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1.
Sci Total Environ ; 932: 173000, 2024 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-38719050

RESUMO

Ocean acidification and warming affect marine ecosystems from the molecular scale in organismal physiology to broad alterations of ecosystem functions. However, knowledge of their combined effects on tropical-subtropical intertidal species remains limited. Pushing the environmental range of marine species away from the optimum initiates stress impacting biochemical metabolic characteristics, with consequences on lipid-associated and enzyme biochemistry. This study investigates lipid-associated fatty acids (FAs) and enzyme activities involved in biomineralization of the tropical-subtropical starfish Aquilonastra yairi in response to projected near-future global change. The starfish were acclimatized to two temperature levels (27 °C, 32 °C) crossed with three pCO2 concentrations (455 µatm, 1052 µatm, 2066 µatm). Total lipid (ΣLC) and FAs composition were unaffected by combined elevated temperature and pCO2, but at elevated temperature, there was an increase in ΣLC, SFAs (saturated FAs) and PUFAs (polyunsaturated FAs), and a decrease in MUFAs (monounsaturated FAs). However, temperature was the sole factor to significantly alter SFAs composition. Positive parabolic responses of Ca-ATPase and Mg-ATPase enzyme activities were detected at 27 °C with elevated pCO2, while stable enzyme activities were observed at 32 °C with elevated pCO2. Our results indicate that the lipid-associated biochemistry of A. yairi is resilient and capable of coping with near-future ocean acidification and warming. However, the calcification-related enzymes Ca-ATPase and Mg-ATPase activity appear to be more sensitive to pCO2/pH changes, leading to vulnerability concerning the skeletal structure.


Assuntos
Água do Mar , Estrelas-do-Mar , Animais , Água do Mar/química , Concentração de Íons de Hidrogênio , Estrelas-do-Mar/fisiologia , Aquecimento Global , Dióxido de Carbono , Oceanos e Mares , Mudança Climática , Ácidos Graxos/metabolismo , Metabolismo dos Lipídeos , Acidificação dos Oceanos
2.
Sci Rep ; 13(1): 5042, 2023 Mar 28.
Artigo em Inglês | MEDLINE | ID: mdl-36977704

RESUMO

Many lagoons surrounded by reefs are partially or completely infilled with reef-derived detrital carbonate sediment. Sediment deposits in such restricted environments are archives of prevailing environmental conditions during lagoon infill. For Indonesia, no paleoenvironmental reconstructions based on Holocene lagoon sediments exist. Here we analyze the sedimentary record obtained from five percussion cores penetrating 10 m into the unconsolidated subsurface of a reef island in the Spermonde Archipelago, Indonesia. The combined compositional, textural and chronostratigraphic analyses reveal that the sedimentary infill of the lagoon underlying the island, starting 6900 years cal BP, was interrupted between 5800 and 4400 years cal BP, when sea level was ~ 0.5 m higher than at present, and monsoon intensity was lower. After the intensity of the monsoons increased to modern levels, and sea level dropped to its present position, lagoonal sedimentation was re-initiated and created the foundation for an island that built up since 3000 years cal BP. Our study provides the first geological evidence for the strong sensitivity of detrital carbonate systems in Indonesia to fluctuations in sea level and dominant wind direction. It thus sheds light on how changing environmental conditions in the context of global warming could affect the morphological development of reef systems, and thereby also habitable coastal areas.

3.
Sci Rep ; 12(1): 14771, 2022 08 30.
Artigo em Inglês | MEDLINE | ID: mdl-36042226

RESUMO

Studies on the effects of global marine plastic pollution have largely focused on physiological responses of few organism groups (e.g., corals, fishes). Here, we report the first observation of polymer nanoparticles being incorporated into the calcite skeleton of a large benthic foraminifera (LBF), a significant contributor to global carbonate production. While previous work on LBF has documented selectivity in feeding behaviour and a high degree of specialization regarding skeletal formation, in this study, abundant cases of nanoplastic encrustation into the calcite tests were observed. Nanoplastic incorporation was associated with formation of new chambers, in conjunction with rapid nanoplastic ingestion and subsequent incomplete egestion. Microalgae presence in nanoplastic treatments significantly increased the initial feeding response after 1 day, but regardless of microalgae presence, nanoplastic ingestion was similar after 6 weeks of chronic exposure. While ~ 40% of ingesting LBF expelled all nanoplastics from their cytoplasm, nanoplastics were still attached to the test surface and subsequently encrusted by calcite. These findings highlight the need for further investigation regarding plastic pollution impacts on calcifying organisms, e.g., the function of LBF as potential plastic sinks and alterations in structural integrity of LBF tests that will likely have larger ecosystem-level impacts on sediment production.


Assuntos
Foraminíferos , Microalgas , Poluentes Químicos da Água , Carbonato de Cálcio , Ecossistema , Microplásticos , Plásticos , Esqueleto
4.
Ecol Evol ; 12(3): e8633, 2022 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-35342582

RESUMO

Marine symbioses are integral to the persistence of ecosystem functioning in coral reefs. Solitary corals of the species Heteropsammia cochlea and Heterocyathus aequicostatus have been observed to live in symbiosis with the sipunculan worm Aspidosiphon muelleri muelleri, which inhabits a cavity within the coral, in Zanzibar (Tanzania). The symbiosis of these photosymbiotic corals enables the coral holobiont to move, in fine to coarse unconsolidated substrata, a process termed as "walking." This allows the coral to escape sediment cover in turbid conditions which is crucial for these light-dependent species. An additional commensalistic symbiosis of this coral-worm holobiont is found between the Aspidosiphon worm and the cryptoendolithic bivalve Jousseaumiella sp., which resides within the cavity of the coral skeleton. To understand the morphological alterations caused by these symbioses, interspecific relationships, with respect to the carbonate structures between these three organisms, are documented using high-resolution imaging techniques (scanning electron microscopy and µCT scanning). Documenting multi-layered symbioses can shed light on how morphological plasticity interacts with environmental conditions to contribute to species persistence.

5.
PeerJ ; 10: e12785, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35116197

RESUMO

Ecosystem Design (ED) is an approach for constructing habitats that places human needs for ecosystem services at the center of intervention, with the overarching goal of establishing self-sustaining habitats which require limited management. This concept was originally developed for use in mangrove ecosystems, and is understandably controversial, as it markedly diverges from other protection approaches that assign human use a minor priority or exclude it. However, the advantage of ED lies within the considered implementation of these designed ecosystems, thus preserving human benefits from potential later disturbances. Here, we outline the concept of ED in tropical carbonate depositional systems and discuss potential applications to aid ecosystem services such as beach nourishment and protection of coastlines and reef islands at risk from environmental and climate change, CO2 sequestration, food production, and tourism. Biological carbonate sediment production is a crucial source of stability of reef islands and reef-rimmed coastlines. Careful implementation of designed carbonate depositional ecosystems could help counterbalance sea-level rise and manage documented erosion effects of coastal constructions. Importantly, adhering to the core ethos of ED, careful dynamic assessments which provide a balanced approach to maximizing ecosystem services (e.g., carbonate production), should identify and avoid any potential damages to existing functioning ecosystems.


Assuntos
Recifes de Corais , Ecossistema , Humanos , Conservação dos Recursos Naturais , Carbonatos , Mudança Climática
6.
Environ Sci Pollut Res Int ; 28(28): 37882-37893, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-33718998

RESUMO

Microplastics have been detected on beaches and in the ocean from surface habitats to the deep-sea. Microplastics can be mistaken for food items by marine organisms, posing a potential risk for bioaccumulation and biomagnification in the food chain. Our understanding of microplastic pollution effects on ecosystem and physiological processes of coral reefs is still limited. This study contributes to the understanding of effects of microplastic pollution on skeletal precipitation of hermatypic corals. In a five month aquarium-based experiment, specimens of four tropical species were temporarily exposed to high concentrations (ca. 0.5 g L-1) of polyethylene terephthalate (PET) microplastic particles (< 500 µm). The coral specimens all survived this treatment and show skeletal growth. The skeletal material produced during the experiment, however, incorporated plastic particles and plastic fibres in the aragonitic structure. Long-term consequences of such inclusions on skeletal properties such as stability are yet unknown.


Assuntos
Antozoários , Poluentes Químicos da Água , Animais , Ecossistema , Monitoramento Ambiental , Laboratórios , Microplásticos , Plásticos , Poluentes Químicos da Água/análise
7.
Sci Adv ; 7(2)2021 01.
Artigo em Inglês | MEDLINE | ID: mdl-33523983

RESUMO

The combination of thermal stress and ocean acidification (OA) can more negatively affect coral calcification than an individual stressors, but the mechanism behind this interaction is unknown. We used two independent methods (microelectrode and boron geochemistry) to measure calcifying fluid pH (pHcf) and carbonate chemistry of the corals Pocillopora damicornis and Stylophora pistillata grown under various temperature and pCO2 conditions. Although these approaches demonstrate that they record pHcf over different time scales, they reveal that both species can cope with OA under optimal temperatures (28°C) by elevating pHcf and aragonite saturation state (Ωcf) in support of calcification. At 31°C, neither species elevated these parameters as they did at 28°C and, likewise, could not maintain substantially positive calcification rates under any pH treatment. These results reveal a previously uncharacterized influence of temperature on coral pHcf regulation-the apparent mechanism behind the negative interaction between thermal stress and OA on coral calcification.

8.
PLoS One ; 13(9): e0202887, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30208050

RESUMO

Coral reefs persist in an accretion-erosion balance, which is critical for understanding the natural variability of sediment production, reef accretion, and their effects on the carbonate budget. Bioerosion (i.e. biodegradation of substrate) and encrustation (i.e. calcified overgrowth on substrate) influence the carbonate budget and the ecological functions of coral reefs, by substrate formation/consolidation/erosion, food availability and nutrient cycling. This study investigates settlement succession and carbonate budget change by bioeroding and encrusting calcifying organisms on experimentally deployed coral substrates (skeletal fragments of Stylophora pistillata branches). The substrates were deployed in a marginal coral reef located in the Gulf of Papagayo (Costa Rica, Eastern Tropical Pacific) for four months during the northern winter upwelling period (December 2013 to March 2014), and consecutively sampled after each month. Due to the upwelling environmental conditions within the Eastern Tropical Pacific, this region serves as a natural laboratory to study ecological processes such as bioerosion, which may reflect climate change scenarios. Time-series analyses showed a rapid settlement of bioeroders, particularly of lithophagine bivalves of the genus Lithophaga/Leiosolenus (Dillwyn, 1817), within the first two months of exposure. The observed enhanced calcium carbonate loss of coral substrate (>30%) may influence seawater carbon chemistry. This is evident by measurements of an elevated seawater pH (>8.2) and aragonite saturation state (Ωarag >3) at Matapalo Reef during the upwelling period, when compared to a previous upwelling event observed at a nearby site in distance to a coral reef (Marina Papagayo). Due to the resulting local carbonate buffer effect of the seawater, an influx of atmospheric CO2 into reef waters was observed. Substrates showed no secondary cements in thin-section analyses, despite constant seawater carbonate oversaturation (Ωarag >2.8) during the field experiment. Micro Computerized Tomography (µCT) scans and microcast-embeddings of the substrates revealed that the carbonate loss was primarily due to internal macrobioerosion and an increase in microbioerosion. This study emphasizes the interconnected effects of upwelling and carbonate bioerosion on the reef carbonate budget and the ecological turnovers of carbonate producers in tropical coral reefs under environmental change.


Assuntos
Recifes de Corais , Clima Tropical , Animais , Bivalves/fisiologia , Carbonato de Cálcio/análise , Conservação dos Recursos Naturais , Nutrientes/análise , Água do Mar/química , Fatores de Tempo , Microtomografia por Raio-X
9.
PLoS One ; 13(9): e0202746, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30208057

RESUMO

In order to help predict the effects of anthropogenic stressors on shallow water carbonate environments, it is important to focus research on regions containing natural oceanographic gradients, particularly with respect to interactions between oceanography and ecologically sensitive carbonate producers. The Galápagos Archipelago, an island chain in the eastern equatorial Pacific, spans a natural nutrient, pH, and temperature gradient due to the interaction of several major ocean currents. Further, the region is heavily impacted by the El Niño-Southern Oscillation (ENSO) and the Galápagos exhibited widespread coral bleaching and degradation following the strong ENSO events of 1982-1983 and 1997-1998. These findings are coupled with reports of unusually low abundances of time-averaged benthic foraminiferal assemblages throughout the region. Foraminifera, shelled single-celled protists, are sensitive to environmental change and rapidly respond to alterations to their surrounding environment, making them ideal indicator species for the study of reef water quality and health. Here, statistical models and analyses were used to compare modern shallow water benthic foraminiferal assemblages from 19 samples spanning the Galápagos Archipelago to predominant oceanographic parameters at each collection site. Fisher α diversity indices, Ternary diagrams, Canonical Correspondence Analysis, regression tree analysis and FORAM-Index (FI; a single metric index for evaluating water quality associated with reef development) implied a combined impact from ENSO and upwelling from Equatorial Undercurrent (EUC) waters to primarily impact foraminiferal abundances and drive assemblage patterns throughout the archipelago. For instance, repeated ENSO temperature anomalies might be responsible for low foraminiferal density, while chronically high nutrients and low aragonite saturation and low pH-induced by EUC upwelling and La Niña anomalies-likely inhibited post-ENSO recovery, and caused foraminiferal assemblages to exhibit a heterotrophic dominance in the southern archipelago. What resulted are low FI values in the southern collection sites, indicating environments not conducive to endosymbiont development and/or recovery.


Assuntos
Foraminíferos/crescimento & desenvolvimento , Nutrientes/química , Água do Mar/química , Clorofila A/análise , Análise por Conglomerados , Recifes de Corais , Equador , El Niño Oscilação Sul , Sedimentos Geológicos/química , Concentração de Íons de Hidrogênio , Modelos Estatísticos , Temperatura
10.
J Proteome Res ; 17(6): 2060-2071, 2018 06 01.
Artigo em Inglês | MEDLINE | ID: mdl-29671321

RESUMO

Chronic exposure to ocean acidification and elevated sea-surface temperatures pose significant stress to marine ecosystems. This in turn necessitates costly acclimation responses in corals in both the symbiont and host, with a reorganization of cell metabolism and structure. A large-scale untargeted metabolomics approach comprising gas chromatography mass spectrometry (GC-MS) and ultraperformance liquid chromatography coupled to high resolution mass spectrometry (UPLC-MS) was applied to profile the metabolite composition of the soft coral Sarcophyton ehrenbergi and its dinoflagellate symbiont. Metabolite profiling compared ambient conditions with response to simulated climate change stressors and with the sister species, S. glaucum. Among ∼300 monitored metabolites, 13 metabolites were modulated. Incubation experiments providing four selected upregulated metabolites (alanine, GABA, nicotinic acid, and proline) in the culturing water failed to subside the bleaching response at temperature-induced stress, despite their known ability to mitigate heat stress in plants or animals. Thus, the results hint to metabolite accumulation (marker) during heat stress. This study provides the first detailed map of metabolic pathways transition in corals in response to different environmental stresses, accounting for the superior thermal tolerance of S. ehrenbergi versus S. glaucum, which can ultimately help maintain a viable symbiosis and mitigate against coral bleaching.


Assuntos
Antozoários/metabolismo , Dinoflagellida/metabolismo , Resposta ao Choque Térmico , Metaboloma , Metabolômica/métodos , Animais , Cromatografia Líquida , Cromatografia Gasosa-Espectrometria de Massas , Resposta ao Choque Térmico/fisiologia , Metaboloma/fisiologia , Estresse Fisiológico/fisiologia , Simbiose
11.
Sci Rep ; 8(1): 3524, 2018 02 23.
Artigo em Inglês | MEDLINE | ID: mdl-29476118

RESUMO

The proliferation of key marine ecological engineers and carbonate producers often relies on their association with photosymbiotic algae. Evaluating stress responses of these organisms is important to predict their fate under future climate projections. Physiological approaches are limited in their ability to resolve the involved molecular mechanisms and attribute stress effects to the host or symbiont, while probing and partitioning of proteins cannot be applied in organisms where the host and symbiont are small and cannot be physically separated. Here we apply a label-free quantitative proteomics approach to detect changes of proteome composition in the diatom-bearing benthic foraminifera Amphistegina gibbosa experimentally exposed to three thermal-stress scenarios. We developed a workflow for protein extraction from less than ten specimens and simultaneously analysed host and symbiont proteomes. Despite little genomic data for the host, 1,618 proteins could be partially assembled and assigned. The proteomes revealed identical pattern of stress response among stress scenarios as that indicated by physiological measurements, but allowed identification of compartment-specific stress reactions. In the symbiont, stress-response and proteolysis-related proteins were up regulated while photosynthesis-related proteins declined. In contrast, host homeostasis was maintained through chaperone up-regulation associated with elevated proteosynthesis and proteolysis, and the host metabolism shifted to heterotrophy.


Assuntos
Diatomáceas/genética , Foraminíferos/genética , Proteoma/genética , Proteômica/métodos , Estresse Fisiológico , Organismos Aquáticos , Calcificação Fisiológica/genética , Recifes de Corais , Diatomáceas/crescimento & desenvolvimento , Diatomáceas/metabolismo , Ecossistema , Foraminíferos/crescimento & desenvolvimento , Foraminíferos/metabolismo , Regulação da Expressão Gênica , Ontologia Genética , Temperatura Alta , Anotação de Sequência Molecular , Oceanos e Mares , Fotossíntese/genética , Proteoma/classificação , Proteoma/metabolismo , Simbiose
12.
Molecules ; 22(12)2017 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-29232862

RESUMO

The effect of three oxylipin analogues, a terpenoid intermediate and wounding on the secondary metabolism of the soft corals Sarcophyton glaucum and Lobophyton pauciflorum was assessed. Examined oxylipins included prostaglandin (PG-E1), methyl jasmonate (MeJA), and arachidonic acid (AA) in addition to the diterpene precursor geranylgeranylpyrophosphate (GGP). Post-elicitation, metabolites were extracted from coral heads and analyzed via UPLC-MS followed by multivariate data analyses. Both supervised and unsupervised data analyses were used for sample classification. Multivariate data analysis revealed clear segregation of PG-E1 and MeJA elicited S. glaucum at 24 and 48 h post elicitation from other elicitor samples and unelicited control group. PG-E1 was found more effective in upregulating S. glaucum terpene/sterol levels compared to MeJA. Metabolites showing upregulation in S. glaucum include campestene-triol and a cembranoid, detected at ca. 30- and 2-fold higher levels compared to unelicited corals. Such an elicitation effect was less notable in the other coral species L. pauciflorum, suggesting a differential oxylipin response in soft corals. Compared to MeJA and PG, no elicitation effect was observed for GGP, AA or wounding on the metabolism of either coral species.


Assuntos
Antozoários/metabolismo , Oxilipinas/farmacologia , Metabolismo Secundário/efeitos dos fármacos , Acetatos/química , Acetatos/farmacologia , Alprostadil/química , Alprostadil/farmacologia , Animais , Antozoários/efeitos dos fármacos , Ácido Araquidônico/química , Ácido Araquidônico/farmacologia , Cromatografia Líquida de Alta Pressão , Ciclopentanos/química , Ciclopentanos/farmacologia , Espectrometria de Massas , Oxilipinas/química , Análise de Componente Principal , Terpenos/química , Terpenos/farmacologia
13.
Mar Drugs ; 15(7)2017 Jul 04.
Artigo em Inglês | MEDLINE | ID: mdl-28677625

RESUMO

Sarcophyton sp. soft corals are rich in cembranoid diterpenes, which represent the main chemical defense of corals against their natural predators in addition to their myriad biological effects in humans. Quantitative NMR (qNMR) was applied for assessing the diterpene variation in 16 soft coral specimens in the context of their genotype, origin, and growing habitat. qNMR revealed high diterpene levels in Sarcophyton sp. compared to Sinularia and Lobophyton, with (ent)sarcophines as major components (17-100 µg/mg) of the coral tissues. Multivariate data analysis was employed to classify samples based on the quantified level of diterpenes, and compared to the untargeted NMR approach. Results revealed that qNMR provided a stronger classification model of Sarcophyton sp. than untargeted NMR fingerprinting. Additionally, cytotoxicity of soft coral crude extracts was assessed against androgen-dependent prostate cancer cell lines (PC3) and androgen-independent colon cancer cell lines (HT-29), with IC50 values ranging from 10-60 µg/mL. No obvious correlation between the extracts' IC50 values and their diterpene levels was found using either Spearman or Pearson correlations. This suggests that this type of bioactivity may not be easily predicted by NMR metabolomics in soft corals, or is not strongly correlated to measured diterpene levels.


Assuntos
Antozoários/química , Antineoplásicos/farmacologia , Diterpenos/farmacologia , Animais , Antineoplásicos/química , Linhagem Celular Tumoral , Diterpenos/química , Humanos , Concentração Inibidora 50 , Espectroscopia de Ressonância Magnética , Estrutura Molecular , Análise Multivariada
14.
PLoS One ; 12(7): e0179753, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28683118

RESUMO

Shallow marine ecosystems naturally experience fluctuating physicochemical conditions across spatial and temporal scales. Widespread coral-bleaching events, induced by prolonged heat stress, highlight the importance of how the duration and frequency of thermal stress influence the adaptive physiology of photosymbiotic calcifiers. Large benthic foraminifera harboring algal endosymbionts are major tropical carbonate producers and bioindicators of ecosystem health. Like corals, they are sensitive to thermal stress and bleach at temperatures temporarily occurring in their natural habitat and projected to happen more frequently. However, their thermal tolerance has been studied so far only by chronic exposure, so how they respond under more realistic episodic heat-event scenarios remains unknown. Here, we determined the physiological responses of Amphistegina gibbosa, an abundant western Atlantic foraminifera, to four different treatments--control, single, episodic, and chronic exposure to the same thermal stress (32°C)--in controlled laboratory cultures. Exposure to chronic thermal stress reduced motility and growth, while antioxidant capacity was elevated, and photosymbiont variables (coloration, oxygen-production rates, chlorophyll a concentration) indicated extensive bleaching. In contrast, single- and episodic-stress treatments were associated with higher motility and growth, while photosymbiont variables remained stable. The effects of single and episodic heat events were similar, except for the presumable occurrence of reproduction, which seemed to be suppressed by both episodic and chronic stress. The otherwise different responses between treatments with thermal fluctuations and chronic stress indicate adaptation to thermal peaks, but not to chronic exposure expected to ensue when baseline temperatures are elevated by climate change. This firstly implies that marine habitats with a history of fluctuating thermal stress potentially support resilient physiological mechanisms among photosymbiotic organisms. Secondly, there seem to be temporal constraints related to heat events among coral reef environments and reinforces the importance of temporal fluctuations in stress exposure in global-change studies and projections.


Assuntos
Adaptação Fisiológica , Antozoários/fisiologia , Clorófitas/fisiologia , Modelos Estatísticos , Estresse Fisiológico , Animais , Antioxidantes/metabolismo , Clorofila/biossíntese , Clorofila A , Mudança Climática , Recifes de Corais , Ecossistema , Temperatura Alta , Simbiose/fisiologia
15.
Sci Rep ; 7(1): 3555, 2017 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-28620203

RESUMO

The reconstruction of pre-depositional cooking treatments used by prehistoric coastal populations for processing aquatic faunal resources is often difficult in archaeological shell midden assemblages. Besides limiting our knowledge of various social, cultural, economic and technological aspects of shell midden formation, unknown pre-depositional cooking techniques can also introduce large errors in palaeoclimate reconstructions as they can considerably alter the geochemical proxy signatures in calcareous skeletal structures such as bivalve shells or fish otoliths. Based on experimental and archaeological data, we show that carbonate clumped-isotope thermometry can be used to detect and reconstruct prehistoric processing methods in skeletal aragonite from archaeological shell midden assemblages. Given the temperature-dependent re-equilibration of clumped isotopes in aragonitic carbonates, this allows specific processing, cooking or trash dispersal strategies such as boiling, roasting, or burning to be differentiated. Besides permitting the detailed reconstruction of cultural or technological aspects of shell midden formation, this also allows erroneous palaeoclimate reconstructions to be avoided as all aragonitic shells subjected to pre-historic cooking methods show a clear alteration of their initial oxygen isotopic composition.

16.
Sci Rep ; 7(1): 648, 2017 04 05.
Artigo em Inglês | MEDLINE | ID: mdl-28381824

RESUMO

The effects of six biotic and abiotic elicitors, i.e. MeJA (methyl jasmonate), SA (salicylic acid), ZnCl2, glutathione and ß-glucan BG (fungal elicitor), and wounding, on the secondary metabolite accumulation in the soft coral Sarcophyton ehrenbergi were assessed. Upon elicitation, metabolites were extracted and analysed by ultra-performance liquid chromatography-mass spectrometry (UPLC-MS). Except for MeJA, no differences in photosynthetic efficiency were observed after treatments, suggesting the absence of a remarkable stress on primary production. Chemometric analyses of UPLC-MS data showed clear segregation of SA and ZnCl2 elicited samples at 24 and 48 h post elicitation. Levels of acetylated diterpene and sterol viz., sarcophytonolide I and cholesteryl acetate, was increased in ZnCl2 and SA groups, respectively, suggesting an activation of specific acetyl transferases. Post elicitation, sarcophytonolide I level increased 132 and 17-folds at 48 h in 0.1 mM SA and 1 mM ZnCl2 groups, respectively. Interestingly, decrease in sarcophine, a major diterpene was observed only in response to ZnCl2, whereas no change was observed in sesquiterpene content following treatments. To the best of our knowledge, this study provides the first documentation for elicitation effects on a soft corals secondary metabolome and suggests that SA could be applied to increase diterpenoid levels in corals.


Assuntos
Antozoários/metabolismo , Metaboloma , Metabolômica , Terpenos/metabolismo , Acetatos/metabolismo , Animais , Antozoários/efeitos dos fármacos , Cromatografia Líquida de Alta Pressão , Análise por Conglomerados , Ciclopentanos/metabolismo , Espectrometria de Massas , Metabolômica/métodos , Oxilipinas/metabolismo , Fotossíntese , Extratos Vegetais/metabolismo , Ácido Salicílico/metabolismo , Simbiose , Terpenos/química
17.
BMC Bioinformatics ; 18(1): 148, 2017 Mar 03.
Artigo em Inglês | MEDLINE | ID: mdl-28253837

RESUMO

BACKGROUND: The classification of samples on a molecular level has manifold applications, from patient classification regarding cancer treatment to phylogenetics for identifying evolutionary relationships between species. Modern methods employ the alignment of DNA or amino acid sequences, mostly not genome-wide but only on selected parts of the genome. Recently proteomics-based approaches have become popular. An established method for the identification of peptides and proteins is liquid chromatography-tandem mass spectrometry (LC-MS/MS). First, protein sequences from MS/MS spectra are identified by means of database searches, given samples with known genome-wide sequence information, then sequence based methods are applied. Alternatively, de novo peptide sequencing algorithms annotate MS/MS spectra and deduce peptide/protein information without a database. A newer approach independent of additional information is to directly compare unidentified tandem mass spectra. The challenge then is to compute the distance between pairwise MS/MS runs consisting of thousands of spectra. METHODS: We present DISMS2, a new algorithm to calculate proteome-wide distances directly from MS/MS data, extending the algorithm compareMS2, an approach that also uses a spectral comparison pipeline. RESULTS: Our new more flexible algorithm, DISMS2, allows for the choice of the spectrum distance measure and includes different spectra preprocessing and filtering steps that can be tailored to specific situations by parameter optimization. CONCLUSIONS: DISMS2 performs well for samples from species with and without database annotation and thus has clear advantages over methods that are purely based on database search.


Assuntos
Algoritmos , Cromatografia Líquida/métodos , Peptídeos/análise , Proteoma/química , Proteômica/métodos , Espectrometria de Massas em Tandem/métodos , Sequência de Aminoácidos , Bases de Dados de Proteínas , Humanos
18.
J Proteome Res ; 15(4): 1274-87, 2016 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-26892921

RESUMO

Marine life has developed unique metabolic and physiologic capabilities and advanced symbiotic relationships to survive in the varied and complex marine ecosystems. Herein, metabolite composition of the soft coral genus Sarcophyton was profiled with respect to its species and different habitats along the coastal Egyptian Red Sea via (1)H NMR and ultra performance liquid chromatography-mass spectrometry (UPLC-MS) large-scale metabolomics analyses. The current study extends the application of comparative secondary metabolite profiling from plants to corals revealing for metabolite compositional differences among its species via a comparative MS and NMR approach. This was applied for the first time to investigate the metabolism of 16 Sarcophyton species in the context of their genetic diversity or growth habitat. Under optimized conditions, we were able to simultaneously identify 120 metabolites including 65 diterpenes, 8 sesquiterpenes, 18 sterols, and 15 oxylipids. Principal component analysis (PCA) and orthogonal projection to latent structures-discriminant analysis (OPLS) were used to define both similarities and differences among samples. For a compound based classification of coral species, UPLC-MS was found to be more effective than NMR. The main differentiations emanate from cembranoids and oxylipids. The specific metabolites that contribute to discrimination between soft corals of S. ehrenbergi from the three different growing habitats also belonged to cembrane type diterpenes, with aquarium S. ehrenbergi corals being less enriched in cembranoids compared to sea corals. PCA using either NMR or UPLC-MS data sets was found equally effective in predicting the species origin of unknown Sarcophyton. Cyclopropane containing sterols observed in abundance in corals may act as cellular membrane protectant against the action of coral toxins, that is, cembranoids.


Assuntos
Antozoários/química , Diterpenos/isolamento & purificação , Metabolômica , Sesquiterpenos/isolamento & purificação , Esteróis/isolamento & purificação , Animais , Antozoários/metabolismo , Biodiversidade , Cromatografia Líquida de Alta Pressão/métodos , Análise Discriminante , Diterpenos/metabolismo , Egito , Oceano Índico , Espectroscopia de Ressonância Magnética , Espectrometria de Massas , Análise de Componente Principal , Metabolismo Secundário , Sesquiterpenos/metabolismo , Esteróis/metabolismo
19.
Theory Biosci ; 128(2): 75-83, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19101746

RESUMO

Longevity of a taxonomic group is an important issue in understanding the dynamics of evolution. In this respect a key observation is that genera, families or orders can each be assigned a characteristic average lifetime (Van Valen in Evol Theory 1:1-30, 1973). Using the fossil marine animal genera database (Sepkoski in Bull Am Paleontol 363, pp 563, 2002) we here examine the relationship between longevity of a higher taxonomic group (orders) and the longevity of its lower taxonomic groups (genera). We find insignificant correlation between the size of an order and its longevity, whereas we observe large correlation between the lifetime of an order and the lifetime of its constituent genera. These observations suggest that longevity of taxonomic groups is heritable intrinsically or on the grounds of environmental preferences.


Assuntos
Especiação Genética , Longevidade/genética , Animais , Interpretação Estatística de Dados , Extinção Biológica
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