A pharmacogenetics study of TPMT and ITPA genes detects a relationship with side effects and clinical response in patients with inflammatory bowel disease receiving Azathioprine.

BACKGROUND AND AIMS: Pharmacogenetic studies in inflammatory bowel diseases (IBD) are mainly focused on genes involved in the metabolism of Azathioprine (AZA). Use of AZA is limited by its toxicity, which occurs in 20-30% of patients. Variants in the Thiopurine S-methyltransferase (TPMT) and Inosine triphosphate pyrophosphatase (ITPA) genes have been associated with AZA toxicity, but also can contribute to the lack of response. The aims of this study were to determine the contribution of TPMT and ITPA variants in the development of AZA-related toxicity and response. METHODS: Variants associated with the decrease of enzyme activity in TPMT and ITPA genes were genotyped with the Snapshot system in 232 IBD patients treated with AZA, and correlated with the clinical response and development of adverse drug reactions in a retrospective case-control study. RESULTS: Genotypic analysis showed that there is a statistical significance between c.94C > A variant on ITPA gene with non response to AZA treatment (p=0.005) and arthralgia (OR 8.2353; 95%CI 1.752-38.87, p=0.0041), as well as between mutant TPMT alleles and myelosuppression (OR 7.5; 95%CI 1.4456-38.91, p=0.0304). CONCLUSIONS: There is a positive correlation between c.94C > A variant on ITPA with clinical response. Mutant alleles on TPMT and the variant c.94C > A on ITPA gene predict side effects induced by AZA in our population (myelosuppression and arthralgia).

Petty-Laxova-Wiedemann progeroid syndrome: further phenotypical delineation and confirmation of a rare syndrome of premature aging.

A 10-year-old boy with manifestations of Petty-Laxova-Wiedemann progeroid syndrome (PLWPS), a rare neonatal progeroid condition, is described and compared with those previously reported. Clinical manifestation include: severe pre- and postnatal growth retardation, "progeroid" face, large open fontanelle in infancy, umbilical hernia at birth, pseudomacrocephaly, wide calvaria, sparse scalp hair, markedly diminished subcutaneous fat, scoliosis, partial cutaneous syndactyly, aplastic and hypoplastic distal phalanges with aplasia and hypoplasia of nails, undescended testes, and normal cognitive and motor development. This appears to be one of only a handful of cases of PLWPS reported in an older child or adult.

Use of short tandem repeats loci to study the genetic structure of several populations from Zulia State, Venezuela.

Genetic relationships between populations can be studied by comparing genotypic and allelic similarities. This investigation aims to demonstrate that selected autosomal microsatellite markers could be used to study the genetic structures of different populations living in northwest Venezuela, in Zulia State. Seven autosomal systems (CSF1PO, TPOX, TH01, vWA, D7S820, D13S317, and D5S818) were tested by PCR in a multiplex format on 688 different chromosomes from unrelated individuals living in Maracaibo, "Isla de Toas," and "San José de Heras," and from two Amerindian populations from the "Sierra de Perijá," Barí' and Yukpa. Allele frequencies, Hardy-Weinberg equilibria, genetic distances, phylogenetic trees, and ethnic admixtures were estimated. The study shows the existence of a clear genetic difference among these populations in accordance with their historic evolution. The populations of Maracaibo and "Isla de Toas" showed a triracial origin, with a large European contribution, followed by an Amerindian component and a small African component. The indigenous groups, Barí' and Yukpa, showed exclusively an Amerindian component, and "San José de Heras" showed only an African component. These results indicate that microsatellite markers are useful for molecular anthropology in a regional and worldwide context and provide important genetic information about contemporary populations of Venezuela.

Detección de portadoras de distrofia muscular Duchenne/Becker a través del análisis de loci STRs ligados al gen de la distrofina en familias venezolanas / Carrier Detection of muscular dystrophy Duchenne/Becker by analysis de STRs loci linked to the gene of the distrofina in venezuelan families

La Distrofia Muscular tipo Duchenne/Becker (DMD/DMB) es una enfermedad letal recesiva ligada al cromosoma X; el riesgo de recurrencia en una mujer portadora de DMD/DMB es de 50 por ciento de hijos sanos y 50 por ciento de hijos enfermos, 50 por ciento de hijas no portadoras y 50 por ciento de hijas portadoras, en cada gestación. El diagnóstico de DMD/DMB en una familia establece la necesidad de detectar a las mujeres portadoras con la finalidad de poder establecer el asesoramiento genético y el diagnóstico prenatal. El análisis de los polimorfismos de repeticiones cortas en tandem (STRs) localizados en los extremos 5, 3ïe intrones 44, 45, 49 y 50 del gen de la Distrofina se han utilizado para determinar los haplotipos en personas normales y en riesgo, a través de establecer el ligamiento genético entre el gen mutado y el haplotipo segregado. Se analizaron 105 individuos provenientes de 15 familias venezolanas con DMD/DMB, con uno o más afectados y 7 varones no emparentados. De los 105 individuos, 37 eran varones (26 afectados y 11 sanos) y 68 mujeres. Se amplificaron las secuencias STRs (STR44, STR45, STR49, STR 50 y STR3ïDYS) del gen de la distrofina por reacción en cadena de la polimerasa y se analizaron loa alelos polimórficos en los individuos estudiados. En 5/15 (33 por ciento) familias demostró la deleción de uno o varios exones. De las 68 mujeres, 27 (39,7 por ciento) resultaron portadoras, 27 (39,7 por ciento) no portadoras y en 14 (20,58 por ciento) no se pudo establecer un diagnóstico definitivo. En conclusión esta investigación pudo establecer el diagnóstico en 79,4 por ciento de las mujeres. Además en una familia se demostró que la mutación original ocurrió con el cromosoma X del abuelo materno, en otra se hizo el diagnóstico directo de portadora por hemicigosidad para el alelo mutado y en otra fue posible el diagnóstico prenatal. No se pudo excluir el mosaicismo germinal en 3 casos

[Carrier detection of Duchenne/Becker muscular dystrophy by analysis of STRs loci linked to the gene of dystrophin in Venezuelan families]. / Detección de portadoras de distrofia muscular Duchenne/Becker a través del análisis de loci STRs ligados al gen de la distrofina en familias venezolanas.

The Duchenne/Becker Muscular Dystrophy (DMD/BMD) is an X linked recessive lethal disease. The female carrier will transmit the disease gene to half of her sons and half of her daughters; half of the daughters will be carriers, while half will be normal. Half of the sons will be normal and, on average, half will have the disease. It is of particular relevance to be able to detect carrier status among female relatives of the patients for genetic counseling and prenatal diagnosis. The method of Short Tandem Repeat (STR) sequence polymorphism analysis can determine haplotype at normal status or at risk status and, to establish genetic linkage between the mutated gene and the segregated haplotype. We have analyzed 105 members from 15 unrelated Venezuelan families with one or more siblings affected with DMD/DMB and 7 unrelated males. Of the 105, 37 were male (26 affected and 11 normal) and 68 were female. STR sequences (STR44, STR45, STR49, STR50, STR3'DYS) of the gene of the Dystrophin were amplified by polymerase chain reaction (PCR) to analyze allelic polymorphism in the families. Five of the 15 families (33%) had a deletion of one or several of the exons. Of the 68 females, 27 (39.7%) were carriers, 27 (39.7%) were non-carriers and in 14 cases (20.58%) it was not possible to reach a definitive diagnosis. The definitive diagnosis could be established in 79% of the females. This analysis also shows that the mutation occurred on the grandpaternal X chromosome in one family. Hemizygocity was detected and carrier status ascertained in the mother of other patient and in one family we were able to do prenatal diagnosis. The germinal mosaicism could not be excluded in 3 patients.