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1.
Science ; 384(6696): eadm7168, 2024 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-38723062

RESUMO

Despite a half-century of advancements, global magnetic resonance imaging (MRI) accessibility remains limited and uneven, hindering its full potential in health care. Initially, MRI development focused on low fields around 0.05 Tesla, but progress halted after the introduction of the 1.5 Tesla whole-body superconducting scanner in 1983. Using a permanent 0.05 Tesla magnet and deep learning for electromagnetic interference elimination, we developed a whole-body scanner that operates using a standard wall power outlet and without radiofrequency and magnetic shielding. We demonstrated its wide-ranging applicability for imaging various anatomical structures. Furthermore, we developed three-dimensional deep learning reconstruction to boost image quality by harnessing extensive high-field MRI data. These advances pave the way for affordable deep learning-powered ultra-low-field MRI scanners, addressing unmet clinical needs in diverse health care settings worldwide.


Assuntos
Aprendizado Profundo , Imageamento por Ressonância Magnética , Imagem Corporal Total , Imageamento por Ressonância Magnética/métodos , Imagem Corporal Total/métodos , Humanos , Imageamento Tridimensional/métodos
2.
Magn Reson Med ; 92(1): 112-127, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38376455

RESUMO

PURPOSE: To develop a new electromagnetic interference (EMI) elimination strategy for RF shielding-free MRI via active EMI sensing and deep learning direct MR signal prediction (Deep-DSP). METHODS: Deep-DSP is proposed to directly predict EMI-free MR signals. During scanning, MRI receive coil and EMI sensing coils simultaneously sample data within two windows (i.e., for MR data and EMI characterization data acquisition, respectively). Afterward, a residual U-Net model is trained using synthetic MRI receive coil data and EMI sensing coil data acquired during EMI signal characterization window, to predict EMI-free MR signals from signals acquired by MRI receive and EMI sensing coils. The trained model is then used to directly predict EMI-free MR signals from data acquired by MRI receive and sensing coils during the MR signal-acquisition window. This strategy was evaluated on an ultralow-field 0.055T brain MRI scanner without any RF shielding and a 1.5T whole-body scanner with incomplete RF shielding. RESULTS: Deep-DSP accurately predicted EMI-free MR signals in presence of strong EMI. It outperformed recently developed EDITER and convolutional neural network methods, yielding better EMI elimination and enabling use of few EMI sensing coils. Furthermore, it could work well without dedicated EMI characterization data. CONCLUSION: Deep-DSP presents an effective EMI elimination strategy that outperforms existing methods, advancing toward truly portable and patient-friendly MRI. It exploits electromagnetic coupling between MRI receive and EMI sensing coils as well as typical MR signal characteristics. Despite its deep learning nature, Deep-DSP framework is computationally simple and efficient.


Assuntos
Encéfalo , Aprendizado Profundo , Imageamento por Ressonância Magnética , Imageamento por Ressonância Magnética/instrumentação , Imageamento por Ressonância Magnética/métodos , Humanos , Encéfalo/diagnóstico por imagem , Ondas de Rádio , Imagens de Fantasmas , Campos Eletromagnéticos , Processamento de Imagem Assistida por Computador/métodos , Algoritmos , Processamento de Sinais Assistido por Computador
3.
Sci Adv ; 9(38): eadi9327, 2023 09 22.
Artigo em Inglês | MEDLINE | ID: mdl-37738341

RESUMO

In recent years, there has been an intensive development of portable ultralow-field magnetic resonance imaging (MRI) for low-cost, shielding-free, and point-of-care applications. However, its quality is poor and scan time is long. We propose a fast acquisition and deep learning reconstruction framework to accelerate brain MRI at 0.055 tesla. The acquisition consists of a single average three-dimensional (3D) encoding with 2D partial Fourier sampling, reducing the scan time of T1- and T2-weighted imaging protocols to 2.5 and 3.2 minutes, respectively. The 3D deep learning leverages the homogeneous brain anatomy available in high-field human brain data to enhance image quality, reduce artifacts and noise, and improve spatial resolution to synthetic 1.5-mm isotropic resolution. Our method successfully overcomes low-signal barrier, reconstructing fine anatomical structures that are reproducible within subjects and consistent across two protocols. It enables fast and quality whole-brain MRI at 0.055 tesla, with potential for widespread biomedical applications.


Assuntos
Aprendizado Profundo , Humanos , Encéfalo/diagnóstico por imagem , Imageamento por Ressonância Magnética , Sistemas Automatizados de Assistência Junto ao Leito
4.
Nat Rev Bioeng ; 1(9): 617-630, 2023 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-37705717

RESUMO

The advent of portable, low-field MRI (LF-MRI) heralds new opportunities in neuroimaging. Low power requirements and transportability have enabled scanning outside the controlled environment of a conventional MRI suite, enhancing access to neuroimaging for indications that are not well suited to existing technologies. Maximizing the information extracted from the reduced signal-to-noise ratio of LF-MRI is crucial to developing clinically useful diagnostic images. Progress in electromagnetic noise cancellation and machine learning reconstruction algorithms from sparse k-space data as well as new approaches to image enhancement have now enabled these advancements. Coupling technological innovation with bedside imaging creates new prospects in visualizing the healthy brain and detecting acute and chronic pathological changes. Ongoing development of hardware, improvements in pulse sequences and image reconstruction, and validation of clinical utility will continue to accelerate this field. As further innovation occurs, portable LF-MRI will facilitate the democratization of MRI and create new applications not previously feasible with conventional systems.

5.
Sci Data ; 10(1): 264, 2023 05 10.
Artigo em Inglês | MEDLINE | ID: mdl-37164976

RESUMO

Recently, low-field magnetic resonance imaging (MRI) has gained renewed interest to promote MRI accessibility and affordability worldwide. The presented M4Raw dataset aims to facilitate methodology development and reproducible research in this field. The dataset comprises multi-channel brain k-space data collected from 183 healthy volunteers using a 0.3 Tesla whole-body MRI system, and includes T1-weighted, T2-weighted, and fluid attenuated inversion recovery (FLAIR) images with in-plane resolution of ~1.2 mm and through-plane resolution of 5 mm. Importantly, each contrast contains multiple repetitions, which can be used individually or to form multi-repetition averaged images. After excluding motion-corrupted data, the partitioned training and validation subsets contain 1024 and 240 volumes, respectively. To demonstrate the potential utility of this dataset, we trained deep learning models for image denoising and parallel imaging tasks and compared their performance with traditional reconstruction methods. This M4Raw dataset will be valuable for the development of advanced data-driven methods specifically for low-field MRI. It can also serve as a benchmark dataset for general MRI reconstruction algorithms.


Assuntos
Encéfalo , Imageamento por Ressonância Magnética , Humanos , Algoritmos , Encéfalo/diagnóstico por imagem , Encéfalo/patologia , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos , Imagem Corporal Total
6.
NMR Biomed ; : e4956, 2023 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-37088894

RESUMO

At present, MRI scans are typically performed inside fully enclosed radiofrequency (RF) shielding rooms, posing stringent installation requirements and causing patient discomfort. We aim to eliminate electromagnetic interference (EMI) for MRI with no or incomplete RF shielding. In this study, a method of active sensing and deep learning EMI prediction is presented to model, predict, and remove EMI signal components from acquired MRI signals. Specifically, during each MRI scan, separate EMI-sensing coils placed in various locations are utilized to simultaneously sample external and internal EMI signals within two windows (for both conventional MRI signal acquisition and EMI characterization acquisition). A convolution neural network model is trained using the EMI characterization data to relate EMI signals detected by EMI-sensing coils to EMI signals in the MRI receive coil. This model is then used to retrospectively predict and remove EMI signal components detected by the MRI receive coil during the MRI signal acquisition window. This strategy was implemented on a low-cost ultralow-field 0.055 T permanent magnet MRI scanner without RF shielding. It produced final image signal-to-noise ratios that were comparable with those obtained using a fully enclosed RF shielding cage, and outperformed existing analytical EMI elimination methods (i.e., spectral domain transfer function and external dynamic interference estimation and removal [EDITER] methods). A preliminary experiment also demonstrated its applicability on a 1.5 T superconducting magnet MRI scanner with incomplete RF shielding. Altogether, the results demonstrated that the proposed method was highly effective in predicting and removing various EMI signals from both external environments and internal scanner electronics at both 0.055 T (2.3 MHz) and 1.5 T (63.9 MHz). The proposed strategy enables shielding-free MRI. The concept is relatively simple and is potentially applicable to other RF signal detection scenarios in the presence of external and/or internal EMI.

7.
Magn Reson Med ; 90(2): 400-416, 2023 08.
Artigo em Inglês | MEDLINE | ID: mdl-37010491

RESUMO

PURPOSE: Recent development of ultra-low-field (ULF) MRI presents opportunities for low-power, shielding-free, and portable clinical applications at a fraction of the cost. However, its performance remains limited by poor image quality. Here, a computational approach is formulated to advance ULF MR brain imaging through deep learning of large-scale publicly available 3T brain data. METHODS: A dual-acquisition 3D superresolution model is developed for ULF brain MRI at 0.055 T. It consists of deep cross-scale feature extraction, attentional fusion of two acquisitions, and reconstruction. Models for T1 -weighted and T2 -weighted imaging were trained with 3D ULF image data sets synthesized from the high-resolution 3T brain data from the Human Connectome Project. They were applied to 0.055T brain MRI with two repetitions and isotropic 3-mm acquisition resolution in healthy volunteers, young and old, as well as patients. RESULTS: The proposed approach significantly enhanced image spatial resolution and suppressed noise/artifacts. It yielded high 3D image quality at 0.055 T for the two most common neuroimaging protocols with isotropic 1.5-mm synthetic resolution and total scan time under 20 min. Fine anatomical details were restored with intrasubject reproducibility, intercontrast consistency, and confirmed by 3T MRI. CONCLUSION: The proposed dual-acquisition 3D superresolution approach advances ULF MRI for quality brain imaging through deep learning of high-field brain data. Such strategy can empower ULF MRI for low-cost brain imaging, especially in point-of-care scenarios or/and in low-income and mid-income countries.


Assuntos
Aprendizado Profundo , Humanos , Reprodutibilidade dos Testes , Imageamento por Ressonância Magnética/métodos , Imageamento Tridimensional/métodos , Neuroimagem/métodos , Encéfalo/diagnóstico por imagem
8.
Magn Reson Med ; 90(2): 502-519, 2023 08.
Artigo em Inglês | MEDLINE | ID: mdl-37010506

RESUMO

PURPOSE: To develop a robust parallel imaging reconstruction method using spatial nulling maps (SNMs). METHODS: Parallel reconstruction using null operations (PRUNO) is a k-space reconstruction method where a k-space nulling system is derived using null-subspace bases of the calibration matrix. ESPIRiT reconstruction extends the PRUNO subspace concept by exploiting the linear relationship between signal-subspace bases and spatial coil sensitivity characteristics, yielding a hybrid-domain approach. Yet it requires empirical eigenvalue thresholding to mask the coil sensitivity information and is sensitive to signal- and null-subspace division. In this study, we combine the concepts of null-subspace PRUNO and hybrid-domain ESPIRiT to provide a more robust reconstruction method that extracts null-subspace bases of calibration matrix to calculate image-domain SNMs. Multi-channel images are reconstructed by solving an image-domain nulling system formed by SNMs that contain both coil sensitivity and finite image support information, therefore, circumventing the masking-related procedure. The proposed method was evaluated with multi-channel 2D brain and knee data and compared to ESPIRiT. RESULTS: The proposed hybrid-domain method produced quality reconstruction highly comparable to ESPIRiT with optimal manual masking. It involved no masking-related manual procedure and was tolerant of the actual division of null- and signal-subspace. Spatial regularization could be also readily incorporated to reduce noise amplification as in ESPIRiT. CONCLUSION: We provide an efficient hybrid-domain reconstruction method using multi-channel SNMs that are calculated from coil calibration data. It eliminates the need for coil sensitivity masking and is relatively insensitive to subspace separation, therefore, presenting a robust parallel imaging reconstruction procedure in practice.


Assuntos
Algoritmos , Imageamento por Ressonância Magnética , Imageamento por Ressonância Magnética/métodos , Encéfalo/diagnóstico por imagem , Calibragem , Processamento de Imagem Assistida por Computador/métodos , Imagens de Fantasmas
9.
Nat Commun ; 14(1): 2195, 2023 04 17.
Artigo em Inglês | MEDLINE | ID: mdl-37069169

RESUMO

As a key oscillatory activity in the brain, thalamic spindle activities are long believed to support memory consolidation. However, their propagation characteristics and causal actions at systems level remain unclear. Using functional MRI (fMRI) and electrophysiology recordings in male rats, we found that optogenetically-evoked somatosensory thalamic spindle-like activities targeted numerous sensorimotor (cortex, thalamus, brainstem and basal ganglia) and non-sensorimotor limbic regions (cortex, amygdala, and hippocampus) in a stimulation frequency- and length-dependent manner. Thalamic stimulation at slow spindle frequency (8 Hz) and long spindle length (3 s) evoked the most robust brain-wide cross-modal activities. Behaviorally, evoking these global cross-modal activities during memory consolidation improved visual-somatosensory associative memory performance. More importantly, parallel visual fMRI experiments uncovered response potentiation in brain-wide sensorimotor and limbic integrative regions, especially superior colliculus, periaqueductal gray, and insular, retrosplenial and frontal cortices. Our study directly reveals that thalamic spindle activities propagate in a spatiotemporally specific manner and that they consolidate associative memory by strengthening multi-target memory representation.


Assuntos
Consolidação da Memória , Masculino , Ratos , Animais , Consolidação da Memória/fisiologia , Encéfalo/diagnóstico por imagem , Tálamo/diagnóstico por imagem , Tálamo/fisiologia , Lobo Frontal/fisiologia , Imageamento por Ressonância Magnética
10.
IEEE Trans Med Imaging ; 42(6): 1644-1655, 2023 06.
Artigo em Inglês | MEDLINE | ID: mdl-37018640

RESUMO

Low-rank technique has emerged as a powerful calibrationless alternative for parallel magnetic resonance (MR) imaging. Calibrationless low-rank reconstruction, such as low-rank modeling of local k-space neighborhoods (LORAKS), implicitly exploits both coil sensitivity modulations and the finite spatial support constraint of MR images through an iterative low-rank matrix recovery process. Although powerful, this slow iteration process is computationally demanding and reconstruction requires empirical rank optimization, hampering its robust applications for high-resolution volume imaging. This paper proposes a fast and calibrationless low-rank reconstruction of undersampled multi-slice MR brain data, based on the finite spatial support constraint reformulation with a direct deep learning estimation of spatial support maps. The iteration process of low-rank reconstruction is unrolled into a complex-valued network by training on fully-sampled multi-slice axial brain datasets acquired from the same MR coil system. To utilize coil-subject geometric parameters available for datasets, the model minimizes a hybrid loss on two sets of spatial support maps, corresponding to brain data at the original slice locations as actually acquired and nearby locations within the standard reference coordinate. This deep learning framework was integrated with LORAKS reconstruction and was evaluated with publically available gradient-echo T1-weighted brain datasets. It directly produced high-quality multi-channel spatial support maps from undersampled data, enabling rapid reconstruction without iteration. Moreover, it led to effective reductions of artifacts and noise amplification at high acceleration. In summary, our proposed deep learning framework offers a new strategy to advance the existing calibrationless low-rank reconstruction, rendering it computationally efficient, simple, and robust in practice.


Assuntos
Aprendizado Profundo , Processamento de Imagem Assistida por Computador , Processamento de Imagem Assistida por Computador/métodos , Algoritmos , Imageamento por Ressonância Magnética/métodos , Encéfalo/diagnóstico por imagem
11.
Magn Reson Med ; 90(1): 280-294, 2023 07.
Artigo em Inglês | MEDLINE | ID: mdl-37119514

RESUMO

PURPOSE: To develop a truly calibrationless reconstruction method that derives An Eigenvalue Approach to Autocalibrating Parallel MRI (ESPIRiT) maps from uniformly-undersampled multi-channel MR data by deep learning. METHODS: ESPIRiT, one commonly used parallel imaging reconstruction technique, forms the images from undersampled MR k-space data using ESPIRiT maps that effectively represents coil sensitivity information. Accurate ESPIRiT map estimation requires quality coil sensitivity calibration or autocalibration data. We present a U-Net based deep learning model to estimate the multi-channel ESPIRiT maps directly from uniformly-undersampled multi-channel multi-slice MR data. The model is trained using fully-sampled multi-slice axial brain datasets from the same MR receiving coil system. To utilize subject-coil geometric parameters available for each dataset, the training imposes a hybrid loss on ESPIRiT maps at the original locations as well as their corresponding locations within the standard reference multi-slice axial stack. The performance of the approach was evaluated using publicly available T1-weighed brain and cardiac data. RESULTS: The proposed model robustly predicted multi-channel ESPIRiT maps from uniformly-undersampled k-space data. They were highly comparable to the reference ESPIRiT maps directly computed from 24 consecutive central k-space lines. Further, they led to excellent ESPIRiT reconstruction performance even at high acceleration, exhibiting a similar level of errors and artifacts to that by using reference ESPIRiT maps. CONCLUSION: A new deep learning approach is developed to estimate ESPIRiT maps directly from uniformly-undersampled MR data. It presents a general strategy for calibrationless parallel imaging reconstruction through learning from the coil and protocol-specific data.


Assuntos
Aprendizado Profundo , Processamento de Imagem Assistida por Computador/métodos , Algoritmos , Imageamento por Ressonância Magnética/métodos , Encéfalo/diagnóstico por imagem
12.
Cereb Cortex ; 33(10): 5863-5874, 2023 05 09.
Artigo em Inglês | MEDLINE | ID: mdl-36795038

RESUMO

The cortical distribution and functional role of cholecystokinin (CCK) are largely unknown. Here, a CCK receptor antagonist challenge paradigm was developed to assess functional connectivity and neuronal responses. Structural-functional magnetic resonance imaging and calcium imaging were undertaken in environmental enrichment (EE) and standard environment (SE) groups (naïve adult male mice, n = 59, C57BL/B6J, P = 60). Functional connectivity network-based statistics and pseudo-demarcation Voronoi tessellations to cluster calcium signals were used to derive region of interest metrics based on calcium transients, firing rate, and location. The CCK challenge elicited robust changes to structural-functional networks, decreased neuronal calcium transients, and max firing rate (5 s) of dorsal hippocampus in SE mice. However, the functional changes were not observed in EE mice, while the decreased neuronal calcium transients and max firing rate (5 s) were similar to SE mice. Decreased gray matter alterations were observed in multiple brain regions in the SE group due to CCK challenge, while no effect was observed in the EE group. The networks most affected by CCK challenge in SE included within isocortex, isocortex to olfactory, isocortex to striatum, olfactory to midbrain, and olfactory to thalamus. The EE group did not experience network changes in functional connectivity due to CCK challenge. Interestingly, calcium imaging revealed a significant decrease in transients and max firing rate (5 s) in the dorsal CA1 hippocampus subregion after CCK challenge in EE. Overall, CCK receptor antagonists affected brain-wide structural-functional connectivity within the isocortex, in addition to eliciting decreased neuronal calcium transients and max firing rate (5 s) in CA1 of the hippocampus. Future studies should investigate the CCK functional networks and how these processes affect isocortex modulation. Significance Statement  Cholecystokinin is a neuropeptide predominately found in the gastrointestinal system. Albeit abundantly expressed in neurons, the role and distribution of cholecystokinin are largely unknown. Here, we demonstrate cholecystokinin affects brain-wide structural-functional networks within the isocortex. In the hippocampus, the cholecystokinin receptor antagonist challenge decreases neuronal calcium transients and max firing rate (5 s) in CA1. We further demonstrate that mice in environmental enrichment do not experience functional network changes to the CCK receptor antagonist challenge. Environmental enrichment may afford protection to the alterations observed in control mice due to CCK. Our results suggest that cholecystokinin is distributed throughout the brain, interacts in the isocortex, and demonstrates an unexpected functional network stability for enriched mice.


Assuntos
Colecistocinina , Conectoma , Camundongos , Masculino , Animais , Receptores da Colecistocinina , Cálcio , Camundongos Endogâmicos C57BL , Hipocampo
13.
Neuroimage ; 270: 119943, 2023 04 15.
Artigo em Inglês | MEDLINE | ID: mdl-36828157

RESUMO

Despite its prominence in learning and memory, hippocampal influence in early auditory processing centers remains unknown. Here, we examined how hippocampal activity modulates sound-evoked responses in the auditory midbrain and thalamus using optogenetics and functional MRI (fMRI) in rodents. Ventral hippocampus (vHP) excitatory neuron stimulation at 5 Hz evoked robust hippocampal activity that propagates to the primary auditory cortex. We then tested 5 Hz vHP stimulation paired with either natural vocalizations or artificial/noise acoustic stimuli. vHP stimulation enhanced auditory responses to vocalizations (with a negative or positive valence) in the inferior colliculus, medial geniculate body, and auditory cortex, but not to their temporally reversed counterparts (artificial sounds) or broadband noise. Meanwhile, pharmacological vHP inactivation diminished response selectivity to vocalizations. These results directly reveal the large-scale hippocampal participation in natural sound processing at early centers of the ascending auditory pathway. They expand our present understanding of hippocampus in global auditory networks.


Assuntos
Córtex Auditivo , Colículos Inferiores , Colículos Inferiores/fisiologia , Vias Auditivas/fisiologia , Córtex Auditivo/fisiologia , Estimulação Acústica/métodos , Percepção Auditiva/fisiologia , Corpos Geniculados/fisiologia , Hipocampo
14.
Sci Adv ; 8(46): eabo2098, 2022 Nov 18.
Artigo em Inglês | MEDLINE | ID: mdl-36383661

RESUMO

Major depressive disorder (MDD) is a devastating mental disorder that affects up to 17% of the population worldwide. Although brain-wide network-level abnormalities in MDD patients via resting-state functional magnetic resonance imaging (rsfMRI) exist, the mechanisms underlying these network changes are unknown, despite their immense potential for depression diagnosis and management. Here, we show that the astrocytic calcium-deficient mice, inositol 1,4,5-trisphosphate-type-2 receptor knockout mice (Itpr2-/- mice), display abnormal rsfMRI functional connectivity (rsFC) in depression-related networks, especially decreased rsFC in medial prefrontal cortex (mPFC)-related pathways. We further uncover rsFC decreases in MDD patients highly consistent with those of Itpr2-/- mice, especially in mPFC-related pathways. Optogenetic activation of mPFC astrocytes partially enhances rsFC in depression-related networks in both Itpr2-/- and wild-type mice. Optogenetic activation of the mPFC neurons or mPFC-striatum pathway rescues disrupted rsFC and depressive-like behaviors in Itpr2-/- mice. Our results identify the previously unknown role of astrocyte dysfunction in driving rsFC abnormalities in depression.

15.
Magn Reson Med ; 88(6): 2461-2474, 2022 12.
Artigo em Inglês | MEDLINE | ID: mdl-36178232

RESUMO

PURPOSE: To develop a joint denoising method that effectively exploits natural information redundancy in MR DWIs via low-rank patch matrix approximation. METHODS: A denoising method is introduced to jointly reduce noise in DWI dataset by exploiting nonlocal self-similarity as well as local anatomical/structural similarity within multiple 2D DWIs acquired with the same anatomical geometry but different diffusion directions. Specifically, for each small 3D reference patch sliding within 2D DWI, nonlocal but similar patches are searched by matching image contents within entire DWI dataset and then structured into a patch matrix. The resulting patch matrices are denoised by enforcing low-rankness via weighted nuclear norm minimization and finally are back-distributed to DWI space. The proposed procedure was evaluated with simulated and in vivo brain diffusion tensor imaging (DTI) datasets and then compared to existing Marchenko-Pastur principal component analysis denoising method. RESULTS: The proposed method achieved significant noise reduction while preserving structural details in all DWIs for both simulated and in vivo datasets. Quantitative evaluation of error maps demonstrated it consistently outperformed Marchenko-Pastur principal component analysis method. Further, the denoised DWIs led to substantially improved DTI parametric maps, exhibiting significantly less noise and revealing more microstructural details. CONCLUSION: The proposed method denoises DWI dataset by utilizing both nonlocal self-similarity and local structural similarity within DWI dataset. This weighted nuclear norm minimization-based low-rank patch matrix denoising approach is effective and highly applicable to various diffusion MRI applications, including DTI as a postprocessing procedure.


Assuntos
Algoritmos , Imagem de Tensor de Difusão , Encéfalo/diagnóstico por imagem , Imagem de Difusão por Ressonância Magnética/métodos , Razão Sinal-Ruído
16.
Neuroimage ; 252: 119016, 2022 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-35189359

RESUMO

Environmental enrichment induces widespread neuronal changes, but the initiation of the cascade is unknown. We ascertained the critical period of divergence between environmental enriched (EE) and standard environment (SE) mice using continuous infrared (IR) videography, functional magnetic resonance imaging (fMRI), and neuron level calcium imaging. Naïve adult male mice (n = 285, C57BL/6J, postnatal day 60) were divided into SE and EE groups. We assessed the linear time-series of motion activity using a novel structural break test which examined the dataset for change in circadian and day-by-day motion activity. fMRI was used to map brain-wide response using a functional connectome analysis pipeline. Awake calcium imaging was performed on the dorsal CA1 pyramidal layer. We found the preeminent behavioral feature in EE was a forward shift in the circadian rhythm, prolongation of activity in the dark photoperiod, and overall decreased motion activity. The crepuscular period of dusk was seen as the critical period of divergence between EE and SE mice. The functional processes at dusk in EE included increased functional connectivity in the visual cortex, motor cortex, retrosplenial granular cortex, and cingulate cortex using seed-based analysis. Network based statistics found a modulated functional connectome in EE concentrated in two hubs: the hippocampal formation and isocortical network. These hubs experienced a higher node degree and significant enhanced edge connectivity. Calcium imaging revealed increased spikes per second and maximum firing rate in the dorsal CA1 pyramidal layer, in addition to location (anterior-posterior and medial-lateral) effect size differences between EE and SE. The emergence of functional-neuronal changes due to enrichment consisted of enhanced hippocampal-isocortex functional connectivity and CA1 neuronal increased spiking linked to a circadian shift during the dusk period. Future studies should explore the molecular consequences of enrichment inducing shifts in the circadian period.


Assuntos
Cálcio , Meio Ambiente , Animais , Encéfalo/fisiologia , Hipocampo , Humanos , Masculino , Camundongos , Camundongos Endogâmicos C57BL
17.
NMR Biomed ; 35(7): e4695, 2022 07.
Artigo em Inglês | MEDLINE | ID: mdl-35032072

RESUMO

We propose a multi-slice acquisition with orthogonally alternating phase encoding (PE) direction and subsequent joint calibrationless reconstruction for accelerated multiple individual 2D slices or multi-slice 2D Cartesian MRI. Specifically, multi-slice multi-channel data are first acquired with random or uniform PE undersampling while orthogonally alternating PE direction between adjacent slices. They are then jointly reconstructed through a recently developed low-rank multi-slice Hankel tensor completion (MS-HTC) approach. The proposed acquisition and reconstruction strategy was evaluated with human brain MR data. It effectively suppressed aliasing artifacts even at high acceleration factor, outperforming the existing MS-HTC approach, where PE direction is the same between adjacent slices. More importantly, the new strategy worked robustly with uniform undersampling or random undersampling without any consecutive central k-space lines. In summary, our proposed multi-slice MRI strategy exploits both coil sensitivity and image content similarities across adjacent slices. Orthogonally alternating PE direction among slices substantially facilitates the low-rank completion process and improves image reconstruction quality. This new strategy is applicable to uniform and random PE undersampling. It can be easily implemented in practice for Cartesian parallel imaging of multiple individual 2D slices without any coil sensitivity calibration.


Assuntos
Processamento de Imagem Assistida por Computador , Imageamento por Ressonância Magnética , Algoritmos , Artefatos , Encéfalo/diagnóstico por imagem , Calibragem , Humanos , Processamento de Imagem Assistida por Computador/métodos , Imageamento por Ressonância Magnética/métodos
18.
Magn Reson Med ; 87(2): 999-1014, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-34611904

RESUMO

PURPOSE: To provide a complex-valued deep learning approach for partial Fourier (PF) reconstruction of complex MR images. METHODS: Conventional PF reconstruction methods, such as projection onto convex sets (POCS), uses low-resolution image phase information from the central symmetrically sampled k-space for image reconstruction. However, this smooth phase constraint undermines the phase estimation accuracy in presence of rapid local phase variations, causing image artifacts and limiting the extent of PF reconstruction. Using both magnitude and phase characteristics in big complex image datasets, we propose a complex-valued deep learning approach with an unrolled network architecture for PF reconstruction that iteratively reconstructs PF sampled data and enforces data consistency. We evaluate our approach for reconstructing both spin-echo and gradient-echo data. RESULTS: The proposed method outperformed the iterative POCS PF reconstruction method. It produced better artifact suppression and recovery of both image magnitude and phase details in presence of local phase changes. No noise amplification was observed even for highly PF reconstruction. Moreover, the network trained on axial brain data could reconstruct sagittal and coronal brain and knee data. This method could be extended to 2D PF reconstruction and joint multi-slice PF reconstruction. CONCLUSION: Our proposed method can effectively reconstruct MR data even at low PF fractions, yielding high-fidelity magnitude and phase images. It presents a valuable alternative to conventional PF reconstruction, especially for phase-sensitive 2D or 3D MRI applications.


Assuntos
Processamento de Imagem Assistida por Computador , Variação de Fase , Algoritmos , Humanos , Imageamento por Ressonância Magnética , Redes Neurais de Computação
19.
Nat Commun ; 12(1): 7238, 2021 12 14.
Artigo em Inglês | MEDLINE | ID: mdl-34907181

RESUMO

Magnetic resonance imaging is a key diagnostic tool in modern healthcare, yet it can be cost-prohibitive given the high installation, maintenance and operation costs of the machinery. There are approximately seven scanners per million inhabitants and over 90% are concentrated in high-income countries. We describe an ultra-low-field brain MRI scanner that operates using a standard AC power outlet and is low cost to build. Using a permanent 0.055 Tesla Samarium-cobalt magnet and deep learning for cancellation of electromagnetic interference, it requires neither magnetic nor radiofrequency shielding cages. The scanner is compact, mobile, and acoustically quiet during scanning. We implement four standard clinical neuroimaging protocols (T1- and T2-weighted, fluid-attenuated inversion recovery like, and diffusion-weighted imaging) on this system, and demonstrate preliminary feasibility in diagnosing brain tumor and stroke. Such technology has the potential to meet clinical needs at point of care or in low and middle income countries.


Assuntos
Imageamento por Ressonância Magnética/instrumentação , Neuroimagem/instrumentação , Adulto , Neoplasias Encefálicas/diagnóstico por imagem , Aprendizado Profundo , Imagem de Difusão por Ressonância Magnética , Desenho de Equipamento , Estudos de Viabilidade , Humanos , Campos Magnéticos , Imageamento por Ressonância Magnética/economia , Imãs , Neuroimagem/economia , Imagens de Fantasmas , Sistemas Automatizados de Assistência Junto ao Leito , Acidente Vascular Cerebral/diagnóstico por imagem
20.
Foods ; 10(9)2021 Aug 29.
Artigo em Inglês | MEDLINE | ID: mdl-34574144

RESUMO

The anterior insula and rolandic operculum are key regions for flavour perception in the human brain; however, it is unclear how taste and congruent retronasal smell are perceived as flavours. The multisensory integration required for sour flavour perception has rarely been studied; therefore, we investigated the brain responses to taste and smell in the sour flavour-processing network in 35 young healthy adults. We aimed to characterise the brain response to three stimulations applied in the oral cavity-sour taste, retronasal smell of mango, and combined flavour of both-using functional magnetic resonance imaging. Effective connectivity of the flavour-processing network and modulatory effect from taste and smell were analysed. Flavour stimulation activated middle insula and olfactory tubercle (primary taste and olfactory cortices, respectively); anterior insula and rolandic operculum, which are associated with multisensory integration; and ventrolateral prefrontal cortex, a secondary cortex for flavour perception. Dynamic causal modelling demonstrated that neural taste and smell signals were integrated at anterior insula and rolandic operculum. These findings elucidated how neural signals triggered by sour taste and smell presented in liquid form interact in the brain, which may underpin the neurobiology of food appreciation. Our study thus demonstrated the integration and synergy of taste and smell.

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