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1.
Cytogenet Genome Res ; 116(1-2): 12-7, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17268172

RESUMO

Mice with recessive cataract, CXSD, show the first clinical symptoms of cataract at five weeks, with complete penetrance. We previously localized the cataract-causing lens rupture 2 gene (lr2) to mouse chromosome 14. In the process of positional cloning of the lr2 gene, we determined the genomic organization of the critical region, defined by D14Mit262 and D14Mit86, and compared it to recently published map information. In addition, mutational analysis using reverse transcription polymerase chain reaction (RT-PCR) followed by direct sequencing as well as quantitative realtime PCR (RQ-PCR) was performed to investigate Adam28 and Adamdec1 as lr2 candidate genes in this study. There was no mutation cosegregating with the phenotype of CXSD mice, which excluded these genes as the lr2 gene. Identification of more transcripts from this region and their mutation analyses are required to isolate the lr2 gene.


Assuntos
Proteínas ADAM/genética , Catarata/genética , Mapeamento Cromossômico/métodos , Genes/genética , Genoma , Sitios de Sequências Rotuladas , Animais , Análise Mutacional de DNA , Primers do DNA/química , Regulação da Expressão Gênica , Genes/fisiologia , Camundongos , Modelos Genéticos , Fenótipo , RNA Mensageiro/metabolismo , Reação em Cadeia da Polimerase Via Transcriptase Reversa
3.
J Biol Chem ; 276(50): 47100-6, 2001 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-11600497

RESUMO

Many Fas-expressing cells do not undergo cell death upon Fas stimulation. In the normal human diploid cell line GM6112, the addition of soluble Fas ligand (sFasL) leads to morphological signs of cell death in less than 1% of cells. Treatment of serum-starved GM6112 fibroblasts with sFasL resulted in a rapid and transient phosphorylation of ERK1/2 without a significant increase in JNK and p38 activities. Unless co-treated with the protein synthesis inhibitor anisomycin, sFasL did not show gene-inducing activity in cells maintained in complete medium. However, when cells were serum-starved for 4 days, treatment with sFasL alone induced interleukin-6 gene expression and, less strongly, interleukin-8 gene expression. Sensitization of the gene-inducing activity by serum starvation correlated with NF-kappaB activation by sFasL. Furthermore, we found that the expression of FADD and caspase-8 was significantly reduced in serum-starved cells, whereas the level of cFLIP remained unchanged. Transfection of GM6112 cells with the antisense caspase-8 expression construct sensitized cells toward sFasL-induced NF-kappaB-dependent reporter activation. Our results support the notion that a change in the ratio of cFLIP and caspase-8 may be responsible for turning on the Fas-activated NF-kappaB pathway, which otherwise is supplanted by the death-inducing pathway.


Assuntos
Apoptose , Proteínas de Arabidopsis , Cristalinas/química , Meios de Cultura Livres de Soro/metabolismo , Fibroblastos/metabolismo , Regulação Enzimológica da Expressão Gênica , Peptídeos e Proteínas de Sinalização Intracelular , Glicoproteínas de Membrana/metabolismo , NF-kappa B/metabolismo , Transdução de Sinais , Animais , Anisomicina/farmacologia , Western Blotting , Proteína Reguladora de Apoptosis Semelhante a CASP8 e FADD , Células CHO , Proteínas de Transporte/metabolismo , Caspase 8 , Caspase 9 , Caspases/biossíntese , Caspases/metabolismo , Linhagem Celular , Núcleo Celular/metabolismo , Cricetinae , Meios de Cultura Livres de Soro/farmacologia , Diploide , Relação Dose-Resposta a Droga , Regulação para Baixo , Ativação Enzimática , Precursores Enzimáticos/metabolismo , Proteína Ligante Fas , Ácidos Graxos Dessaturases/metabolismo , Genes Reporter , Glutationa Transferase/metabolismo , Humanos , Interleucina-6/biossíntese , Interleucina-8/biossíntese , Luciferases/metabolismo , Proteína Quinase 1 Ativada por Mitógeno/metabolismo , Proteína Quinase 3 Ativada por Mitógeno , Proteínas Quinases Ativadas por Mitógeno/metabolismo , Oligonucleotídeos Antissenso/farmacologia , Fosforilação , Ligação Proteica , Proteína Quinase C/metabolismo , Inibidores da Síntese de Proteínas/farmacologia , Fatores de Tempo , Transfecção
4.
J Synchrotron Radiat ; 8(Pt 2): 599-601, 2001 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-11512864

RESUMO

New Co-doped-SiO2-sol pillared montmorillonite has been synthesized by interlayer hydrolysis and condensation of tetraethylorthosilicate (TEOS) in the presence of Co2+ ion using an organic template. The Co K-edge XANES and EXAFS analyses for the CoO-SiO2-PILC (before and after calcination) and for the references such as CoO and Co(OH)2 were performed in order to obtain electronic and local structural information of cobalt species, which may act as a catalytic active site for the selective reduction of NO(x), hydrodesulfurization, and Fischer-Tropsch reaction. According to the XANES spectra, the divalent cobalt ion is stabilized in an octahedral symmetry. The EXAFS result shows a significant change in local symmetry around cobalt ion upon calcination. The EXAFS fitting result before calcination shows that the cobalt species is in the form of hydroxide, with a small number of (Co-Co) pairs compared to the bulk Co(OH)2. After calcining at 550 degrees C, the first nearest neighbours were fitted to six oxygen atoms with two different distances, and the second and the third neighbours were fitted to two Si and one Co atoms. It is, therefore, reasonable to suggest a structure model, where the cobalt species on the SiO2 sol exists as a nano cluster of Co(OH)2 before calcination but transforms to a nanosized cobalt oxide covalently bound to the surface of SiO2 pillar after calcination.

5.
J Synchrotron Radiat ; 8(Pt 2): 782-4, 2001 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-11512930

RESUMO

The structural characterisation of SiO2/ZrO2 nano-sol particles, prepared by mixing SiO2 sol and aqueous solution of ZrOCl2 8H2O, has been carried out by in-situ XAS measurement at the Zr K-edge during condensation reaction. The detailed XANES features at the Zr K-edge of the mixed sol of SiO2/ZrO2 are compared with those of other references such as ZrO2, ZrOCl2 8H2O. BaZrO3, and ZrSiO4, and it becomes obvious that the Zr4+ ions are stabilised in an octahedral symmetry. The EXAFS result also indicates that each Zr atom is coordinated with six oxygen ones as the first nearest neighbour, where two oxygen atoms are from the linkage of (Si-O-Zr) at short distance, and four ones are from water molecules at long distance. As the condensation reaction proceeds, it is found that the number of oxygen atoms due to the formation of (Si-O-Zr) bond at short distance and the second neighbour of silicon atoms increase simultaneously. From the above EXAFS and XANES results, the structural and gelating models could be proposed, which is based on the octahedrally coordinated but distorted zirconium species attaching on the SiO2 sol surface.

6.
Br J Dermatol ; 145(1): 95-9, 2001 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-11453914

RESUMO

BACKGROUND: There are racial differences in the prevalence and types of androgenetic alopecia (AGA). There have been several reports on the prevalence and types of AGA in the general population of caucasians, but few studies on Koreans with samples of sufficient numbers have been reported. OBJECTIVES: To obtain a more precise estimate of the prevalence and types of AGA in Korean men and women and to compare the results with those in caucasians. METHODS: The prevalence and types of AGA were analysed in 10,132 Koreans (5531 men and 4601 women) who had visited the Health Examination Centre at Kyung Hee University Hospital for regular health examinations between December 1997 and July 1999. To classify the degree of hair loss for each subject, the Norwood classification was used in men and the Ludwig classification in women. For AGA in men, 'female pattern' was added to the Norwood classification. RESULTS: In Korean men, the prevalence of AGA (Norwood III or above) at all ages was 14.1%. It increased steadily with advancing age, but was lower than that of caucasians: 2.3% in the third decade, 4.0% in the fourth decade, 10.8% in the fifth decade, 24.5% in the sixth decade, 34.3% in the seventh decade and 46.9% over 70 years. Type III vertex involvement was the most common type in the third decade to the seventh decade; over 70 years, type VI was most common. A 'female pattern' was observed in 11.1% of cases. In Korean women, the prevalence of AGA (Ludwig I or above) at all ages was 5.6%. It also increased steadily with advancing age: 0.2% in the third decade, 2.3% in the fourth decade, 3.8% in the fifth decade, 7.4% in the sixth decade, 11.7% in the seventh decade and 24.7% over 70 years. Grade I was the most common type up to the sixth decade; over 60 years, grade I and II were similar in prevalence. Grade III (total baldness) was not observed. A family history of baldness was present in 48.5% of men and 45.2% of women with AGA. CONCLUSIONS: The prevalence of AGA in Korean men and women was lower than that in caucasians, as recorded in the literature. Korean men tend to have more frontal hairline preservation and show a more 'female pattern' of hair thinning than caucasians. Therefore, 'female pattern' should be added to the classification of AGA.


Assuntos
Alopecia/etnologia , Adulto , Distribuição por Idade , Idoso , Alopecia/genética , Alopecia/patologia , Feminino , Humanos , Coreia (Geográfico)/epidemiologia , Masculino , Pessoa de Meia-Idade , Prevalência , Índice de Gravidade de Doença , Fatores Sexuais
7.
J Pept Res ; 58(5): 389-98, 2001 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-11892848

RESUMO

Histones, nuclear proteins that interact with DNA to form nucleosomes, are essential for both the regulation of transcription and the packaging of DNA within chromosomes. The N-terminal domain of histone H4 contains four acetylation sites at lysine residues and may play a separate role in chromatin structure from the remainder of the H4 chain. We performed circular dichroism and NMR characterization of both native (H4NTP) and acetylated (Ace-H4NTP) peptides containing N-terminal acetylation domain of histone H4 for various pH environments. Data from CD and NMR suggested that H4NTP exhibited a pH-dependent conformational change, whereas the Ace-H4NTP is insensitive to pH change. However, both peptides showed a defined structural form at acidic pH environments. The solution structure for Ace-H4NTP shows two structurally independent regions comprising residues of Leu10-Gly13 and Arg19-Leu22, demonstrating relatively well-defined turn-type structures. Our results suggest that N-terminal acetylated region of H4 prefers an extended backbone conformation at neutral pH, however, upon acetylation, the regions containing lysine residues induce structural transition, having defined structural form for its optimum function.


Assuntos
Histonas/química , Proteínas de Saccharomyces cerevisiae , Acetiltransferases/metabolismo , Arginina/química , Cromatina/metabolismo , Cromatografia Líquida de Alta Pressão , Dicroísmo Circular , Glicina/química , Histona Acetiltransferases , Histona Desacetilases/metabolismo , Histonas/metabolismo , Concentração de Íons de Hidrogênio , Leucina/química , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Biossíntese Peptídica , Peptídeos/química , Ligação Proteica , Conformação Proteica , Estrutura Terciária de Proteína
8.
J Biol Chem ; 273(40): 26130-7, 1998 Oct 02.
Artigo em Inglês | MEDLINE | ID: mdl-9748294

RESUMO

The human DNA topoisomerase III (hTOP3) gene encodes a topoisomerase homologous to the Escherichia coli DNA topoisomerase I subfamily. To understand the mechanisms responsible for regulating hTOP3 expression, we have cloned the 5'-flanking region of the gene coding for the hTOP3 and analyzed its promoter activity. The presence of a single transcription initiation site was suggested by primer extension analysis. The hTOP3 gene promoter is moderately high in GC content and lacks a canonical TATA box, suggesting that hTOP3 promoter has overall similarity to promoters of a number of housekeeping genes. Examination of the promoter sequence indicated the presence of four Sp-1 consensus binding sequences and a putative initiator element surrounding the transcription initiation site. Transient expression of a luciferase reporter gene under the control of serially deleted 5'-flanking sequences revealed that the 52-base pair region from -326 to -275 upstream of the transcription initiation site includes a positive cis-acting element(s) for the efficient expression of hTOP3 gene. On the basis of gel mobility shift and supershift assays, we demonstrated that both YY1 and USF1 transcription factors can bind to the 52-base pair region. When HeLa cells were transiently transfected with a mutant construct which had disabled both YY1- and USF1-binding sites, the luciferase activity was greatly reduced, suggesting that these binding elements play a functional role in the basal activation of the hTOP3 promoter. Transfection studies with mutations that selectively impaired YY1 or USF1 binding suggested that both YY1 and USF1 function as activators in the hTOP3 promoter.


Assuntos
DNA Topoisomerases Tipo I/genética , Regiões Promotoras Genéticas/genética , Sequência de Bases , Sítios de Ligação/genética , Clonagem Molecular , Análise Mutacional de DNA , Proteínas de Ligação a DNA/metabolismo , Fatores de Ligação de DNA Eritroide Específicos , Regulação da Expressão Gênica/genética , Genes Reporter/genética , Células HeLa , Humanos , Dados de Sequência Molecular , Mutação/genética , Proteínas Nucleares/análise , Podofilina/análogos & derivados , Podofilina/genética , Podofilotoxina/análogos & derivados , RNA Mensageiro/análise , Análise de Sequência de DNA , Fatores de Transcrição/metabolismo , Transcrição Gênica/genética , Transfecção/genética , Fatores Estimuladores Upstream , Fator de Transcrição YY1
9.
J Biochem ; 124(1): 23-7, 1998 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-9644240

RESUMO

PTF/SNAPc is a multisubunit complex which specifically recognizes the PSEs of small nuclear RNA genes and activates transcription by RNA polymerase II or III. Here we describe the isolation and characterization of genomic clones encoding the human PTFgamma/SNAP43 gene. The gene spans approximately 29 kilobases, and is composed of 9 exons and 8 introns. A major transcription initiation site was identified at the position 58 base pairs upstream of the AUG translation initiator codon on primer extension analysis with HeLa mRNA. The 5' flanking region lacks a typical TATA box but contains many putative binding sites for various transcription factors, such as Sp1, Oct1, NF1, AP1, E2F, and USF. Immediately downstream of the transcription start site, we found a VNTR of a 17-bp sequence rich in (G+C). Four different alleles with two to five copies of the tandem repeat were identified in 10 individuals examined, indicating a high degree of variation at the PTFgamma/SNAP43 locus. In addition, the PTFgamma/SNAP43 gene was mapped to human chromosome 14q22 by fluorescence in situ hybridization.


Assuntos
Cromossomos Humanos Par 14 , RNA Mensageiro/genética , Fatores de Transcrição/genética , Sequência de Bases , Mapeamento Cromossômico , Sondas de DNA , DNA Complementar , Éxons , Células HeLa , Humanos , Íntrons , Repetições Minissatélites , Dados de Sequência Molecular
10.
EMBO J ; 17(6): 1768-78, 1998 Mar 16.
Artigo em Inglês | MEDLINE | ID: mdl-9501098

RESUMO

PTF (PSE-binding transcription factor) activates transcription of snRNA and related genes. We investigated its distribution in HeLa nuclei by immunofluorescence, and found it spread throughout the nucleoplasm in small foci. In some cells, PTF is also concentrated in one, or very few, discrete regions (diameter approximately 1.3 micron) that appear during G1 phase and disappear in S phase. Oct1, a transcription factor that interacts with PTF, is also enriched in these domains; RNA polymerase II, TBP and Sp1 are also present. Each domain typically contains 2 or 3 transcription 'factories' where Br-UTP is incorporated into nascent transcripts. Accordingly, we have christened this region the Oct1/PTF/transcription (OPT) domain. It colocalizes with some, but not all, PIKA domains. It is distinct from other nuclear domains, including coiled bodies, gemini bodies, PML bodies and the perinucleolar compartment. A small region on chromosome 6 (band 6p21) containing only approximately 30 Mbp DNA, and chromosomes 6 and 7, associate with the domain significantly more than other chromosomes. The domains may act like nucleoli to bring particular genes on specific chromosomes together to a region where the appropriate transcription and processing factors are concentrated, thereby facilitating the expression of those genes.


Assuntos
Núcleo Celular/metabolismo , Cromossomos Humanos/metabolismo , Proteínas de Ligação a DNA , Proteínas de Homeodomínio/metabolismo , Fatores de Transcrição/metabolismo , Amanitinas/farmacologia , Antígenos Nucleares , Ciclo Celular/fisiologia , Núcleo Celular/química , Diclororribofuranosilbenzimidazol/farmacologia , Células HeLa , Proteínas de Homeodomínio/análise , Fator C1 de Célula Hospedeira , Humanos , Proteínas Nucleares/análise , Inibidores da Síntese de Ácido Nucleico/farmacologia , Fator 1 de Transcrição de Octâmero , RNA Polimerase II/análise , Fatores de Transcrição/análise , Transcrição Gênica/fisiologia
11.
Mol Cells ; 7(6): 742-8, 1997 Dec 31.
Artigo em Inglês | MEDLINE | ID: mdl-9509415

RESUMO

Insulin has pleiotropic effects on the regulation of cellular growth, differentiation, and metabolism. The biochemical events ultimately leading to cell proliferation after insulin treatment have been demonstrated in detail by numerous research groups. However, depending on cell types, it has been shown that insulin has various effects on cell proliferation. Therefore, we attempted to more critically evaluate the effect of insulin on cell proliferation in 3T3 L1 fibroblasts. In this study, we investigated insulin's effect on cell proliferation by using [3H]thymidine incorporation, flow cytometry, and cell counting. In 3T3 L1 fibroblasts studied in 0.5% serum, insulin induced a two-fold increase in [3H]thymidine incorporation over at 48 h, and the maximal rate of DNA synthesis was observed during 8-12 h incubation. The flow cytometric analysis also showed that insulin increased the cell population in the S phase. After insulin treatment for 48 h, cell numbers increased approximately 45% in comparison with 0.5% serum control. Cell division was found to occur only once in 60 h after staining 3T3 L1 fibroblasts with carboxyfluorescein diacetate succinimidyl ester (CFSE). Taken together, this data indicates that insulin stimulated the transit from the G0/G1 to S phase, progressed the cell cycle through the G2/M phase, and increased the cell number. However, under our experimental conditions, cells divided only once in 60 h in the presence of insulin.


Assuntos
Ciclo Celular/efeitos dos fármacos , Insulina/farmacologia , Células 3T3 , Animais , Contagem de Células/efeitos dos fármacos , Divisão Celular/efeitos dos fármacos , Replicação do DNA/efeitos dos fármacos , Citometria de Fluxo , Fluoresceínas/metabolismo , Corantes Fluorescentes , Interfase/fisiologia , Camundongos , Mitose/efeitos dos fármacos , Mitose/fisiologia , Fase S/fisiologia , Succinimidas/metabolismo
12.
Mol Cell Biol ; 16(10): 5419-26, 1996 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-8816454

RESUMO

The proximal sequence element (PSE)-binding transcription factor (PTF), which binds the PSE of both RNA polymerase II- and RNA polymerase III-transcribed mammalian small nuclear RNA (snRNA) genes, is essential for their transcription. We previously reported the purification of human PTF, a complex of four subunits, and the molecular cloning and characterization of PTF gamma and delta subunits. Here we describe the isolation and expression of a cDNA encoding PTF beta, as well as functional studies using anti-PTF beta antibodies. Native PTF beta, in either protein fractions or a PTF-Oct-1-DNA complex, can be recognized by polyclonal antibodies raised against recombinant PTF beta. Immunodepletion studies show that PTF beta is required for transcription of both classes of snRNA genes in vitro. In addition, immunoprecipitation analyses demonstrate that substantial and similar molar amounts of TATA-binding protein (TBP) and TFIIIB90 can weakly associate with PTF at low salt conditions, but this association is dramatically reduced at high salt concentrations. Along with our previous demonstration of both physical interactions between PTF gamma/PTF delta and TBP and the involvement of TFIIIB90 in the transcription of class III snRNA genes, these results are consistent with the notion that a TBP-containing complex related to TFIIIB is required for the transcription of class III snRNA genes, and acts through weak interaction with the four-subunit PTF.


Assuntos
Proteínas de Ligação a DNA/metabolismo , RNA Polimerase II/metabolismo , RNA Polimerase I/metabolismo , RNA Nuclear Pequeno/genética , Fatores de Transcrição/metabolismo , Transcrição Gênica , Sequência de Aminoácidos , Linfócitos B , Sequência de Bases , Núcleo Celular/metabolismo , Clonagem Molecular , Proteínas de Ligação a DNA/biossíntese , Proteínas de Ligação a DNA/química , Escherichia coli , Biblioteca Gênica , Células HeLa , Humanos , Immunoblotting , Cinética , Substâncias Macromoleculares , Dados de Sequência Molecular , Proteínas Recombinantes/metabolismo , Fatores de Transcrição/biossíntese , Fatores de Transcrição/química
13.
J Nat Prod ; 59(10): 985-6, 1996 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-8984163

RESUMO

Three pigments of the guaiazulene class have been isolated from the gorgonian Calicogorgia granulosa. Structures of these compounds have been determined as guaiazulene, 2,2'- diguaiazulenylmethane, and a new compound, 2,2'-biguaiazulenyl, by combined chemical and spectroscopic methods. 2,2'-Biguaiazulenyl exhibited moderate antimicrobial activity.


Assuntos
Anti-Infecciosos/isolamento & purificação , Cnidários/química , Sesquiterpenos/isolamento & purificação , Animais , Antibacterianos , Anti-Infecciosos/farmacologia , Antifúngicos/isolamento & purificação , Antifúngicos/farmacologia , Azulenos , Bacillus subtilis/efeitos dos fármacos , Candida albicans/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Testes de Sensibilidade Microbiana , Sesquiterpenos/farmacologia , Sesquiterpenos de Guaiano
14.
Mol Cell Biol ; 16(2): 503-12, 1996 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8552077

RESUMO

The major histocompatibility complex (MHC) class II Ea promoter is dependent on the presence of conserved upstream X and Y boxes and of initiator (Inr) sequences. In vitro transcription analysis of the Inr region with linker-scanning mutants pinpoints a functionally essential element that shows homology to the terminal deoxynucleotidyltransferase (TdT) Inr; contrary to the TdT Inr and other Inrs identified so far, the key sequence, between positions +5 and +12, is located within a transcribed area. Swapping the TdT sequence into the corresponding Ea position leads to a fivefold increase in transcription rate, without altering start site selection. Inr-binding proteins LBP-1/CP2 and TIP--a TdT Inr-binding protein unrelated to YY1--recognize the Ea Inr; they interact with overlapping yet distinct sequences around the Cap site, but their binding does not coincide with Ea Inr activity. A good correlation is, rather, found with binding of immunopurified holo-TFIID to this element. TFIID interacts both with Ea TATA-like and Inr sequences, but only the latter is functionally relevant. Unlike TBP, TFIID binds in the absence of TFIIA, indicating a stabilizing role for TBP-associated factors in Ea promoter recognition. Sequence comparison with other mouse and human MHC class II promoters suggests a common mechanism of start site(s) selection for the MHC class II gene family.


Assuntos
Genes MHC da Classe II , Regiões Promotoras Genéticas , Fatores de Transcrição/metabolismo , Animais , Sequência de Bases , Sítios de Ligação , Análise Mutacional de DNA , Proteínas de Ligação a DNA/metabolismo , Humanos , Camundongos , Dados de Sequência Molecular , Fosfoproteínas/metabolismo , Mutação Puntual , Ligação Proteica , Fator de Transcrição TFIID , Transcrição Gênica , Proteínas Virais/metabolismo
15.
Mol Cell Biol ; 16(1): 1-9, 1996 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-8524284

RESUMO

The proximal sequence element (PSE)-binding transcription factor (PTF) specifically recognizes the PSEs of both RNA polymerase II- and RNA polymerase III-transcribed small nuclear RNA (snRNA) genes. We previously have shown that PTF purified from human HeLa cells is a multisubunit complex of four polypeptides designated PTF alpha, -beta, -gamma, and -delta. We now report the isolation and expression of cDNAs encoding PTF gamma and PTF delta, as well as functional studies with cognate antibodies that recognize the native PTF complex in HeLa extracts. Immunoprecipitation studies confirm that the four PTF subunits originally found to copurify during conventional chromatography indeed form a tightly associated complex; they further show that the PTF so defined, including the gamma and delta subunits specifically, is essential for transcription of both class II and class III snRNA genes. Immunoprecipitation assays also show a weak substoichiometric association of the TATA-binding protein (TBP) with PTF, consistent with the previous report of a PTF-related complex (SNAPc) containing substoichiometric levels of TBP and a component (SNAPc43) identical in sequence to the PTF gamma reported here. Glutathione S-transferase pulldown assays further indicate relatively strong direct interactions of both recombinant PTF gamma and PTF delta with TBP, consistent either with the natural association of TBP with PTF in a semistable TBP-TBP-associated factor complex or with possible functional interactions between PSE-bound PTF and TATA-bound TBP during promoter activation. In addition, we show that in extracts depleted of TBP and TBP-associated factors, transcription from the U1 promoter is restored by recombinant TBP but not by TFIID or TFIIIB, indicating that transcription of class II snRNA genes requires a TBP complex different from the one used for mRNA-encoding genes.


Assuntos
Proteínas de Ligação a DNA/metabolismo , RNA Nuclear Pequeno/genética , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Sequência de Aminoácidos , Animais , Anticorpos , Sequência de Bases , Clonagem Molecular , Primers do DNA/genética , DNA Complementar/genética , Células HeLa , Humanos , Dados de Sequência Molecular , Conformação Proteica , RNA Polimerase II/metabolismo , RNA Polimerase III/genética , Coelhos , Proteínas Recombinantes/genética , Proteínas Recombinantes/imunologia , TATA Box , Proteína de Ligação a TATA-Box , Fatores de Transcrição/química , Transcrição Gênica
16.
Mol Cell Biol ; 15(4): 2019-27, 1995 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-7891697

RESUMO

The proximal sequence element (PSE), found in both RNA polymerase II (Pol II)- and RNA Pol III-transcribed small nuclear RNA (snRNA) genes, is specifically bound by the PSE-binding transcription factor (PTF). We have purified PTF to near homogeneity from HeLa cell extracts by using a combination of conventional and affinity chromatographic methods. Purified PTF is composed of four polypeptides with apparent molecular masses of 180, 55, 45, and 44 kDa. A combination of preparative electrophoretic mobility shift and sodium dodecyl sulfate-polyacrylamide gel electrophoresis analyses has conclusively identified these four polypeptides as subunits of human PTF, while UV cross-linking experiments demonstrate that the largest subunit of PTF is in close contact with the PSE. The purified PTF activates transcription from promoters of both Pol II- and Pol III-transcribed snRNA genes in a PSE-dependent manner. In addition, we have investigated factor requirements in transcription of Pol III-dependent snRNA genes. We show that in extracts that have been depleted of TATA-binding protein (TBP) and associated factors, recombinant TBP restores transcription from U6 and 7SK promoters but not from the VAI promoter, whereas the highly purified TBP-TBP-associated factor complex TFIIIB restores transcription from the VAI but not the U6 or 7SK promoter. Furthermore, by complementation of heat-treated extracts lacking TFIIIC activity, we show that TFIIIC1 is required for transcription of both the 7SK and VAI genes, whereas TFIIIC2 is required only for transcription of the VAI gene. From these observations, we conclude (i) that PTF and TFIIIC2 function as gene-specific as gene-specific factors for PSE-and B-box-containing Pol III genes, respectively, (ii) that the form of TBP used by class III genes with upstream promoter elements differs from the from used by class III genes with internal promoters, and (iii) that TFIIIC1 is required for both internal and external Pol III promoters.


Assuntos
RNA Polimerase III/metabolismo , RNA Polimerase II/metabolismo , RNA Nuclear Pequeno/biossíntese , Fatores de Transcrição TFIII , Fatores de Transcrição/metabolismo , Transcrição Gênica , Sequência de Bases , Proteínas de Ligação a DNA/metabolismo , Células HeLa , Humanos , Modelos Genéticos , Dados de Sequência Molecular , Ligação Proteica , Conformação Proteica , Sequências Reguladoras de Ácido Nucleico , Fatores de Transcrição/isolamento & purificação
17.
J Biol Chem ; 270(5): 2274-83, 1995 Feb 03.
Artigo em Inglês | MEDLINE | ID: mdl-7836461

RESUMO

The cellular factor, LBP-1, can repress HIV-1 transcription by preventing the binding of TFIID to the promoter. Here we have analyzed the effect of recombinant LBP-1 on HIV-1 transcription in vitro by using a "pulse-chase" assay. LBP-1 had no effect on initiation from a preformed preinitiation complex and elongation to position +13 ("pulse"). However, addition of LBP-1 after RNA polymerase was stalled at +13 strongly inhibited further elongation ("chase") by reducing RNA polymerase processivity. Severe mutations of the high affinity LBP-1 binding sites between -4 and +21 did not relieve the LBP-1-dependent block. However, LBP-1 could bind independently to upstream low affinity sites (-80 to -4), suggesting that these sites mediate the effect of LBP-1 on elongation. These results demonstrate a novel function of LBP-1, restricting HIV-1 transcription at the level of elongation. In addition, Tat was found to suppress the antiprocessivity effect of LBP-1 on HIV-1 transcription in nuclear extracts. These findings strongly suggest that LBP-1 may provide a natural mechanism for restricting the elongation of HIV-1 transcripts and that this may be a target for the action of Tat in enhancing transcription.


Assuntos
Proteínas de Ligação a DNA/fisiologia , RNA Polimerases Dirigidas por DNA/metabolismo , HIV-1/genética , RNA Viral/biossíntese , Proteínas Repressoras/fisiologia , Sequência de Bases , Regulação Viral da Expressão Gênica , Produtos do Gene tat/metabolismo , Células HeLa , Humanos , Técnicas In Vitro , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Regiões Promotoras Genéticas , Proteínas Recombinantes , Relação Estrutura-Atividade , TATA Box , Fatores de Transcrição , Transcrição Gênica , Produtos do Gene tat do Vírus da Imunodeficiência Humana
18.
Mol Cell Biol ; 14(3): 1776-85, 1994 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-8114710

RESUMO

LBP-1 is a cellular protein which binds strongly to sequences around the human immunodeficiency virus type 1 (HIV-1) initiation site and weakly over the TATA box. We have previously shown that LBP-1 represses HIV-1 transcription by inhibiting the binding of TFIID to the TATA box. Four similar but distinct cDNAs encoding LBP-1 (LBP-1a, -b, -c, and -d) have been isolated. These are products of two related genes, and each gene encodes two alternatively spliced products. Comparison of the amino acid sequence of LBP-1 with entries in the available protein data bases revealed the identity of LBP-1c to alpha-CP2, an alpha-globin transcription factor. These proteins are also homologous to Drosophila melanogaster Elf-1/NTF-1, an essential transcriptional activator that functions during Drosophila embryogenesis. Three of the recombinant LBP-1 isoforms show DNA binding specificity identical to that of native LBP-1 and bind DNA as a multimer. In addition, antisera raised against recombinant LBP-1 recognize native LBP-1 from HeLa nuclear extract. Functional analyses in a cell-free transcription system demonstrate that recombinant LBP-1 specifically represses transcription from a wild-type HIV-1 template but not from an LBP-1 mutant template. Moreover, LBP-1 can function as an activator both in vivo and in vitro, depending on the promoter context. Interestingly, one isoform of LBP-1 which is missing the region of the Elf-1/NTF-1 homology is unable to bind DNA itself and, presumably through heteromer formation, inhibits binding of the other forms of LBP-1, suggesting that it may function as a dominant negative regulator.


Assuntos
Proteínas de Ligação a DNA/genética , Regulação Viral da Expressão Gênica , HIV-1/genética , Proteínas Repressoras/genética , Fatores de Transcrição/genética , Sequência de Aminoácidos , Sequência de Bases , Sítios de Ligação , Clonagem Molecular , Primers do DNA/química , Genes , Células HeLa , Humanos , Dados de Sequência Molecular , Proteínas Recombinantes , Mapeamento por Restrição , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Transcrição Gênica
19.
J Am Coll Nutr ; 12(6): 638-42, 1993 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-8294718

RESUMO

Hepatic fatty acid-binding protein (FABP) is one of several abundant proteins which may participate in fatty acid uptake and utilization. Using differential hybridization to screen for growth hormone-responsive gene products, a complementary deoxyribonucleic acid (cDNA) was isolated which proved to be a hepatic FABP cDNA fragment. Hypophysectomy caused a 60% reduction in hepatic FABP messenger ribonucleic acid (mRNA) levels in rat liver, and growth hormone administration to hypophysectomized rats resulted in restoration of the expression of hepatic FABP mRNA. Other pituitary hormones did not alter these changes in expression. The response to growth hormone occurred within 4 hours of administration. During development, expression of hepatic FABP mRNA in rat liver was low in late fetal life, with increases to 40% of adult values by day 2 of life. Significant increases to adult levels did not occur until after day 25, when weaning is essentially completed. Alteration of hepatic FABP mRNA expression by growth hormone in rat liver may be important in the complex regulation of fatty acid uptake and metabolism.


Assuntos
Proteínas de Transporte/genética , Regulação da Expressão Gênica/efeitos dos fármacos , Fígado/metabolismo , Proteínas de Neoplasias , Proteínas do Tecido Nervoso , RNA Mensageiro/metabolismo , Animais , Northern Blotting , Proteína 7 de Ligação a Ácidos Graxos , Proteínas de Ligação a Ácido Graxo , Hormônio do Crescimento/farmacologia , Hipofisectomia , Cinética , Fígado/embriologia , Fígado/crescimento & desenvolvimento , Masculino , Hibridização de Ácido Nucleico , Ratos
20.
Mol Cell Biol ; 12(7): 3247-61, 1992 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-1535687

RESUMO

The promoters of both RNA polymerase II- and RNA polymerase III-transcribed small nuclear RNA (snRNA) genes contain an essential and highly conserved proximal sequence element (PSE) approximately 55 bp upstream from the transcription start site. In addition, the upstream enhancers of all snRNA genes contain binding sites for octamer-binding transcription factors (Octs), and functional studies have indicated that the PSE and octamer elements work cooperatively. The present study has identified and characterized a novel transcription factor (designated PTF) which specifically binds to the PSE sequence of both RNA polymerase II- and RNA polymerase III-transcribed snRNA genes. PTF binding is markedly potentiated by Oct binding to an adjacent octamer site. This potentiation is effected by Oct-1, Oct-2, or the conserved POU domain of these factors. In agreement with these results and despite the independent binding of Octs to the promoter, PTF and Oct-1 enhance transcription from the 7SK promoter in an interdependent manner. Moreover, the POU domain of Oct-1 is sufficient for significant in vitro activity in the presence of PTF. These results suggest that essential activation domains reside in PTF and that the potentiation of PTF binding by Octs plays a key role in the function of octamer-containing snRNA gene enhancers.


Assuntos
RNA Nuclear Pequeno/genética , Sequências Reguladoras de Ácido Nucleico/genética , Fatores de Transcrição/genética , Sequência de Bases , Mapeamento Cromossômico , Sondas de DNA/metabolismo , Proteínas de Ligação a DNA/genética , Elementos Facilitadores Genéticos/genética , Fator C1 de Célula Hospedeira , Humanos , Dados de Sequência Molecular , Fator 1 de Transcrição de Octâmero , Fator 2 de Transcrição de Octâmero , Regiões Promotoras Genéticas/genética , RNA Polimerase II/genética , RNA Polimerase III/genética , Ribonucleoproteínas/genética , Ribonucleoproteínas Nucleares Pequenas , Fatores de Transcrição/isolamento & purificação , Transcrição Gênica
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