High-throughput phenotyping using VIS/NIR spectroscopy in the classification of soybean genotypes for grain yield and industrial traits.

Employing visible and near infrared sensors in high-throughput phenotyping provides insight into the relationship between the spectral characteristics of the leaf and the content of grain properties, helping soybean breeders to direct their program towards improving grain traits according to researchers' interests. Our research hypothesis is that the leaf reflectance of soybean genotypes can be directly related to industrial grain traits such as protein and fiber contents. Thus, the objectives of the study were: (i) to classify soybean genotypes according to the grain yield and industrial traits; (ii) to identify the algorithm(s) with the highest accuracy for classifying genotypes using leaf reflectance as model input; (iii) to identify the best input data for the algorithms to improve their performance. A field experiment was carried out in randomized block design with three replications and 32 soybean genotypes. At 60 days after emergence, spectral analysis was carried out on three leaf samples from each plot. A hyperspectral sensor was used to capture reflectance between the wavelengths from 450 to 824 nm. Representative spectral bands were selected and grouped into means. After harvest, grain yield was assessed and laboratory analyses of industrial traits were carried out. Spectral, industrial traits and yield data were subjected to statistical analysis. Data were analyzed by the following machine learning algorithms: J48 (J48) and REPTree (DT) decision trees, Random Forest (RF), Artificial Neural Networks (ANN), Support Vector Machine (SVM), and conventional Logistic Regression (LR) analysis. The clusters formed were used as the output of the models, while two groups of input data were used for the input of the models: the spectral variables (WL) noise-free obtained by the sensor (450-828 nm) and the spectral means of the selected bands (SB) (450.0-720.6 nm). Soybean genotypes were grouped according to their grain yield and industrial traits, in which the SVM and J48 algorithms performed better at classifying them. Using the spectral bands selected in the study improved the classification accuracy of the algorithms.

Dynamics of major environmental disasters involving fire in the Brazilian Pantanal.

The 2020 environmental catastrophe in Pantanal has highlighted the fragility of environmental policies and practices for managing and fighting fires in this biome. Therefore, it is essential to know the causes and circumstances that potentiate these fires. This study aimed to: (I) assess the relationship between fire foci and carbon absorption (GPP), precipitation, and carbon dioxide (CO2) flux; (ii) analyze vegetation recovery using the differenced normalized burn ratio (ΔNBR) in Brazilian Pantanal between 2001 and 2022; and (iii) identify priority areas, where the highest intensities of fire foci have occurred, in order to guide public policies in Brazil to maintain local conservation. To this purpose, fire foci were detected using data from the MODIS MOD14/MYD14 algorithm, annual precipitation with CHIRPS (Climate Hazards Group InfraRed Precipitation with Station data), and CO2 flux using the MODIS/MODO9A1 product, and Gross Primary Production (GPP) with the MODIS/MOD17A2 product. The severity of the burned area was also assessed using the ΔNBR index and the risk areas were determined using the averages of these images. During the time series studied, a total of 300,127 fire foci were detected throughout the Pantanal, where 2020 had the highest number of foci and the lowest accumulated precipitation. The years with the highest precipitation were 2014 and 2018. The year 2018 was also the second year with the highest GPP value. The Pettit test showed a trend for 2008 and 2011 as the points of change in the CO2 flux and GPP variables. Principal component analysis clustered fire foci and precipitation on opposite sides, as well as GPP and CO2 flux, while ΔNBR clustered HS, MHS and MLS classes with the years 2020, 2019, 2002 and 2021. There was a high negative correlation between fire foci × rainfall and GPP × CO2 flux. The years with the largest areas of High severity (HS), Moderate-high severity (MHS) and Moderate-low severity (MLS) classes were 2020 and 2019, respectively. The most vulnerable areas for severe fires were the municipalities of Cáceres, Poconé, and Corumbá. The major fire catastrophe in 2020 is correlated with the low precipitation in 2019, the high precipitation in 2018, and the increased GPP, as well government policies unfavorable to the environment.

Effect of land uses and land cover on soil attributes in the southern Brazilian Amazon.

The growth of the world population has led to the expansion of agricultural areas to produce food that meets world demand, making it necessary to increase productivity and maintain environmental sustainability in these areas. Seeking sustainable food production, the agricultural use of soil must be assessed in view of optimal use or land as natural resource, as well as minimize the effects of global warming related to land use and land cover (LULC). We hypothesize that different LULC affects Amazonian soil attributes. In this study, the effect of different LULC in the southern Brazilian Amazon, namely, native forest, pasture, and rice and soybean crops, on the spatial variability of soil fertility and texture was assessed, seeking to obtain information that will guide farmers in the near future to better exploit their areas and contribute to a more sustainable agriculture. Descriptive statistical analysis was performed for the pH, H + Al, Al, Ca, Mg, P, K, Cu, Fe, Mn, Zn, V, m, organic matter, clay, silt, and sand values from soil samples under different LULC. To verify the data normality, the Shapiro-Wilk test at 5% significance was performed. Outlier analysis using boxplot graphics, principal component analysis (PCA), and cluster analysis was performed. Data were submitted to geostatistical analysis to verify the spatial dependence degree of the variables through semivariograms for interpolated kriging maps. Except for silt, all variables were well represented in the factor map. PCA revealed that the data variability can be explained mainly by pH, V, Ca, K, and Zn values, which are inversely proportional to m, P, and sand. Through geostatistical analysis, spatial dependence ranging from moderate to strong was observed, generating reliability in the prediction of most attributes in pasture, rice, and soybean areas. Yet, a spatial dependence ranging from moderate to strong was found, generating reliability in the prediction of most attributes in pasture, rice, and soybean areas. Our findings reveal a lower fertility and higher acidity in forest areas, whereas crop areas presented the opposite result.

Investigation of pre and post environmental impact of the lockdown (COVID-19) on the water quality of the Capibaribe and Tejipió rivers, Recife metropolitan region, Brazil.

The coronavirus pandemic has seriously affected human health, although some improvements on environmental indexes have temporarily occurred, due to changes on socio-cultural and economic standards. The objective of this study was to evaluate the impacts of the coronavirus and the influence of the lockdown associated with rainfall on the water quality of the Capibaribe and Tejipió rivers, Recife, Northeast Brazil, using cloud remote sensing on the Google Earth Engine (GEE) platform. The study was carried out based on eight representative images from Sentinel-2. Among the selected images, two refer to the year 2019 (before the pandemic), three refer to 2020 (during a pandemic), two from the lockdown period (2020), and one for the year 2021. The land use and land cover (LULC) and slope of the study region were determined and classified. Water turbidity data were subjected to descriptive and multivariate statistics. When analyzing the data on LULC for the riparian margin of the Capibaribe and Tejipió rivers, a low permanent preservation area was found, with a predominance of almost 100% of the urban area to which the deposition of soil particles in rivers are minimal. The results indicated that turbidity values in the water bodies varied from 6 mg. L-1 up to 40 mg. L-1. Overall, the reduction in human-based activities generated by the lockdown enabled improvements in water quality of these urban rivers.

Reduction of pesticide application via real-time precision spraying.

Farmers focus on reducing the cost of production and aim to increase profit. The objective of this study was to quantify the reduction of pesticides applied to soybean (Glycine max (L.) Merrill) and maize (Zea mays L.) crops in several stages of the production cycle using a site-specific spraying application based on real-time sensors in the Brazilian Cerrado region. The sprayers were equipped with a precision spraying control system based on a real-time sensor. The spraying operations were performed not only for herbicide, but also for fungicide and insecticides applications. The maps recorded the percentage of the spray boom when the application was turned on (on/off spray system) with nozzle-to-nozzle control. The precision spraying system based on real-time sensors reduced the volume of pesticides (including herbicides, insecticides, and fungicides) applied to soybean and maize crops. There was a more significant reduction in the volume of pesticides applied post-emergence of the crops in the initial stages of soybean and maize when the crops had less leaf area or less foliage coverage between the rows. The cost reduction achieved using this technology was 2.3 times lower than the cost associated with pesticide application over the entire area using a conventional sprayer. Under the experimental conditions, there were no differences in the average crop yield, compared to the historical productivity of soybean and maize crops by applying this technology because the recommended doses were not affected and the site of application was limited to points where the presence of plants was present was detected.

High-throughput phenotyping allows the selection of soybean genotypes for earliness and high grain yield.

BACKGROUND: Precision agriculture techniques are widely used to optimize fertilizer and soil applications. Furthermore, these techniques could also be combined with new statistical tools to assist in phenotyping in breeding programs. In this study, the research hypothesis was that soybean cultivars show phenotypic differences concerning wavelength and vegetation index measurements. RESULTS: In this research, we associate variables obtained via high-throughput phenotyping with the grain yield and cycle of soybean genotypes. The experiment was carried out during the 2018/2019 and 2019/2020 crop seasons, under a randomized block design with four replications. The evaluated soybean genotypes included 7067, 7110, 7739, 8372, Bonus, Desafio, Maracai, Foco, Pop, and Soyouro. The phenotypic traits evaluated were: first pod height (FPH), plant height (PH), number of branches (NB), stem diameter (SD), days to maturity (DM), and grain yield (YIE). The spectral variables evaluated were wavelengths and vegetation indices (NDVI, SAVI, GNDVI, NDRE, SCCCI, EVI, and MSAVI). The genotypes Maracai and Foco showed the highest grain yields throughout the crop seasons, in addition to belonging to the groups with the highest means for all VIs. YIE was positively correlated with the NDVI and certain wavelengths (735 and 790 nm), indicating that genotypes with higher values for these spectral variables are more productive. By path analyses, GNDVI and NDRE had the highest direct effects on the dependent variable DM, while NDVI had a higher direct effect on YIE. CONCLUSIONS: Our findings revealed that early and productive genotypes can be selected based on vegetation indices and wavelengths. Soybean genotypes with a high grain yield have higher means for NDVI and certain wavelengths (735 and 790 nm). Early genotypes have higher means for NDRE and GNDVI. These results reinforce the importance of high-throughput phenotyping as an essential tool in soybean breeding programs.

Twenty-year impact of fire foci and its relationship with climate variables in Brazilian regions.

In recent years, Brazil has become a major global contributor to the occurrence of national fires and greenhouse gas emissions. Therefore, this study aimed to evaluate the fire foci data of the past 20 years to determine their relationship with climatic variables in various Brazilian regions. The variables evaluated included fire foci, land surface temperature, rainfall, and standardized precipitation index, which were obtained via remote sensing from 2000 to 2019. The data were subjected to trend analyses (Mann-Kendall and Pettitt tests) and a multivariate analysis of canonical variables for evaluation. The results showed that the Midwest and North regions had the highest occurrence of fire foci throughout the study period, and that the North region had the highest accumulated annual rainfall. Thus, these regions require specific public policies to prevent future fires. Overall, the Midwest, Southeast, and South regions exhibit significant increasing fire foci tendencies. Our results reveal that this trend is related to the El Niño-Southern Oscillation (ENSO) phenomena, which alter climatic variables such as precipitation, land surface temperature, and the standardized precipitation index. Finally, the sugarcane growing area had a significant linear relationship with fire foci in the Southeast region, especially in the state of São Paulo, the major national sugarcane producer.

Advance of soy commodity in the southern Amazonia with deforestation via PRODES and ImazonGeo: a moratorium-based approach.

The guidance on decision-making regarding deforestation in Amazonia has been efficient as a result of monitoring programs using remote sensing techniques. Thus, the objective of this study was to identify the expansion of soybean farming in disagreement with the Soy Moratorium (SoyM) in the Amazonia biome of Mato Grosso from 2008 to 2019. Deforestation data provided by two Amazonia monitoring programs were used: PRODES (Program for Calculating Deforestation in Amazonia) and ImazonGeo (Geoinformation Program on Amazonia). For the identification of soybean areas, the Perpendicular Crop Enhancement Index (PCEI) spectral model was calculated using a cloud platform. To verify areas (polygons) of largest converted forest-soybean occurrences, the Kernel Density (KD) estimator was applied. Mann-Kendall and Pettitt tests were used to identify trends over the time series. Our findings reveal that 1,387,288 ha were deforested from August 2008 to October 2019 according to PRODES data, of which 108,411 ha (7.81%) were converted into soybean. The ImazonGeo data showed 729,204 hectares deforested and 46,182 hectares (6.33%) converted into soybean areas. Based on the deforestation polygons of the two databases, the KD estimator indicated that the municipalities of Feliz Natal, Tabaporã, Nova Ubiratã, and União do Sul presented higher occurrences of soybean fields in disagreement with the SoyM. The results indicate that the PRODES system presents higher data variability and means statistically superior to ImazonGeo.

Application of remote sensing in environmental impact assessment: a case study of dam rupture in Brumadinho, Minas Gerais, Brazil.

The collapse of mining tailing dams in Brumadinho, Minas Gerais, Brazil, that occurred in 2019 was one of the worst environmental and social disasters witnessed in the country. In this sense, monitoring any impacted areas both before and after the disaster is crucial to understand the actual scenario and problems of disaster management and environmental impact assessment. In order to find answers to that problem, the aim of this study was to identify and analyze the spatiality of the impacted area by rupture of the tailing dam of the Córrego do Feijão mine in Brumadinho, Minas Gerais, by using orbital remote sensing. Land use and land occupation, phytoplankton chlorophyll-a, water turbidity, total suspended solids on water, and carbon sequestration efficiency by vegetation (CO2Flux) were estimated by orbital imagery from the Landsat-8/OLI and MSI/Sentinel-2 sensors in order to assess the environmental impacts generated by the disaster. Data were extracted from spectral models in which the variables that best demonstrated the land use variation over the years were sought. Mean comparison by t-test was performed to compare the time series analyzed, that is, before and after the disaster. Through the analysis of water quality, it was observed that the environmental impact was calamitous to natural resources, especially water from Córrego do Feijão.

Rainfall in Brazilian Northeast via in situ data and CHELSA product: mapping, trends, and socio-environmental implications.

Rainfall is a climatic variable that dictates the daily rhythm of urban areas in Northeastern Brazil (NEB) and, therefore, understanding its dynamics is fundamental. The objectives of the study were (i) to validate the CHELSA product with data in situ, (ii) assess the spatial-temporality of the rains, and (iii) assess the trends and socio-environmental implications in the Metropolitan Region of Maceió (MRM). The monthly rainfall data observed between 1960 and 2016 were flawed and were filled with the imputation of data. These series were subjected to descriptive and exploratory statistics, statistical indicators, and the Mann-Kendall (MK) and Pettitt tests. CHELSA product was validated for MRM, and all stations obtained satisfactory determination coefficients (R2) and Pearson correlation (r). The standard error of the estimate (SEE), root mean square error (RMSE), and mean absolute error (MAE) were satisfactory. The highest annual rainfall accumulated occurred near the Mundaú and Manguaba lagoons. The Pettitt test identified that abrupt changes occur in El Niño and La Niña years (strong and weak). The monthly rain boxplots showed high variability in the rainy season (April-July). Outliers have been associated with extreme rainfall at MRM. The drought period was 5 months in all MRM seasons, except in Satuba and Pilar. The Mann-Kendall test and the Sen method showed a tendency for a significant increase in rainfall in Satuba and not significant in the Pilar, while in the others, there was a tendency for a decrease in rainfall. The MRM rainfall depends on physiographic factors, multiscale meteorological systems, and the coastal environment. These results will assist in planning conservationist practices, especially in areas of socio-environmental vulnerability.

Evaluation of the MOD11A2 product for canopy temperature monitoring in the Brazilian Atlantic Forest.

Forest canopies have an important influence on the global climate balance. Through the analysis of the temperature of the canopy, it is possible to infer about the physiological aspects of the plants, helping to understand the behavior of the vegetation and, consequently, in the environmental monitoring and management of green areas. This study aims to validate the MOD11A2 V006 product from canopy surface temperature data obtained by an infrared radiation sensor. For the validation of the MOD11A2 product, a comparative analysis was performed between the land surface temperature (LST) data, obtained by the MODIS sensor, and the canopy temperature data, obtained by the SI-111 infrared radiation sensor coupled to the Itatiaia National Park (PNI) micrometeorological tower. Meteorological variables and land surface temperature collected from January to December 2018 in the PNI were also analyzed. The results reveal that the MOD11A2 product overestimates the canopy temperature in the daytime (MB ranging from 1.56 to 3.57 °C) and underestimates in the night time (MB ranging from - 0.18 to - 4.22 °C). During daytime, the months corresponding to the dry season presented a very high correlation (r = 0.74 and 0.86) and the highest values for the Willmott index (d = 0.70 and 0.64). At nighttime, the MOD11A2 product did not present a good performance for the LST estimation, especially in the rainy season. Therefore, we observed that the MOD11A2 product has limitations to estimate the land surface temperature and that possible changes in the algorithm of this product can be performed for high atmospheric humidity conditions.

Persistent fire foci in all biomes undermine the Paris Agreement in Brazil.

Brazil is one of the world's biggest emitters of greenhouse gases (GHGs). Fire foci across the country contributes to these emissions and compromises emission reduction targets pledged by Brazil under the Paris Agreement. In this paper, we quantify fire foci, burned areas, and carbon emissions in all Brazilian biomes (i.e., Amazon, Cerrado, Caatinga, Atlantic Forest, Pantanal and Pampa). We analyzed these variables using cluster analysis and non-parametric statistics to predict carbon and CO2 emissions for the next decade. Our results showed no increase in the number of fire foci and carbon emissions for the evaluated time series, whereby the highest emissions occur and will persist in the Amazon and Cerrado biomes. The Atlantic Forest, Pantanal, Caatinga and Pampa biomes had low emissions compared to the Amazon and Cerrado. Based on 2030 projections, the sum of emissions from fire foci in the six Brazilian biomes will exceed 5.7 Gt CO2, compromising the national GHG reduction targets. To reduce GHG emissions, Brazil will need to control deforestation induced by the expansion of the agricultural frontier in the Amazon and Cerrado biomes. This can only be achieved through significant political effort involving the government, entrepreneurs and society as a collective.

Fire foci dynamics and their relationship with socioenvironmental factors and meteorological systems in the state of Alagoas, Northeast Brazil.

The objective is to evaluate the fire foci dynamics via environmental satellites and their relationship with socioenvironmental factors and meteorological systems in the state of Alagoas, Brazil. Data considered the period between 2000 and 2017 and was obtained from CPTEC/INPE. Annual and monthly analyzes were performed based on descriptive, exploratory (boxplot) and multivariate statistics analyzes (cluster analysis (CA), principal component analysis (PCA)) and Poisson regression models (based on 2000 and 2010 census data). CA based on the Ward method identified five fire foci homogeneous groups (G1 to G5), while Coruripe did not classify within any group (NA); therefore, the CA technique was consistent (CCC = 0.772). Group G1 is found in all regions of Alagoas, while G2, G5, and NA groups are found in Baixo São Francisco, Litoral, and Zona da Mata regions. Most fire foci were observed in the Litoral region. Seasonally, the largest records were from October to December months for all groups, influenced by the sugarcane harvesting period. The G4 group and Coruripe accounted for 60,767 foci (32.1%). The highest number of fire foci occurred in 2012 and 2015 (between 8000 and 9000 foci), caused by the action of the El Niño-Southern Oscillation. The Poisson regression showed that the dynamics of fire foci are directly associated with the Gini index and Human Development Index (models 1 and 3). Based on the PCA, the three components captured 78.8% of the total variance explained, and they were strongly influenced by the variables: population, GDP, and demographic density. The municipality of Maceió has the largest contribution from the fire foci, with values higher than 40%, and in PC1 and PC2 are related to urban densification and population growth.

Assessment of evapotranspiration estimates based on surface and satellite data and its relationship with El Niño-Southern Oscillation in the Rio de Janeiro State.

The need to validate the quality of evapotranspiration estimates is essential for this parameter which has extended its use. For this, it is necessary to evaluate both new remote sensing products that expand the areas of estimated evapotranspiration and empirical equations that provide estimates with different data requirements. In order to examine this problem, the present study compared the estimates of evapotranspiration obtained by remote sensing of the MOD16A2 product and seven empirical equations with the estimates obtained through the FAO-56 reference method, with data obtained from six meteorological stations in the State of Rio de Janeiro, Brazil. Data cover the period from 2007 to 2013, which contains different phases of the El Niño-Southern Oscillation phenomenon. The methods proposed by Valiantzas were those that obtained the best performances when compared with FAO-56 with R2 over 90%. The non-parametric analysis of Mann-Kendall for the six seasons was mostly not significant; only the station of Resende showed a tendency of significant growth during the El Niño episode (Z = 0.283 and p value = 0.050). The mangrove and forest classes were the ones that obtained the highest averages (3.75 mm d-1 and 3.62 mm d-1), where the gradient of evapotranspiration can be observed in the South-Northeast portions. The MOD16A2 orbital product was inferior to the methods that used surface meteorological station data.

Understanding the combining ability for physiological traits in soybean.

Photosynthetic efficiency has become the target of several breeding programs since the positive correlation between photosynthetic rate and yield in soybean suggests that the improvement of photosynthetic efficiency may be a promising target for new yield gains. However, studies on combining ability of soybean genotypes for physiological traits are still scarce in the literature. The objective of this study was to estimate the combining ability of soybean genotypes based on F2 generation aiming to identify superior parents and segregating populations for physiological traits. Twenty-eight F2 populations resulting from partial diallel crossings between eleven lines were evaluated in two crop seasons for the physiological traits: photosynthesis, stomatal conductance, internal CO2 concentration, and transpiration. General combining ability (GCA) of the parents and specific combining ability (SCA) of the F2 populations were estimated. Our findings reveal the predominance of additive effects in controlling the traits. The genotype TMG 7062 IPRO is the most promising parent for programs aiming at photosynthetic efficiency. We have also identified other promising parents and proposed cross-breeding with higher potential for obtaining superior lines for photosynthetic efficiency.

Spectral trend of vegetation with rainfall in events of El Niño-Southern Oscillation for Atlantic Forest biome, Brazil.

This study aimed to analyze the spectral trend of vegetation with rainfall in El Niño-Southern Oscillation events (ENSO) in the Atlantic Forest, Brazil. Monthly rainfall data were collected from 85 conventional meteorological stations (EMC), data from the Enhanced Vegetation Index 2 (EVI2) and ENSO events (El Niño, La Niña, and Neutral) in the period from 2001 to 2013. Afterwards, state cluster analysis was performed using the results of non-parametric tests. The Mann-Kendall (MK) non-parametric test did not identify a trend pattern in rainfall distribution in the Atlantic Forest. The results for EVI2 by state and region showed that the trend is decreasing in the Northeast Region, except for the states of Alagoas and Pernambuco. Southeast region showed an increasing trend of EVI2 (except for Rio de Janeiro and São Paulo), while the South region showed a decreasing trend. In the Midwest, the trend was significantly decreasing. In the prognosis elaborated for the future, the regions with significant declines of the vegetation were the Northeast and Midwest. This study shows that the Atlantic Forest in some regions of Brazil has been suffering from the growing urbanization process and there is a trend of soil degradation.