acquired T1 maps. Experimental validation was performed on 4 healthy volunteers at various spatial resolutions. Clinical applicability was evaluated on 6 patients with multiple sclerosis, scanned with both time-efficient and conventional MP2RAGE parameterizations. RESULTS: The proposed time-efficient MP2RAGE protocols reduced acquisition time by 40%, 30%, and 19% for brain imaging at (1 mm)3 , (0.80 mm)3 and (0.65 mm)3 , respectively, when compared with conventional parameterizations. They also provided all synthetic contrasts and comparable contrast-to-noise ratio on UNI images. The flexibility in parameter selection allowed us to obtain a whole-brain (0.45 mm)3 acquisition in 19 min 56 s. On patients with multiple sclerosis, a (0.67 mm)3 time-efficient acquisition enhanced cortical lesion visualization compared with a conventional (0.80 mm)3 protocol, while decreasing the scan time by 15%. CONCLUSION: The proposed optimization, associated with T1 -based synthetic contrasts, enabled substantial decrease of the acquisition time or higher spatial resolution scans for a given time budget, while generating all typical brain contrasts derived from MP2RAGE.
Assuntos
Imageamento por Ressonância Magnética , Esclerose Múltipla , Humanos , Imageamento por Ressonância Magnética/métodos , Encéfalo/diagnóstico por imagem , Encéfalo/patologia , Aumento da Imagem/métodos , Imageamento Tridimensional/métodos , Esclerose Múltipla/diagnóstico por imagem , Esclerose Múltipla/patologiaRESUMO
PURPOSE: Patient-induced inhomogeneities in the static magnetic field cause distortions and blurring (off-resonance artifacts) during acquisitions with long readouts such as in SWI. Conventional versatile correction methods based on extended Fourier models are too slow for clinical practice in computationally demanding cases such as 3D high-resolution non-Cartesian multi-coil acquisitions. THEORY: Most reconstruction methods can be accelerated when performing off-resonance correction by reducing the number of iterations, compressed coils, and correction components. Recent state-of-the-art unrolled deep learning architectures could help but are generally not adapted to corrupted measurements as they rely on the standard Fourier operator in the data consistency term. The combination of correction models and neural networks is therefore necessary to reduce reconstruction times. METHODS: Hybrid pipelines using UNets were trained stack-by-stack over 99 SWI 3D SPARKLING 20-fold accelerated acquisitions at 0.6 mm isotropic resolution using different off-resonance correction methods. Target images were obtained using slow model-based corrections based on self-estimated Δ B 0 $$ \Delta {B}_0 $$ field maps. The proposed strategies, tested over 11 volumes, are compared to model-only and network-only pipelines. RESULTS: The proposed hybrid pipelines achieved scores competing with two to three times slower baseline methods, and neural networks were observed to contribute both as pre-conditioner and through inter-iteration memory by allowing more degrees of freedom over the model design. CONCLUSION: A combination of model-based and network-based off-resonance correction was proposed to significantly accelerate conventional methods. Different promising synergies were observed between acceleration factors (iterations, coils, correction) and model/network that could be expanded in the future.
Assuntos
Aprendizado Profundo , Processamento de Imagem Assistida por Computador , Humanos , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Encéfalo , Redes Neurais de Computação , AlgoritmosRESUMO
PURPOSE: Non-Cartesian MRI with long arbitrary readout directions are susceptible to off-resonance artifacts due to patient induced B 0 $$ {B}_0 $$ inhomogeneities. This results in degraded image quality with strong signal losses and blurring. Current solutions to address this issue involve correcting the off-resonance artifacts during image reconstruction or reducing inhomogeneities through improved shimming. THEORY: The recently developed SPARKLING algorithm is extended to drastically diminish off-resonance artifacts by generating temporally smooth k-space sampling patterns. For doing so, the cost function which is optimized in SPARKLING is modified using a temporal weighting factor. Additionally, oversampling of the center of k-space beyond the Nyquist criteria is prevented through the use of gridded sampling in the region, enforced with affine constraints. METHODS: Prospective k-space data was acquired at 3 T on new trajectories, and we show robustness to B 0 $$ {\mathrm{B}}_0 $$ inhomogeneities through in silico experiments by adding Δ B 0 $$ \Delta {\mathrm{B}}_0 $$ through artificial degradation of system B 0 $$ {\mathrm{B}}_0 $$ shimming. Later on, in vivo experiments were carried out to optimize parameters of the new improvements and benchmark the gain in performance. RESULTS: The improved trajectories allowed for the recovery of signal dropouts observed on original SPARKLING acquisitions at larger B 0 $$ {\mathrm{B}}_0 $$ field inhomogeneities. Furthermore, imposing gridded sampling at the center of k-space provided improved reconstructed image quality with limited artifacts. CONCLUSION: These advancements allowed us for nearly 4 . 62 × $$ 4.62\times $$ shorter scan time compared to GRAPPA-p4x1, allowing us to reach 600 µm isotropic resolution in 3D T 2 ∗ $$ {\mathrm{T}}_2^{\ast } $$ -w imaging in just 3.3 min at 3 T with negligible degradation in image quality.
Assuntos
Processamento de Imagem Assistida por Computador , Imageamento por Ressonância Magnética , Humanos , Estudos Prospectivos , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Algoritmos , Artefatos , Imagens de FantasmasRESUMO
PURPOSE: To optimize the homogeneity of the presaturation module in a Chemical Exchange Saturation Transfer (CEST) acquisition at 7 T using parallel transmission (pTx). THEORY AND METHODS: An optimized pTx-CEST presaturation scheme based on precomputed universal pulses was designed. The optimization was performed by minimizing the L2-norm between the effective B 1 , RMS + $$ {B}_{1,\mathrm{RMS}}^{+} $$ and a given target while imposing energy constraints under virtual observation points (VOPs) supervision. The proposed method was evaluated through simulations and experimentally, both in vitro, on a realistic human head phantom, and in vivo, on healthy volunteers. The results were compared with circular polarization (CP) presaturation and other pTx approaches previously proposed. All experiments were conducted on a 7 T MRI scanner using a commercial 8Tx/32Rx head coil. RESULTS: The simulations show that the proposed pTx strategy boosted with VOPs is superior to the CP mode and existent pTx approaches. While the best results are obtained with subject specific pulses, the gain provided by the use of VOPs renders the universal pulses superior to tailored pulses optimized under vendor provided Specific Absorption Rate (SAR) management. In the phantom, the glucose MTR asym $$ {\mathrm{MTR}}_{\mathrm{asym}} $$ map was significantly more homogeneous than with CP (root mean square error [RMSE] 17% vs. 30%). The efficiency of the method for in vivo hydroxyl, glutamate and rNOE weighted CEST acquisitions was also demonstrated. CONCLUSION: The use of a pTx presaturation scheme based on universal pulses optimized under VOP SAR management is significantly benefiting CEST imaging at high magnetic field.
Assuntos
Algoritmos , Imageamento por Ressonância Magnética , Humanos , Imageamento por Ressonância Magnética/métodos , Imagens de Fantasmas , Voluntários SaudáveisRESUMO
Increased static field inhomogeneities are a burden for human brain MRI at Ultra-High-Field. In particular they cause enhanced Echo-Planar image distortions and signal losses due to magnetic susceptibility gradients at air-tissue interfaces in the subject's head. In the past decade, Multi-Coil Arrays (MCA) have been proposed to shim the field in the brain better than the 2nd or 3rd order Spherical Harmonic (SH) coils usually offered by MRI manufacturers. Here we present a novel MCA, named SCOTCH, optimized for whole brain shimming. Based on a cylindrical structure, it features several layers of small coils whose shape, size and location are found from a principal component analysis of ideal stream functions computed from an internal 100-brain fieldmap database. From an Open-Access external database of 126 brains, our SCOTCH implementation is shown to be equivalent to a partial 7th-order SH system with unlimited power, outperforming all known existing MCA prototypes. This result is further confirmed by a low-cost 30-cm diameter SCOTCH prototype built with 48 coils on 3 layers, and tested on 7 volunteers at 7T with a parallel-transmit RF coil made to be inserted in SCOTCH. Echo-Planar images of the subject brains before and after SCOTCH shimming show large signal recoveries, especially in the prefrontal cortex.
Assuntos
Processamento de Imagem Assistida por Computador , Imageamento por Ressonância Magnética , Encéfalo/diagnóstico por imagem , Humanos , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Magnetismo , Ondas de RádioRESUMO
PURPOSE: The SNR at the center of a spherical phantom of known electrical properties was measured in quasi-identical experimental conditions as a function of magnetic field strength between 3 T and 11.7 T. METHODS: The SNR was measured at the center of a spherical water saline phantom with a gradient-recalled echo sequence. Measurements were performed at NeuroSpin at 3, 7, and 11.7 T. The phantom was then shipped to Maastricht University and then to the University of Minnesota for additional data points at 7, 9.4, and 10.5 T. Experiments were carried out with the exact same type of birdcage volume coil (except at 3 T, where a similar coil was used) to attempt at isolating the evolution of SNR with field strength alone. Phantom electrical properties were characterized over the corresponding frequency range. RESULTS: Electrical properties were found to barely vary over the frequency range. Removing the influence of the flip-angle excitation inhomogeneity was crucial, as expected. After such correction, measurements revealed a gain of SNR growing as B0 1.94 ± 0.16 compared with B0 2.13 according to ultimate intrinsic SNR theory. CONCLUSIONS: By using quasi-identical experimental setups (RF volume coil, phantom, electrical properties, and protocol), this work reports experimental data between 3 T and 11.7 T, enabling the comparison with SNR theories in which conductivity and permittivity can be assumed to be constant with respect to field strength. According to ultimate SNR theory, these results can be reasonably extrapolated to the performance of receive arrays with greater than about 32 elements for central SNR in the same spherical phantom.
Assuntos
Imageamento por Ressonância Magnética , Ondas de Rádio , Humanos , Campos Magnéticos , Imageamento por Ressonância Magnética/métodos , Imagens de Fantasmas , Razão Sinal-RuídoRESUMO
PURPOSE: Patient-induced inhomogeneities in the magnetic field cause distortions and blurring during acquisitions with long readouts such as in susceptibility-weighted imaging (SWI). Most correction methods require collecting an additional ΔB0$$ \Delta {\mathrm{B}}_0 $$ field map to remove these artifacts. THEORY: The static ΔB0$$ \Delta {\mathrm{B}}_0 $$ field map can be approximated with an acceptable error directly from a single echo acquisition in SWI. The main component of the observed phase is linearly related to ΔB0$$ \Delta {\mathrm{B}}_0 $$ and the echo time (TE), and the relative impact of non- ΔB0$$ \Delta {\mathrm{B}}_0 $$ terms becomes insignificant with TE$$ \mathrm{TE} $$ >20 ms at 3 T for a well-tuned system. METHODS: The main step is to combine and unfold the multi-channel phase maps wrapped many times, and several competing algorithms are compared for this purpose. Four in vivo brain data sets collected using the recently proposed 3D spreading projection algorithm for rapid k-space sampling (SPARKLING) readouts are used to assess the proposed method. RESULTS: The estimated 3D field maps generated with a 0.6 mm isotropic spatial resolution provide overall similar off-resonance corrections compared to reference corrections based on an external ΔB0$$ \Delta {\mathrm{B}}_0 $$ acquisitions, and even improved for 2 of 4 individuals. Although a small estimation error is expected, no aftermath was observed in the proposed corrections, whereas degradations were observed in the references. CONCLUSION: A static ΔB0$$ \Delta {\mathrm{B}}_0 $$ field map estimation method was proposed to take advantage of acquisitions with long echo times, and outperformed the reference technique based on an external field map. The difference can be attributed to an inherent robustness to mismatches between volumes and external ΔB0$$ \Delta {\mathrm{B}}_0 $$ maps, and diverse other sources investigated.
Assuntos
Artefatos , Imageamento por Ressonância Magnética , Algoritmos , Encéfalo/diagnóstico por imagem , Imagem Ecoplanar/métodos , Humanos , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Imagens de FantasmasRESUMO
PURPOSE: The use of dielectric pads to redistribute the radiofrequency fields is currently a popular solution for 7 T MRI practical applications, especially in brain imaging. In this work, we tackle several downsides of the previous generation of dielectric pads. This new silicon carbide recipe makes them MR invisible and greatly extends the performance lifespan. METHOD: We produce a set of two 10x10x1cm3 dielectric pads based on silicon carbide (SiC) powder dispersed in 4-Fluoro 1, 3-dioxalan-2-one (FEC) and polyethylene Glycol (PEG). The stability of the complex permittivity and the invisibility of the pads are characterized experimentally. Numerical simulations are done to evaluate global and local SAR over the head in presence of the pads. B0, B1+ and standard imaging sequences are performed on healthy volunteers. RESULTS: SiC pads are compared to state-of-the-art perovskite based dielectric pads with similar dielectric properties (barium titanate). Numerical simulations confirm that head and local SAR are similar. MRI measurements confirm that the pads do not induce susceptibility artefacts and improve B1+ amplitude in the temporal lobe regions by 25% on average. CONCLUSION: We demonstrate the long-term performance and invisibility of these new pads in order to increase the contrast in the brain temporal lobes in a commercial 7 T MRI head coil.
Assuntos
Artefatos , Imageamento por Ressonância Magnética , Encéfalo/diagnóstico por imagem , Compostos Inorgânicos de Carbono , Humanos , Imageamento por Ressonância Magnética/métodos , Imagens de Fantasmas , Ondas de Rádio , Compostos de SilícioRESUMO
The Spreading Projection Algorithm for Rapid K-space sampLING, or SPARKLING, is an optimization-driven method that has been recently introduced for accelerated 2D MRI using compressed sensing. It has then been extended to address 3D imaging using either stacks of 2D sampling patterns or a local 3D strategy that optimizes a single sampling trajectory at a time. 2D SPARKLING actually performs variable density sampling (VDS) along a prescribed target density while maximizing sampling efficiency and meeting the gradient-based hardware constraints. However, 3D SPARKLING has remained limited in terms of acceleration factors along the third dimension if one wants to preserve a peaky point spread function (PSF) and thus good image quality. In this paper, in order to achieve higher acceleration factors in 3D imaging while preserving image quality, we propose a new efficient algorithm that performs optimization on full 3D SPARKLING. The proposed implementation based on fast multipole methods (FMM) allows us to design sampling patterns with up to 107 k-space samples, thus opening the door to 3D VDS. We compare multi-CPU and GPU implementations and demonstrate that the latter is optimal for 3D imaging in the high-resolution acquisition regime ( 600µ m isotropic). Finally, we show that this novel optimization for full 3D SPARKLING outperforms stacking strategies or 3D twisted projection imaging through retrospective and prospective studies on NIST phantom and in vivo brain scans at 3 Tesla taking the particular case of T2 *-w imaging. Overall the proposed method allows for 2.5-3.75x shorter scan times compared to GRAPPA-4 parallel imaging acquisition at 3 Tesla without compromising image quality.
Assuntos
Imageamento Tridimensional , Imageamento por Ressonância Magnética , Algoritmos , Processamento de Imagem Assistida por Computador/métodos , Imageamento Tridimensional/métodos , Imageamento por Ressonância Magnética/métodos , Imagens de Fantasmas , Estudos Prospectivos , Estudos RetrospectivosRESUMO
PURPOSE: An MR thermometry (MRT) method with motion and field fluctuation compensation is proposed to measure non-invasively sub-degree brain temperature variations occurring through radiofrequency (RF) power deposition during MR exams. METHODS: MRT at 7T with a multi-slice echo planar imaging (EPI) sequence and concurrent field monitoring was first tested in vitro to assess accuracy in the presence of external field perturbations, an optical probe being used for ground truth. In vivo, this strategy was complemented by a motion compensation scheme based on a dictionary pre-scan, as reported in some previous work, and was adapted to the human brain. Precision reached with this scheme was assessed on eight volunteers with a 5 minute-long low specific absorption rate (SAR) scan. Finally, temperature rise in the brain was measured twice on the same volunteers and with the same strategy, this time by employing a 20-minutes scan at the maximum SAR delivered with a commercial volume head coil. RESULTS: In vitro, the root mean square (RMS) error between optical probe and MRT measurements was 0.02°C with field sensor correction. In vivo, the low SAR scan returned a precision in temperature change measurement with field monitoring and motion compensation of 0.05°C. The 20-minutes maximum SAR scan returned a temperature rise throughout the inner-brain in the range of 0-0.2°C. Brain periphery remained too sensitive with respect to motion to lead to equally conclusive results. CONCLUSION: Sub-degree temperature rise in the inner human brain was characterized experimentally throughout RF exposure. Potential applications include improvement of human thermal models and revision of safety margins.
Assuntos
Termometria , Encéfalo/diagnóstico por imagem , Humanos , Imageamento por Ressonância Magnética , Imagens de Fantasmas , TemperaturaRESUMO
The pathophysiological processes underlying the development and progression of Alzheimer's disease (AD) on the neuronal level are still unclear. Previous research has hinted at metabolic energy deficits and altered sodium homeostasis with impaired neuronal function as a potential metabolic marker relevant for neurotransmission in AD. Using sodium (23 Na) magnetic resonance (MR) imaging on an ultra-high-field 7 Tesla MR scanner, we found increased cerebral tissue sodium concentration (TSC) in 17 biomarker-defined AD patients compared to 22 age-matched control subjects in vivo. TSC was highly discriminative between controls and early AD stages and was predictive for cognitive state, and associated with regional tau load assessed with flortaucipir-positron emission tomography as a possible mediator of TSC-associated neurodegeneration. TSC could therefore serve as a non-invasive, stage-dependent, metabolic imaging marker. Setting a focus on cellular metabolism and potentially disturbed interneuronal communication due to energy-dependent altered cell homeostasis could hamper progressive cognitive decline by targeting these processes in future interventions.
Assuntos
Doença de Alzheimer , Tomografia por Emissão de Pósitrons , Sódio/metabolismo , Transmissão Sináptica , Idoso , Doença de Alzheimer/metabolismo , Doença de Alzheimer/fisiopatologia , Carbolinas , Disfunção Cognitiva/metabolismo , Disfunção Cognitiva/fisiopatologia , Feminino , Humanos , Imageamento por Ressonância Magnética , Masculino , Sódio/efeitos da radiação , Proteínas tau/metabolismoRESUMO
For functional MRI with a multi-channel receiver RF coil, images are often reconstructed channel by channel, resulting into multiple images per time frame. The final image to analyze usually is the result of the covariance Sum-of-Squares (covSoS) combination across these channels. Although this reconstruction is quasi-optimal in SNR, it is not necessarily the case in terms of temporal SNR (tSNR) of the time series, which is yet a more relevant metric for fMRI data quality. In this work, we investigated tSNR optimality through voxel-wise RF coil combination and its effects on BOLD sensitivity. An analytical solution for an optimal RF coil combination is described, which is somewhat tied to the extended Krueger-Glover model involving both thermal and physiological noise covariance matrices. Compared experimentally to covSOS on four volunteers at 7T, the method yielded great improvement of tSNR but, surprisingly, did not result into higher BOLD sensitivity. Solutions to improve the method such as for example the t-score for the mean recently proposed are also explored, but result into similar observations once the statistics are corrected properly. Overall, the work shows that data-driven RF coil combinations based on tSNR considerations alone should be avoided unless additional and unbiased assumptions can be made.
Assuntos
Imageamento por Ressonância Magnética , Humanos , Ondas de RádioRESUMO
PURPOSE: To theoretically describe, design, and test the new geometry of the birdcage coil for 7 Tesla anatomical brain imaging, which includes a large window on top, without deliberately jeopardizing its homogeneity and efficiency. This opencage will not only improve patient comfort but also enable the volunteer to follow functional MRI stimuli. This design could also facilitate the tracking of patient compliance and enable better correction of the movement. METHODS: Via the transfer matrix approach, a birdcage-like coil with a nonperiodic distribution of rungs is constructed with optimized currents in the coil rungs. Subsequently, the coil is adjusted in full-wave simulations. Then, the coil is assembled, fine-tuned, and matched on the bench. Finally, these results are confirmed experimentally on a phantom and in vivo. RESULTS: Indeed, the computed isolation of -14.9 dB between the feeding ports of the coil and the symmetry of the circular polarized mode pattern transmit RF magnetic field ( B1+ ) showed that the coil was properly optimized. An experimental assessment of the developed coil showed competitive transmit efficiency and coverage compared with the conventional birdcage coil of similar size. CONCLUSION: The proposed opencage coil can be designed and work without a dramatic drop of performance in terms of the B1+ field homogeneity, transmit efficiency ( B1+ / Pref ), peak local specific absorption rate ( SAR10g ) and SAR efficiency ( B1+ / SAR10g ).
Assuntos
Cabeça , Imageamento por Ressonância Magnética , Encéfalo/diagnóstico por imagem , Desenho de Equipamento , Cabeça/diagnóstico por imagem , Humanos , Imagens de FantasmasRESUMO
OBJECTIVE: 7-Tesla MRI of the hippocampus enhances the visualization of its internal substructures. Among these substructures, the cornu Ammonis and subiculum form a contiguous folded ribbon of gray matter. Here, we propose a method to analyze local thickness measurements of this ribbon. METHODS: We introduce an original approach based upon the estimation of a diffeomorphic vector field that traverses the ribbon. The method is designed to handle specificities of the hippocampus and corresponding 7-Tesla acquisitions: highly convoluted surface, non-closed ribbon, incompletely defined inner/outer boundaries, anisotropic acquisitions. We furthermore propose to conduct group comparisons using a population template built from the central surfaces of individual subjects. RESULTS: We first assessed the robustness of our approach to anisotropy, as well as to inter-rater variability, on a post-mortem scan and on in vivo acquisitions respectively. We then conducted a group study on a dataset of in vivo MRI from temporal lobe epilepsy (TLE) patients and healthy controls. The method detected local thinning patterns in patients, predominantly ipsilaterally to the seizure focus, which is consistent with medical knowledge. CONCLUSION: This new technique allows measuring the thickness of the hippocampus from 7-Tesla MRI. It shows good robustness with respect to anisotropy and inter-rater variability and has the potential to detect local atrophy in patients. SIGNIFICANCE: As 7-Tesla MRI is increasingly available, this new method may become a useful tool to study local alterations of the hippocampus in brain disorders. It is made freely available to the community (code: https://github.com/aramis-lab/hiplay7-thickness, postmortem segmentation: https://doi.org/10.5281/zenodo.3533264).