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1.
Methods Enzymol ; 580: 539-56, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27586348

RESUMO

Artificial metalloenzymes represent an attractive means of combining state-of-the-art transition metal catalysis with the benefits of natural enzymes. Despite the tremendous recent progress in this field, current efforts toward the directed evolution of these hybrid biocatalysts mainly rely on the laborious, individual purification of protein variants rendering the throughput, and hence the outcome of these campaigns feeble. We have recently developed a screening platform for the directed evolution of artificial metalloenzymes based on the streptavidin-biotin technology in the periplasm of the Gram-negative bacterium Escherichia coli. This periplasmic compartmentalization strategy comprises a number of compelling advantages, in particular with respect to artificial metalloenzymes, which lead to a drastic increase in the throughput of screening campaigns and additionally are of unique value for future in vivo applications. Therefore, we highlight here the benefits of this strategy and intend to propose a generalized guideline for the development of novel transition metal-based biocatalysts by directed evolution in order to extend the natural enzymatic repertoire.


Assuntos
Evolução Molecular Direcionada , Enzimas/química , Metaloproteínas/química , Periplasma/química , Catálise , Enzimas/síntese química , Enzimas/genética , Metaloproteínas/síntese química , Metaloproteínas/genética , Metais/química , Periplasma/genética , Engenharia de Proteínas
2.
Nat Chem ; 5(2): 93-9, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23344429

RESUMO

Enzymatic catalysis and homogeneous catalysis offer complementary means to address synthetic challenges, both in chemistry and in biology. Despite its attractiveness, the implementation of concurrent cascade reactions that combine an organometallic catalyst with an enzyme has proven challenging because of the mutual inactivation of both catalysts. To address this, we show that incorporation of a d(6)-piano stool complex within a host protein affords an artificial transfer hydrogenase (ATHase) that is fully compatible with and complementary to natural enzymes, thus enabling efficient concurrent tandem catalysis. To illustrate the generality of the approach, the ATHase was combined with various NADH-, FAD- and haem-dependent enzymes, resulting in orthogonal redox cascades. Up to three enzymes were integrated in the cascade and combined with the ATHase with a view to achieving (i) a double stereoselective amine deracemization, (ii) a horseradish peroxidase-coupled readout of the transfer hydrogenase activity towards its genetic optimization, (iii) the formation of L-pipecolic acid from L-lysine and (iv) regeneration of NADH to promote a monooxygenase-catalysed oxyfunctionalization reaction.


Assuntos
Hidrogenase/síntese química , Hidrogenase/metabolismo , Aminas/química , Aminoácido Oxirredutases/metabolismo , Catálise , Colorimetria , Iminas/química , Modelos Moleculares , Biologia Molecular , Estrutura Molecular , Compostos Organometálicos/química , Compostos Organometálicos/metabolismo , Oxirredução , Isoformas de Proteínas , Proteínas/química , Proteínas/metabolismo
3.
Knee ; 19(5): 564-70, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22001289

RESUMO

Single femoral radius TKRs have been reported to improve quadriceps' mechanical advantage, leading to enhanced patient function. An increased patellar tendon moment arm (PTMA) has been cited as the main feature leading to improved quadriceps' mechanical advantage. However, these designs often incorporate a recessed trochlea which alters the patellar mechanism and may contribute to improved quadriceps' mechanical advantage. This study simultaneously measured the PTMA using two and three dimensional methods, as well as quadriceps forces (QF), patellofemoral kinematics and tibiofemoral kinematics in a motion analysis laboratory during an open chain leg extension activity. Six cadaveric knees were tested in the normal state and after implantation of three different single femoral radius TKR designs: cruciate retaining, posterior stabilised and rotating platform posterior stabilised (Stryker, Newbury, UK). QFs in the TKRs were between 15% and 20% lower than normal between 60° and 70° flexion. The increase in PTMA was insufficient to explain the reduced QF in the TKRs. The patellar flexion angle (PFA) of the TKRs was lower than normal at knee flexion angles greater than 50°, probably as a result of the recessed trochlea. A simple patellar model demonstrated that the reduced PFA may explain a large proportion of the reduction in QF after single radius TKR.


Assuntos
Artroplastia do Joelho , Prótese do Joelho , Modelos Teóricos , Força Muscular/fisiologia , Ligamento Patelar/fisiopatologia , Músculo Quadríceps/fisiopatologia , Amplitude de Movimento Articular , Idoso , Idoso de 80 Anos ou mais , Fenômenos Biomecânicos , Cadáver , Humanos , Pessoa de Meia-Idade , Desenho de Prótese
4.
Knee ; 19(4): 299-305, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22015171

RESUMO

Abnormal in vivo Total Knee Replacement (TKR) kinetics is influenced by a range of factors, particularly by changes to the knee's geometric parameters such as the patellar tendon moment arm (PTMA). In this study, ground reaction force (GRF) measurements were combined with simultaneous fluoroscopic image measurements to investigate the relationship between abnormal TKR kinetics and geometric parameters. Nine Scorpio Cruciate Retaining (CR) TKR (Stryker, Newbury, UK), nine Scorpio Posterior Stabilized (PS) TKR and seven normal subjects performed a step-up activity on a forceplate in view of a fluoroscope. The TKR subjects were part of a larger ongoing randomised controlled trial. The maximum external knee flexion moment was 22.0% lower in the Scorpio PS group compared to the Scorpio CR group. No significant differences in PTMA were found between the groups. The Scorpio PS had a low-riding patella, with a 30.7% reduction in patellar height compared to the Scorpio CR. This was probably due to using a thick tibial insert after PCL release in the PS, and led to an 8° increase in patellar flexion angle which altered the patellar mechanism and reduced quadriceps' mechanical advantage. Consequently, PS subjects stepped-up more cautiously with a reduced knee flexion moment.


Assuntos
Artroplastia do Joelho , Patela/anatomia & histologia , Idoso , Feminino , Fluoroscopia , Humanos , Articulação do Joelho/fisiopatologia , Masculino , Pessoa de Meia-Idade , Músculo Quadríceps , Amplitude de Movimento Articular
5.
J Bone Joint Surg Br ; 93(7): 907-13, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21705562

RESUMO

Bicruciate-stabilised total knee replacement (TKR) aims to restore normal kinematics by replicating the function of both cruciate ligaments. We performed a prospective, randomised controlled trial in which bicruciate- and posterior-stabilised TKRs were implanted in 13 and 15 osteo-arthritic knees, respectively. The mean age of the bicruciate-stabilised group was 63.9 years (SD 10.00) and that of the posterior-stabilised group 63.2 years (SD 6.7). A control group comprised 14 normal subjects with a mean age of 67.9 years (SD 7.9). The patellar tendon angle (PTA) was measured one week pre-operatively and at seven weeks post-operatively during knee extension, flexion and step-up exercises. At near full extension during step-up, the bicruciate-stabilised TKR produced a higher mean PTA than the posterior-stabilised TKR, indicating that the bicruciate design at least partially restored the kinematic role of the anterior cruciate ligament. The bicruciate-stabilised TKR largely restored the pre-operative kinematics, whereas the posterior-stabilised TKR resulted in a consistently lower PTA at all activities. The PTA in the pre-operative knees was higher than in the control group during the step-up and at near full knee extension. Overall, both groups generated a more normal PTA than that seen in previous studies in high knee flexion. This suggested that both designs of TKR were more effective at replicating the kinematic role of the posterior cruciate ligament than those used in previous studies.


Assuntos
Ligamento Cruzado Anterior/cirurgia , Artroplastia do Joelho/métodos , Prótese do Joelho , Osteoartrite do Joelho/cirurgia , Ligamento Cruzado Posterior/cirurgia , Idoso , Feminino , Humanos , Articulação do Joelho/fisiopatologia , Masculino , Pessoa de Meia-Idade , Estudos Prospectivos , Desenho de Prótese , Amplitude de Movimento Articular , Resultado do Tratamento
6.
East Mediterr Health J ; 16(6): 684-9, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20799599

RESUMO

Overuse of hospital outpatient clinics in Egypt, due to lack of an effective gatekeeper system, has threatened the sustainability of improved primary care services. In this pilot project in Menoufia in the Nile delta region, the price of direct hospital outpatient visits was increased, encouraging patients to attend primary care clinics first. As a result, direct hospital outpatient utilization decreased by 63% in the project area compared with a 4% increase in a control district. The majority of this reduction was accounted for by patients attending either public primary care clinics or private clinics. Increasing the price of direct hospital outpatient visits was an effective way to establish a gatekeeper role for family health clinics.


Assuntos
Reforma dos Serviços de Saúde/organização & administração , Aceitação pelo Paciente de Cuidados de Saúde/estatística & dados numéricos , Atenção Primária à Saúde/organização & administração , Encaminhamento e Consulta/organização & administração , Custos Diretos de Serviços/estatística & dados numéricos , Egito , Financiamento Pessoal , Pesquisas sobre Atenção à Saúde , Acessibilidade aos Serviços de Saúde/organização & administração , Custos Hospitalares/estatística & dados numéricos , Hospitais Públicos , Humanos , Marketing de Serviços de Saúde , Ambulatório Hospitalar/economia , Ambulatório Hospitalar/estatística & dados numéricos , Aceitação pelo Paciente de Cuidados de Saúde/psicologia , Projetos Piloto , Desenvolvimento de Programas , Avaliação de Programas e Projetos de Saúde , Gestão da Qualidade Total/organização & administração
7.
(East. Mediterr. health j).
em Inglês | WHO IRIS | ID: who-117940

RESUMO

Overuse of hospital outpatient clinics in Egypt, due to lack of an effective gatekeeper system, has threatened the sustainability of improved primary care services. In this pilot project in Menoufia in the Nile delta region, the price of direct hospital outpatient visits was increased, encouraging patients to attend primary care clinics first. As a result, direct hospital outpatient utilization decreased by 63% in the project area compared with a 4% increase in a control district. The majority of this reduction was accounted for by patients attending either public primary care clinics or private clinics. Increasing the price of direct hospital outpatient visits was an effective way to establish a gatekeeper role for family health clinics


Assuntos
Atenção Primária à Saúde , Projetos Piloto , Inquéritos Epidemiológicos , Encaminhamento e Consulta
8.
Environ Health Perspect ; 109(11): 1153-61, 2001 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11713001

RESUMO

Aroclor 1254 is a widely studied commercial polychlorinated biphenyl (PCB) mixture which, by definition, contains 54% chlorine by weight. Recent reports indicate substantial differences in the congener composition among Aroclor lots and hence their biologic effects. We designed the current study to compare the effects of two lots of Aroclor 1254 (lots 6024 and 124-191). We analyzed these two lots for PCB congeners, polychlorinated dibenzofurans (PCDFs), polychlorinated naphthalenes (PCNs), and polychlorinated dibenzodioxins (PCDDs). We used previously established techniques for analyzing intracellular Ca(2+) buffering and protein kinase C (PKC) translocation to test their biologic activity in neuronal preparations. PCB congener-specific analysis indicated that ortho and non-ortho congeners in these two lots varied in their percent contribution. Among all congeners, the percentages of non-ortho congeners (PCBs 77, 81, 126, and 169) were higher in lot 6024 (2.9% of total) than in lot 124-191 (0.02% of total). We detected no dioxins in these two lots (< 2 ppb). Although there are some differences in the congener composition, total PCNs were similar in both lots: 171 ppm in lot 6024 and 155 ppm in lot 124-191. However, total PCDFs were higher in lot 6024 (38.7 ppm) than in lot 124-191 (11.3 ppm). When we tested these two Aroclors on Ca(2+) buffering and PKC translocation in brain preparations, the effects were significantly different. Although lot 124-191 was more potent on PKC translocation than lot 6024, lot 6024 was slightly more active on Ca(2+) buffering than lot 124-191. These effects could not be attributed to the differences in the percentage of non-ortho congeners or PCDFs because they were inactive on these two parameters. The effects could not be attributed to PCNs because the levels were almost similar. The effects seen with two lots of Aroclor 1254 in neuronal cells were also not predicted based on the TCDD toxic equivalents (TEQs), although TEQs predicted the effects on ethoxyresorufin-O-deethylase (EROD) or methoxyresorufin-O-deethylase (MROD) activities. It is possible that the differential effects seen in neuronal cells could be caused by differences in the composition of ortho-congeners in these two mixtures, because PCBs with ortho-lateral substitutions can exhibit different activities on the selected neurochemical end points. Because of these differential effects with different lot numbers, the composition of Aroclor mixtures used in investigations should be disclosed.


Assuntos
Antitireóideos/efeitos adversos , Antitireóideos/química , Citocromo P-450 CYP1A1/metabolismo , Dibenzodioxinas Policloradas/análogos & derivados , Proteínas Quinases/metabolismo , Animais , Benzofuranos/análise , Encéfalo/efeitos dos fármacos , Encéfalo/fisiologia , Cálcio/farmacocinética , Citocromo P-450 CYP1A1/efeitos dos fármacos , Feminino , Isomerismo , Masculino , Neurônios/efeitos dos fármacos , Neurônios/enzimologia , Bifenilos Policlorados/análise , Dibenzodioxinas Policloradas/análise , Proteínas Quinases/efeitos dos fármacos , Transporte Proteico , Ratos , Ratos Long-Evans , Reprodutibilidade dos Testes , Medição de Risco , Poluentes do Solo/análise
9.
J Org Chem ; 66(16): 5329-32, 2001 Aug 10.
Artigo em Inglês | MEDLINE | ID: mdl-11485451

RESUMO

Tetramethyl- and hexamethyl-substituted [2.2]metacyclophane monoenes (10 and 11) are transformed into their corresponding trans-dimethyldihydroethanophenanthrenium dications (14(2+) and 15(2+)) in FSO(3)H x SbF(5) (4:1) and FSO(3)H x SbF(5) (1:1) with SO(2)ClF or SO(2) as the solvent; these 10 pi-dications are equivalent to the C-4/C-5 diprotonated dications of the 2,7-dimethyl derivative of trans-DMDHP, 3a. The trans-12c,12d-dimethyl-12c,12d-dihydrobenzo[e]pyrene (6) reacts with FSO(3)H/SO(2)ClF under surprisingly mild conditions to give initially a persistent diprotonated dication (6H(2)(2+)) and, subsequently, the oxidation dication (6(2+)); the 6(2+):6H(2)(2+) ratio reaches 4:1 after 1 week at low temperature. Protonation of the anti-metacyclophane (13) was also examined. Charge delocalization mode and tropicity in the resulting dications are gauged via detailed NMR studies at 500 MHz.


Assuntos
Hidrocarbonetos Aromáticos com Pontes/síntese química , Hidrocarbonetos Aromáticos com Pontes/química , Cátions/síntese química , Cátions/química , Espectroscopia de Ressonância Magnética , Metilação , Hidrocarbonetos Policíclicos Aromáticos/química
10.
Org Lett ; 3(11): 1709-11, 2001 May 31.
Artigo em Inglês | MEDLINE | ID: mdl-11405692

RESUMO

Synthesis of two novel dehydrobenzoannulene-dimethyldihydropyrene (DBA-DDP) hybrids has been achieved using a Pd/Cu cross-coupling strategy.

11.
Toxicol Sci ; 61(2): 321-30, 2001 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-11353141

RESUMO

The central nervous system is one of the target organs for polychlorinated biphenyls (PCBs). We measured the effects of maternal exposure of Long-Evans rats to a mixture of PCB congeners reconstituted according to the pattern found in human breast milk (reconstituted mixture, RM) on long-term potentiation (LTP) in two brain regions. Exposure of the dams via food started 50 days prior to mating and was terminated at birth. In the first experiment, adult male and female offspring were exposed maternally to 40 mg/kg of the RM or the commercial mixture Aroclor 1254 (A1254). LTP and paired-pulse inhibition were measured in slices of the visual cortex. In addition, the binding of [3H]MK-801 to the N-methyl-D-aspartate (NMDA) receptor-ion channel as well as the [3H]muscimol binding to the GABA-A receptor in membrane preparations from the occipital cortex and hippocampus were determined. LTP as well as [3H]MK-801 binding were significantly reduced in the cortex following PCB exposure, while [3H]MK-801 binding in the hippocampus was not affected. In a succeeding experiment, LTP was determined in cortical and hippocampal slices from rats at postnatal days 10 to 20, following exposure to 0, 5, or 40 mg/kg of the RM. Cortical LTP was significantly affected by the RM while no effects were seen in hippocampal LTP. Taking the two experiments together, PCB exposure significantly reduced LTP, as well as [3H]MK-801 binding, in the cortex and had no effect in the hippocampus. The LTP deficits can only partly be related to the reduction of binding sites to the NMDA receptor; other PCB-induced neurochemical changes have to be assumed.


Assuntos
Encéfalo/efeitos dos fármacos , Canais Iônicos/efeitos dos fármacos , Potenciação de Longa Duração/efeitos dos fármacos , Exposição Materna/efeitos adversos , Troca Materno-Fetal/efeitos dos fármacos , Troca Materno-Fetal/fisiologia , Plasticidade Neuronal/efeitos dos fármacos , Plasticidade Neuronal/fisiologia , Bifenilos Policlorados/toxicidade , Receptores de GABA-A/efeitos dos fármacos , Administração Oral , Análise de Variância , Animais , Animais Recém-Nascidos/metabolismo , Sítios de Ligação/efeitos dos fármacos , Encéfalo/crescimento & desenvolvimento , Encéfalo/metabolismo , Dieta , Maleato de Dizocilpina/antagonistas & inibidores , Maleato de Dizocilpina/metabolismo , Eletrofisiologia , Feminino , Hipocampo/efeitos dos fármacos , Hipocampo/embriologia , Hipocampo/metabolismo , Técnicas In Vitro , Canais Iônicos/metabolismo , Masculino , Muscimol/metabolismo , N-Metilaspartato/agonistas , N-Metilaspartato/farmacologia , Gravidez , Ratos , Ratos Long-Evans , Receptores de GABA-A/metabolismo , Receptores de N-Metil-D-Aspartato/efeitos dos fármacos , Receptores de N-Metil-D-Aspartato/metabolismo , Fatores de Tempo , Trítio , Córtex Visual/efeitos dos fármacos , Córtex Visual/embriologia , Córtex Visual/crescimento & desenvolvimento , Córtex Visual/metabolismo
12.
Toxicol Sci ; 60(2): 315-26, 2001 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-11248144

RESUMO

The developing nervous system has been identified as a potential target of pesticide exposure. Heptachlor is a cyclodiene pesticide that was widely used for many years, and for which inadvertent exposure to children and fetuses took place in the early 1980s; yet little is known regarding the developmental neurotoxicity of it and other cyclodienes. The aim of this study was to determine whether perinatal heptachlor exposure results in persistent alterations in nervous system function. Pregnant Sprague-Dawley dams were dosed from gestational day (GD) 12 to postnatal day (PND) 7, whereupon the rat pups were dosed directly until PND 21 (group A) or PND 42 (group B). Dose levels were 0, 0.03, 0.3, or 3 mg/kg/day, po. There were no dose-related effects on maternal weight, litter size, or pup growth. GABA(A) receptor binding (using [(35)S] tert-butylbicyclophosphorothionate; TBPS) and GABA-stimulated Cl- flux were evaluated in control and high-dose brain tissues taken on PND 7, 21, and 43. The B(max) values for [(35)S]-TBPS binding in brainstem, but not cortex, were decreased in female rats across all ages tested. There were no such changes in male rats, nor were K(D) values altered in either tissue or gender. GABA-stimulated Cl- flux was decreased in female cortex synaptoneurosomes only on PND 21. The ontogeny of the righting response (PND 2-5) was delayed in the high-dose females. All subsequent testing took place a week to months after dosing ceased. The functional observational battery (FOB) showed treatment-related, but not necessarily dose-related, changes in different aspects of the rat's reactivity and activity levels. Group-A rats also showed altered within-session habituation of motor activity. There were no heptachlor-related differences in motor activity following challenge with a range of chlordiazepoxide doses. Cognitive assessments were conducted in both groups of rats. There were no statistically significant differences among treatment groups in a one-trial passive avoidance test, although there was a trend toward less learning. In group B, rats (both sexes), heptachlor altered spatial learning in the Morris water maze during two weeks of daily training (2 trials/day). On probe trials, heptachlor-treated rats did not show significant preference for the correct quadrant (all dose groups in males, high dose in females). These rats did not show alterations on subsequent working-memory training (where the platform position was relearned each day). Thus, perinatal exposure to heptachlor produced neurochemical and persistent neurobehavioral changes, including alterations in spatial learning and memory.


Assuntos
Comportamento Animal/efeitos dos fármacos , Encéfalo/efeitos dos fármacos , Desenvolvimento Embrionário e Fetal/efeitos dos fármacos , Heptacloro/toxicidade , Inseticidas/toxicidade , Efeitos Tardios da Exposição Pré-Natal , Animais , Animais Recém-Nascidos , Peso Corporal/efeitos dos fármacos , Encéfalo/embriologia , Encéfalo/fisiopatologia , Química Encefálica , Cloretos/metabolismo , Feminino , Heptacloro/farmacocinética , Inseticidas/farmacocinética , Tamanho da Ninhada de Vivíparos/efeitos dos fármacos , Masculino , Gravidez , Ratos , Ratos Sprague-Dawley , Receptores de GABA/metabolismo , Distribuição Tecidual , Testes de Toxicidade , Ácido gama-Aminobutírico/farmacologia
13.
J Bacteriol ; 182(21): 6183-91, 2000 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11029441

RESUMO

The rfb region specifies the structure of lipopolysaccharide side chains that comprise the diverse gram-negative bacterial somatic (O) antigens. The rfb locus is adjacent to gnd, which is a polymorphic gene encoding 6-phosphogluconate dehydrogenase. To determine if rfb and gnd cotransfer, we sequenced gnd in five O55 and 13 O157 strains of Escherichia coli. E. coli O157:H7 has a gnd allele (allele A) that is only 82% identical to the gnd allele (allele D) of closely related E. coli O55:H7. In contrast, gnd alleles of E. coli O55 in distant lineages are >99.9% identical to gnd allele D. Though gnd alleles B and C in E. coli O157 that are distantly related to E. coli O157:H7 are more similar to allele A than to allele D, there are nucleotide differences at 4 to 6% of their sites. Alleles B and C can be found in E. coli O157 in different lineages, but we have found allele A only in E. coli O157 belonging to the DEC5 lineage. DNA 3' to the O55 gnd allele in diverse E. coli lineages has sequences homologous to tnpA of the Salmonella enterica serovar Typhimurium IS200 element, E. coli Rhs elements (including an H-rpt gene), and portions of the O111 and O157 rfb regions. We conclude that rfb and gnd cotransferred into E. coli O55 and O157 in widely separated lineages and that recombination was responsible for recent antigenic shifts in the emergence of pathogenic E. coli O55 and O157.


Assuntos
Proteínas de Bactérias/genética , Escherichia coli/genética , Genoma Bacteriano , Antígenos O/genética , Fosfogluconato Desidrogenase/genética , Alelos , Sequência de Bases , Evolução Biológica , Clonagem Molecular , Escherichia coli/fisiologia , Escherichia coli O157/genética , Escherichia coli O157/fisiologia , Recombinação Genética , Homologia de Sequência do Ácido Nucleico , Fatores de Transcrição/genética
14.
Nat Genet ; 25(3): 333-7, 2000 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10888885

RESUMO

Expression profiling using DNA microarrays holds great promise for a variety of research applications, including the systematic characterization of genes discovered by sequencing projects. To demonstrate the general usefulness of this approach, we recently obtained expression profiles for nearly 300 Saccharomyces cerevisiae deletion mutants. Approximately 8% of the mutants profiled exhibited chromosome-wide expression biases, leading to spurious correlations among profiles. Competitive hybridization of genomic DNA from the mutant strains and their isogenic parental wild-type strains showed they were aneuploid for whole chromosomes or chromosomal segments. Expression profile data published by several other laboratories also suggest the use of aneuploid strains. In five separate cases, the extra chromosome harboured a close homologue of the deleted gene; in two cases, a clear growth advantage for cells acquiring the extra chromosome was demonstrated. Our results have implications for interpreting whole-genome expression data, particularly from cells known to suffer genomic instability, such as malignant or immortalized cells.


Assuntos
Aneuploidia , Cromossomos Fúngicos , Saccharomyces cerevisiae/genética , DNA Fúngico/análise , Expressão Gênica , Análise de Sequência com Séries de Oligonucleotídeos/métodos
15.
Mol Cell Biol ; 20(13): 4948-57, 2000 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-10848619

RESUMO

In the ribosomal DNA of Saccharomyces cerevisiae, sequences in the nontranscribed spacer 3' of the 35S ribosomal RNA gene are important to the polar arrest of replication forks at a site called the replication fork barrier (RFB) and also to the cis-acting, mitotic hyperrecombination site called HOT1. We have found that the RFB and HOT1 activity share some but not all of their essential sequences. Many of the mutations that reduce HOT1 recombination also decrease or eliminate fork arrest at one of two closely spaced RFB sites, RFB1 and RFB2. A simple model for the juxtaposition of RFB and HOT1 sequences is that the breakage of strands in replication forks arrested at RFB stimulates recombination. Contrary to this model, we show here that HOT1-stimulated recombination does not require the arrest of forks at the RFB. Therefore, while HOT1 activity is independent of replication fork arrest, HOT1 and RFB require some common sequences, suggesting the existence of a common trans-acting factor(s).


Assuntos
Replicação do DNA , DNA Ribossômico/química , Recombinação Genética , Proteínas de Saccharomyces cerevisiae , Fatores de Transcrição/genética , DNA Fúngico/química , DNA Fúngico/genética , DNA Fúngico/metabolismo , DNA Ribossômico/genética , DNA Ribossômico/metabolismo , Desoxirribonuclease HindIII/genética , Desoxirribonuclease HindIII/metabolismo , Desoxirribonucleases de Sítio Específico do Tipo II/genética , Desoxirribonucleases de Sítio Específico do Tipo II/metabolismo , Mutação , Saccharomyces cerevisiae/genética
16.
Infect Immun ; 68(3): 1400-7, 2000 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-10678953

RESUMO

The mechanisms used by Shiga toxin (Stx)-producing Escherichia coli to adhere to epithelial cells are incompletely understood. Two cosmids from an E. coli O157:H7 DNA library contain an adherence-conferring chromosomal gene encoding a protein similar to iron-regulated gene A (IrgA) of Vibrio cholerae (M. B. Goldberg, S. A. Boyko, J. R. Butterton, J. A. Stoebner, S. M. Payne, and S. B. Calderwood, Mol. Microbiol. 6:2407-2418, 1992). We have termed the product of this gene the IrgA homologue adhesin (Iha), which is encoded by iha. Iha is 67 kDa in E. coli O157:H7 and 78 kDa in laboratory E. coli and is structurally unlike other known adhesins. DNA adjacent to iha contains tellurite resistance loci and is conserved in structure in distantly related pathogenic E. coli, but it is absent from nontoxigenic E. coli O55:H7, sorbitol-fermenting Stx-producing E. coli O157:H-, and laboratory E. coli. We have termed this region the tellurite resistance- and adherence-conferring island. We conclude that Iha is a novel bacterial adherence-conferring protein and is contained within an E. coli chromosomal island of conserved structure. Pathogenic E. coli O157:H7 has only recently acquired this island.


Assuntos
Adesinas Bacterianas/genética , Aderência Bacteriana , Cromossomos Bacterianos , Escherichia coli O157/genética , Sequência de Aminoácidos , Escherichia coli O157/classificação , Escherichia coli O157/fisiologia , Dados de Sequência Molecular
17.
Science ; 285(5429): 901-6, 1999 Aug 06.
Artigo em Inglês | MEDLINE | ID: mdl-10436161

RESUMO

The functions of many open reading frames (ORFs) identified in genome-sequencing projects are unknown. New, whole-genome approaches are required to systematically determine their function. A total of 6925 Saccharomyces cerevisiae strains were constructed, by a high-throughput strategy, each with a precise deletion of one of 2026 ORFs (more than one-third of the ORFs in the genome). Of the deleted ORFs, 17 percent were essential for viability in rich medium. The phenotypes of more than 500 deletion strains were assayed in parallel. Of the deletion strains, 40 percent showed quantitative growth defects in either rich or minimal medium.


Assuntos
Deleção de Genes , Genes Essenciais , Genoma Fúngico , Fases de Leitura Aberta , Saccharomyces cerevisiae/genética , Meios de Cultura , Regulação Fúngica da Expressão Gênica , Marcação de Genes , Genes Fúngicos , Fenótipo , Reação em Cadeia da Polimerase , Recombinação Genética , Saccharomyces cerevisiae/crescimento & desenvolvimento
18.
Toxicology ; 142(1): 57-68, 1999 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-10647918

RESUMO

Chlorotriazine herbicides disrupt luteinizing hormone (LH) release in female rats following in vivo exposure. Although the mechanism of action is unknown, significant evidence suggests that inhibition of LH release by chlorotriazines may be mediated by effects in the central nervous system. GABA(A) receptors are important for neuronal regulation of gonadotropin releasing hormone and LH release. The ability of chlorotriazine herbicides to interact with GABA(A) receptors was examined by measuring their effects on [3H]muscimol, [3H]Ro15-4513 and [35S]tert-butylbicyclophosphorothionate (TBPS) binding to rat cortical membranes. Cyanazine (1-400 microM) inhibited [3H]Ro15-4513 binding with an IC50 of approximately 105 microM (n=4). Atrazine (1-400 microM) also inhibited [3H]Ro15-4513 binding, but was less potent than cyanazine (IC50 = 305 microM). However, the chlorotriazine metabolites diaminochlorotriazine, 2-amino-4-chloro-6-ethylamino-s-triazine and 2-amino-4-chloro-6-isopropylamino-s-triazine were without significant effect on [3H]Ro15-4513 binding. Cyanazine and the other chlorotriazines were without effect on [3H]muscimol or [35S]TBPS binding. To examine whether cyanazine altered GABA(A) receptor function, GABA-stimulated 36Cl- flux into synaptoneurosomes was examined. Cyanazine (50-100 microM) alone did not significantly decrease GABA-stimulated 36Cl- flux. Diazepam (10 microM) and pentobarbital (100 microM) potentiated GABA-stimulated 36Cl- flux to 126 and 166% of control, respectively. At concentrations of 50 and 100 microM, cyanazine decreased potentiation by diazepam to 112 and 97% of control, respectively, and decreased potentiation by pentobarbital to 158 and 137% of control (n = 6). Interestingly, at lower concentrations (5 microM), cyanazine shifted the EC50 for GABA-stimulated 36Cl- flux into synaptoneurosomes from 28.9 to 19.4 microM, respectively (n = 5). These results suggest that cyanazine modulates benzodiazepine, but not the muscimol (GABA receptor site) or TBPS (Cl- channel), binding sites on GABA(A) receptors. Furthermore, at low concentrations, cyanazine may slightly enhance function of GABA(A) receptors, but at higher concentrations, cyanazine antagonizes GABA(A) receptor function and in particular antagonizes the positive modulatory effects of diazepam and pentobarbital.


Assuntos
Córtex Cerebral/efeitos dos fármacos , Herbicidas/toxicidade , Receptores de GABA-A/metabolismo , Triazinas/toxicidade , Animais , Azidas/metabolismo , Azidas/farmacologia , Benzodiazepinas/metabolismo , Benzodiazepinas/farmacologia , Sítios de Ligação , Compostos Bicíclicos Heterocíclicos com Pontes/metabolismo , Compostos Bicíclicos Heterocíclicos com Pontes/farmacologia , Córtex Cerebral/metabolismo , Canais de Cloreto/metabolismo , Cloro/metabolismo , Agonistas GABAérgicos/metabolismo , Agonistas GABAérgicos/farmacologia , Herbicidas/metabolismo , Masculino , Muscimol/metabolismo , Muscimol/farmacologia , Radioisótopos , Ratos , Ratos Long-Evans , Sinaptossomos/efeitos dos fármacos , Sinaptossomos/metabolismo , Triazinas/metabolismo
19.
Methods Mol Med ; 22: 157-62, 1999.
Artigo em Inglês | MEDLINE | ID: mdl-21380831

RESUMO

The free-radical gas nitric oxide (NO) recently has been identified as an important biological messenger molecule in both the central and peripheral nervous system. NO is generated by the enzyme NO synthase (NOS) by the oxidation of the amino acid L: -arginine. As a dissolved gas, NO is an unusual neurotransmitter. It is not packaged in synaptic vesicles and released by exocytosis upon membrane depolarization, but rather diffuses from its site of production to surrounding neurons where it acts directly on specific intracellular targets. The activity of NO terminates when it chemically reacts with a target substrate. Although all of the targets of NO are not yet known, NO can bind to the iron associated with heme groups or result in nitrosylation of proteins, leading to conformational changes. One of the best-described targets of NO in the central nervous system is the heme-containing protein guanylyl cyclase. NO is a relatively long-lived free radical and does not react readily with most cellular components. This allows it to diffuse to several surrounding neurons and integrate neuronal activity on a local scale. NO is involved in a number of physiological processes including morphogenesis and synaptic plasticity. However, under conditions in which NOS is overstimulated, excessive formation of NO may mediate cell injury in a variety of disorders of the nervous system that result in neurodegeneration (1).

20.
Environ Health Perspect ; 106(8): 479-86, 1998 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-9681975

RESUMO

Polychlorinated biphenyls (PCBs) are persistent contaminants that exist as complex mixtures in the environment. One problem faced by risk assessors is that the possible interactive effects of specific PCB congeners and related chemicals found in environmental and biological samples have not been systematically investigated. Some PCBs perturb Ca2+ homeostasis and cause protein kinase C (PKC) translocation in neuronal cell cultures and in brain homogenate preparations at concentrations where no cytotoxicity is observed, and these systems are necessary for the growth and normal functioning of neurons. The changes in second messenger systems appear to be associated with the extent of noncoplanarity of the PCB molecule. We studied the interactive effects of selected PCB congeners, a PCB metabolite, and a dioxin on PKC translocation, as determined by [3H]phorbol ester binding in cerebellar granule cells. The binary combinations included coplanar and noncoplanar PCB congeners or PCB congeners with 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)/PCB metabolite. In addition, we tested the interactive effects of several PCB congeners (three or more) found in environmental samples such as human milk and blood, contaminated fish, and brain samples from PCB-treated animals. The results indicated that 1) the coplanar congener [3,3',4, 4'-tetrachlorobiphenyl (TeCB)] did not alter the in vitro activity of the noncoplanar (2,2',5,5'-TeCB) or coplanar [4, 4'-dichlorobiphenyl (DCB)] congeners; 2) binary mixtures of active PCB congeners (2,2',4,4'-TeCB and 2,2'-DCB; 2,2'-DCB and 3,5-DCB; 2,2',3,5',6-PeCB and 2,2',4,4',5-PeCB) interact in a dose-additive manner; 3) TCDD did not alter the activity of either coplanar (3,3', 4,4'-TeCB) or noncoplanar (2,2',5,5'-TeCB) congeners; 4) the interaction between the parent PCB congener and hydroxy metabolite of PCB is additive; 5) PCB congener mixtures at the ratios found in environmental samples are biologically active; and 6) there was no indication of synergism in any of the combinations studied. These results suggest that the biological effects of binary mixtures of PCB congeners fit a dose-additive model, indicating that there is a specific site of action for these PCB congeners which is independent of the aryl hydrocarbon receptor. Environmental mixtures contain mostly noncoplanar PCB congeners, and because they appear to be biologically active, the potential human health risk by this group of chemicals should be considered in the risk assessment of PCBs.


Assuntos
Cerebelo/efeitos dos fármacos , Dioxinas/farmacologia , Poluentes Ambientais/farmacologia , Dibutirato de 12,13-Forbol/metabolismo , Bifenilos Policlorados/farmacologia , Animais , Animais Recém-Nascidos , Células Cultivadas , Cerebelo/metabolismo , Interações Medicamentosas , Feminino , Ratos , Ratos Long-Evans
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