Genetic diversity of lion populations in Kenya: Evaluating past management practices and recommendations for future conservation actions.

The decline of lions (Panthera leo) in Kenya has raised conservation concerns about their overall population health and long-term survival. This study aimed to assess the genetic structure, differentiation and diversity of lion populations in the country, while considering the influence of past management practices. Using a lion-specific Single Nucleotide Polymorphism (SNP) panel, we genotyped 171 individuals from 12 populations representative of areas with permanent lion presence. Our results revealed a distinct genetic pattern with pronounced population structure, confirmed a north-south split and found no indication of inbreeding in any of the tested populations. Differentiation seems to be primarily driven by geographical barriers, human presence and climatic factors, but management practices may have also affected the observed patterns. Notably, the Tsavo population displayed evidence of admixture, perhaps attributable to its geographic location as a suture zone, vast size or past translocations, while the fenced populations of Lake Nakuru National Park and Solio Ranch exhibited reduced genetic diversity due to restricted natural dispersal. The Amboseli population had a high number of monomorphic loci likely reflecting a historical population decline. This illustrates that patterns of genetic diversity should be seen in the context of population histories and that future management decisions should take these insights into account. To address the conservation implications of our findings, we recommend prioritizing the maintenance of suitable habitats to facilitate population connectivity. Initiation of genetic restoration efforts and separately managing populations with unique evolutionary histories is crucial for preserving genetic diversity and promoting long-term population viability.

Effect of ecological and anthropogenic factors on grouping patterns in African lions across Kenya.

Social carnivores frequently live in fission-fusion societies, where individuals that share a common territory or home range may be found alone, in subgroups, or altogether. Absolute group size and subgroup size is expected to vary according to resource distribution, but for species that are susceptible to anthropogenic pressures, other factors may be important drivers. African lions (Panthera leo) are the only truly social felid and lion prides are characterized by fission-fusion dynamics with social groups frequently splitting and reforming, and subgroup membership can change continuously and frequently. The number of individuals in a group can be reflective of social, ecological, and anthropogenic conditions. This dynamic behavior makes understanding lion grouping patterns crucial for tailoring conservation measures. The evolution of group living in lions has been the topic of numerous studies, and we drew on these to formulate hypotheses relating to group size and subgroup size variation. Based on data collected from 199 lion groups across eight sites in Kenya, we found that group sizes were smaller when lions were closer to human settlements, suggesting that edge effects are impacting lions at a national scale. Smaller groups were also more likely when they were far from water, and were associated with very low and very high levels of non-tree vegetation. We found significant differences between the study sites, with the Maasai Mara having the largest groups (mean ± SD = 7.7 ± 4.7, range = 1-19), and Amboseli conservation area the smallest (4.3 ± 3.5, range = 1-14). While long-term studies within a single site are well suited to thoroughly differentiate between absolute group size and subgroup size, our study provides unique insight into the correlates of grouping patterns in a vulnerable species at a national scale.

Importance of natural land cover for plant species' conservation: A nationwide study in The Netherlands.

While shifts to high-intensity land cover have caused overwhelming biodiversity loss, it remains unclear how important natural land cover is to the occurrence, and thus the conservation, of different species groups. We used over 4 million plant species' observations to evaluate the conservation importance of natural land cover by its association with the occurrence probability of 1 122 native and 403 exotic plant species at 1 km resolution by species distribution models. We found that 74.9% of native species, 83.9% of the threatened species and 77.1% rare species preferred landscapes with over 50% natural land cover, while these landscapes only accounted for 15.6% of all grids. Most species preferred natural areas with a mixture of forest and open areas rather than areas with completely open or forested nature. Compared to native species, exotic species preferred areas with lower natural land cover and the cover of natural open area, but they both preferred extremely high and low cover of natural forest area. Threatened and rare species preferred higher natural land cover, either cover of natural forest area or cover of natural open area than not threatened and common species, but rare species were also more likely to occur in landscapes with 0-25% cover of natural open area. Although more natural land cover in a landscape will not automatically result in more native species, because there is often a non-linear increase in species occurrence probability when going from 0% to 100% natural land cover, for conserving purposes, over 80% natural land cover should be kept in landscapes for conserving threatened and very rare species, and 60% natural land cover is the best for conserving common native species. Our results stress the importance of natural areas for plant species' conservation. It also informs improvements to species conservation by increasing habitat diversity.

Experimental evidence for neonicotinoid driven decline in aquatic emerging insects.

There is an ongoing unprecedented loss in insects, both in terms of richness and biomass. The usage of pesticides, especially neonicotinoid insecticides, has been widely suggested to be a contributor to this decline. However, the risks of neonicotinoids to natural insect populations have remained largely unknown due to a lack of field-realistic experiments. Here, we used an outdoor experiment to determine effects of field-realistic concentrations of the commonly applied neonicotinoid thiacloprid on the emergence of naturally assembled aquatic insect populations. Following application, all major orders of emerging aquatic insects (Coleoptera, Diptera, Ephemeroptera, Odonata, and Trichoptera) declined strongly in both abundance and biomass. At the highest concentration (10 µg/L), emergence of most orders was nearly absent. Diversity of the most species-rich family, Chironomidae, decreased by 50% at more commonly observed concentrations (1 µg/L) and was generally reduced to a single species at the highest concentration. Our experimental findings thereby showcase a causal link of neonicotinoids and the ongoing insect decline. Given the urgency of the insect decline, our results highlight the need to reconsider the mass usage of neonicotinoids to preserve freshwater insects as well as the life and services depending on them.

Neonicotinoids and fertilizers jointly structure naturally assembled freshwater macroinvertebrate communities.

Although it is widely acknowledged that a decline of freshwater biodiversity jeopardizes the functioning of freshwater ecosystems, the large number of (human-induced) pressures jointly acting on these systems hampers managing its biodiversity. To disentangle the magnitude and the temporal effects of these single and interacting pressures, experiments are required that study how these pressures affect the structuring of natural communities. We performed experiments with naturally assembled invertebrate communities in 36 experimental ditches to assess the single and joint effects of environmentally relevant concentrations of two commonly co-occurring stressors: fertilizer inputs and neonicotinoid insecticides, in this case thiacloprid. Specifically, we explored whether these agrochemicals result in sustained changes in community structure by inspecting divergence, convergence and short- /long-lived dissimilarity of communities, when compared to a control treatment. Our results indicate strong impacts on the abundance of different taxa by exposure to the agrochemicals. However, we found no effect of any treatment on total abundance, taxon richness or convergence/divergence (measured as beta dispersion) of the communities. Moreover, we found contrasting responses when both joint stressors were present: when considering abundance of different taxa, we observed that fertilizer additions reduced some of the thiacloprid toxicity. But when assessing the community structure, we found that exposure to both stressors consistently resulted in a more dissimilar community compared to the control. This dissimilarity was persistent up to four months after applying the agrochemicals, even though there was a turnover in taxa explaining this dissimilarity. This turnover indicates that the persistent dissimilarity can potentially be attributed to a rippling effect in the community rather than continued toxicity. Such shifts in natural freshwater invertebrate communities, months after the actual exposure, suggests that stressors may have important long-term repercussions for which may subsequently lead to changes in ecosystem functioning.

Thiacloprid-induced toxicity influenced by nutrients: Evidence from in situ bioassays in experimental ditches.

Many studies show that neonicotinoid insecticides cause toxicity to aquatic invertebrates. Some studies report that insecticide toxicity may differ in combination with other agrochemicals under realistic field conditions. To explore such altered toxicity further, we aimed to determine the single and combined effects of environmentally relevant levels of the neonicotinoid thiacloprid and nutrients on different endpoints of 4 aquatic invertebrate species. Animals were exposed to these agrochemicals using a caged experiment within experimental ditches. We observed thiacloprid-induced toxicity for 2 crustaceans, Daphnia magna and Asellus aquaticus, and for 1 out of 2 tested insect species, Cloeon dipterum. We observed no toxic effects for Chironomus riparius at the time-weighted average test concentration of 0.51 µg thiacloprid/L. For D. magna, the observed toxicity, expressed as the lowest-observed-effect concentration (LOEC), on growth and reproduction was present at thiacloprid concentrations that were 2456-fold lower than laboratory-derived LOEC values. This shows that these species, when exposed under natural conditions, may exhibit neonicotinoid-induced toxic stress. Contrary to the low nutrient treatment, such toxicity was often not observed under nutrient-enriched conditions. This was likely attributable to the increased primary production that allowed for compensatory feeding. These findings warrant the inclusion of different feeding regimes in laboratory experiments to retrieve the best estimates of neonicotinoid-induced toxicity in the natural environment. Environ Toxicol Chem 2018;37:1907-1915. © 2018 SETAC.

Assessing combined impacts of agrochemicals: Aquatic macroinvertebrate population responses in outdoor mesocosms.

Agricultural ditches host a diverse community of species. These species often are unwarrantedly exposed to fertilizers and a wide-array of pesticides (hereafter: agrochemicals). Standardized ecotoxicological research provides valuable information to predict whether these pesticides possibly pose a threat to the organisms living within these ditches, in particular macro-invertebrates. However, knowledge on how mixtures of these agrochemicals affect macro-invertebrates under realistic abiotic conditions and with population and community complexity is mostly lacking. Therefore we examined here, using a full factorial design, the population responses of macroinvertebrate species assemblages exposed to environmentally relevant concentrations of three commonly used agrochemicals (for 35days) in an outdoor experiment. The agrochemicals selected were an insecticide (imidacloprid), herbicide (terbuthylazine) and nutrients (NPK), all having a widespread usage and often detected together in watersheds. Effects on species abundance and body length caused by binary mixture combinations could be described from single substance exposure. However, when agrochemicals were applied as tertiary mixtures, as they are commonly found in agricultural waters, species' abundance often deviated from expectations made based on the three single treatments. This indicates that pesticide-mixture induced toxicity to population relevant endpoints are difficult to extrapolate to field conditions. As in agricultural ditches often a multitude (approx. up to 7) of agrochemicals residues are detected, we call other scientist to verify the ecological complexity of non-additive induced shifts in natural aquatic invertebrate populations and aquatic species assemblages.

Effectiveness of a LED flashlight technique in reducing livestock depredation by lions (Panthera leo) around Nairobi National Park, Kenya.

The global lion (Panthera leo) population decline is partly a result of retaliatory killing in response to livestock depredation. Nairobi National Park (NNP) is a small protected area in Kenya surrounded by a human-dominated landscape. Communities around the park use flashlights to deter lions from their livestock bomas. We investigated the response by lions to the installation of a LED flashlight technique during 2007-2016.We interviewed 80 owners of livestock bomas with flashlights (n = 43) and without (n = 37) flashlights in the surroundings of NNP and verified reported attacks on bomas against predation data over10 years. The frequency of attacks on bomas equipped with flashlights was significantly lower compared to bomas without flashlights. We also found that after flashlight installation at livestock bomas, lion attacks took place further away from the park edge, towards areas where bomas without flashlights were still present. With increased numbers of flashlight installations at bomas in recent years, we further noticed a shift from nocturnal to more diurnal predation incidences. Our study shows that the LED flashlight technique is effective in reducing nocturnal livestock predation at bomas by lions. Long term studies on the effects as well as expansion of this technique into other communities around NNP are recommended.

Assessment of residential environmental exposure to pesticides from agricultural fields in the Netherlands.

We developed a spatio-temporal model for the Netherlands to estimate environmental exposure to individual agricultural pesticides at the residential address for application in a national case-control study on Parkinson's disease (PD). Data on agricultural land use and pesticide use were combined to estimate environmental exposure to pesticides for the period 1961 onwards. Distance categories of 0-50 m, >50-100 m, >100-500 m and >500-1000 m around residences were considered. For illustration purposes, exposure was estimated for the control population (n=607) in the PD case-control study. In a small validation effort, model estimates were compared with pesticide measurements in air and precipitation collected at 17 stations in 2000-2001. Estimated exposure prevalence was higher for pesticides used on commonly cultivated (rotating) crops than for pesticides used on fruit and bulbs only. Prevalence increased with increasing distance considered. Moderate-to-high correlations were observed between model estimates (>100-500 m and >500-1000 m) and environmental pesticide concentrations measured in 2000-2001. Environmental exposure to individual pesticides can be estimated using relevant spatial and temporal data sets on agricultural land use and pesticide use. Our approach seems to result in accurate estimates of average environmental exposure, although it remains to be investigated to what extent this reflect personal exposure to agricultural pesticides.

Environmental exposure to pesticides and the risk of Parkinson's disease in the Netherlands.

BACKGROUND: Exposure to pesticides has been linked to Parkinson's disease (PD), although associations between specific pesticides and PD have not been well studied. Residents of rural areas can be exposed through environmental drift and volatilization of agricultural pesticides. OBJECTIVES: Our aim was to investigate the association between lifetime environmental exposure to individual pesticides and the risk of PD, in a national case-control study. METHODS: Environmental exposure to pesticides was estimated using a spatio-temporal model, based on agricultural crops around the residential address. Distance up to 100m from the residence was considered most relevant, considering pesticide drift potential of application methods used in the Netherlands. Exposure estimates were generated for 157 pesticides, used during the study period, of which four (i.e. paraquat, maneb, lindane, benomyl) were considered a priori relevant for PD. RESULTS: A total of 352 PD cases and 607 hospital-based controls were included. No significant associations with PD were found for the a priori pesticides. In a hypothesis generating analysis, including 153 pesticides, increased risk of PD was found for 21 pesticides, mainly used on cereals and potatoes. Results were suggestive for an association between bulb cultivation and PD. CONCLUSIONS: For paraquat, risk estimates for the highest cumulative exposure tertile were in line with previously reported elevated risks. Increased risk of PD was observed for exposure to (a cluster of) pesticides used on rotating crops. High correlations limited our ability to identify individual pesticides responsible for this association. This study provides some evidence for an association between environmental exposure to specific pesticides and the risk of PD, and generates new leads for further epidemiological and mechanistic research.

The Impact of Landscape Complexity on Invertebrate Diversity in Edges and Fields in an Agricultural Area.

Invertebrate diversity is important for a multitude of ecosystem services and as a component of the larger ecological food web. A better understanding of the factors influencing invertebrate taxonomic richness and diversity at both local and landscape scales is important for conserving biodiversity within the agricultural landscape. The aim of this study was to determine if invertebrate richness and diversity in agricultural field interiors and edges in central Illinois, USA, were related to the complexity of the surrounding landscape. Our results show taxonomic richness and diversity in field edges is positively related to large scale landscape complexity, but the relationship is negative for field interiors. These unexpected results need further study.

Comparison of Asian Aquaculture Products by Use of Statistically Supported Life Cycle Assessment.

We investigated aquaculture production of Asian tiger shrimp, whiteleg shrimp, giant river prawn, tilapia, and pangasius catfish in Bangladesh, China, Thailand, and Vietnam by using life cycle assessments (LCAs), with the purpose of evaluating the comparative eco-efficiency of producing different aquatic food products. Our starting hypothesis was that different production systems are associated with significantly different environmental impacts, as the production of these aquatic species differs in intensity and management practices. In order to test this hypothesis, we estimated each system's global warming, eutrophication, and freshwater ecotoxicity impacts. The contribution to these impacts and the overall dispersions relative to results were propagated by Monte Carlo simulations and dependent sampling. Paired testing showed significant (p < 0.05) differences between the median impacts of most production systems in the intraspecies comparisons, even after a Bonferroni correction. For the full distributions instead of only the median, only for Asian tiger shrimp did more than 95% of the propagated Monte Carlo results favor certain farming systems. The major environmental hot-spots driving the differences in environmental performance among systems were fishmeal from mixed fisheries for global warming, pond runoff and sediment discards for eutrophication, and agricultural pesticides, metals, benzalkonium chloride, and other chlorine-releasing compounds for freshwater ecotoxicity. The Asian aquaculture industry should therefore strive toward farming systems relying upon pelleted species-specific feeds, where the fishmeal inclusion is limited and sourced sustainably. Also, excessive nutrients should be recycled in integrated organic agriculture together with efficient aeration solutions powered by renewable energy sources.

Autosomal and mtDNA Markers Affirm the Distinctiveness of Lions in West and Central Africa.

The evolutionary history of a species is key for understanding the taxonomy and for the design of effective management strategies for species conservation. The knowledge about the phylogenetic position of the lion (Panthera leo) in West/Central Africa is largely based on mitochondrial markers. Previous studies using mtDNA only have shown this region to hold a distinct evolutionary lineage. In addition, anthropogenic factors have led to a strong decline in West/Central African lion numbers, thus, the conservation value of these populations is particularly high. Here, we investigate whether autosomal markers are concordant with previously described phylogeographic patterns, and confirm the unique position of the West/Central African lion. Analysis of 20 microsatellites and 1,454 bp of the mitochondrial DNA in 16 lion populations representing the entire geographic range of the species found congruence in both types of markers, identifying four clusters: 1) West/Central Africa, 2) East Africa, 3) Southern Africa and 4) India. This is not in line with the current taxonomy, as defined by the IUCN, which only recognizes an African and an Asiatic subspecies. There are no indications that genetic diversity in West/Central Africa lions is lower than in either East or Southern Africa, however, given this genetic distinction and the recent declines of lion numbers in this region, we strongly recommend prioritization of conservation projects in West/Central Africa. As the current taxonomic nomenclature does not reflect the evolutionary history of the lion, we suggest that a taxonomic revision of the lion is warranted.

Assessing toxicity of copper nanoparticles across five cladoceran species.

As a result of ever increasing applications, nanoparticles will eventually end up in the environment. However, currently no common principle has been established to help understand the toxicity of nanoparticles (NPs) across species. Therefore, it is difficult to estimate the potential risks of nanoparticles to untested species in the environment. The authors exposed 4 different sizes of copper nanoparticles (CuNPs) and 1 submicron-sized copper particle to 5 cladoceran species (Daphnia magna, Daphnia pulex, Daphnia galeata, Ceriodaphnia dubia, and Chydorus sphaericus) to investigate whether morphological attributes of species can help to assess the acute toxicity of CuNPs across species. The results showed that rod-shaped CuNPs caused much lower toxicity to all species than spherical CuNPs. Both the particles and ions contributed to the total toxicity of the CuNP suspensions. Moreover, the toxicity caused by particles in 5 different copper suspensions increases with decreasing body length, surface area, and body volume of neonates of 5 cladoceran species. Especially the correlations between body volume of the 5 cladoceran species tested and the corresponding toxicity caused by 5 different CuNPs were statistically significant, and in all cases radj (2) was higher than 0.51 (p < 0.001). The highest correlation was found between body volume and the toxicity of the 78-nm CuNPs (radj (2) = 0.95, p < 0.001). To conclude, the correlations between attributes of cladoceran species and the toxicity of CuNPs reported in the present study evoke the possibility to assess and extrapolate the toxicity of nanoparticles across species with similar attributes.

Product carbon footprints and their uncertainties in comparative decision contexts.

In response to growing awareness of climate change, requests to establish product carbon footprints have been increasing. Product carbon footprints are life cycle assessments restricted to just one impact category, global warming. Product carbon footprint studies generate life cycle inventory results, listing the environmental emissions of greenhouse gases from a product's lifecycle, and characterize these by their global warming potentials, producing product carbon footprints that are commonly communicated as point values. In the present research we show that the uncertainties surrounding these point values necessitate more sophisticated ways of communicating product carbon footprints, using different sizes of catfish (Pangasius spp.) farms in Vietnam as a case study. As most product carbon footprint studies only have a comparative meaning, we used dependent sampling to produce relative results in order to increase the power for identifying environmentally superior products. We therefore argue that product carbon footprints, supported by quantitative uncertainty estimates, should be used to test hypotheses, rather than to provide point value estimates or plain confidence intervals of products' environmental performance.

Expert assessment of historical crop specific pesticide use in the Netherlands.

OBJECTIVES: Retrospective assessment of environmental pesticide exposure is challenging. Exposure measurements or information on crop-specific pesticide use are often lacking historically. We applied expert assessment to reconstruct historical pesticide use patterns in the Netherlands, and evaluated reliability and accuracy of this procedure. METHODS: For six main crops in the Netherlands, two experts per crop individually rated the probability (percentage of farmers applying) and frequency of use of authorised active ingredients between 1961 and 2005 per 5-year period. Inter-rater agreement was investigated by the percentage overall agreement and weighted Cohen's κ's (κ(w)). Experts' ratings were compared with self-reported pesticide use from recent farmer surveys to determine accuracy of the ratings. RESULTS: Inter-rater agreement on the probability of use varied between crops (κ(w) 0.25 to 0.69), as well as agreement on the frequency of use (κ(w) 0.32 to 0.64). Inter-rater agreement was marginally higher for herbicides and fungicides than insecticides. Comparisons with survey data indicated fair to good accuracy of the experts' ratings for the probability (κ(w) 0.48 to 0.65) and frequency of use (κ(w) 0.38 to 0.68). For all crops except fruit, the specificity of the experts' ratings was higher than the sensitivity. CONCLUSIONS: Overall inter-rater agreement between experts was fair to good and experts' ratings were reasonably accurate. Results of this study indicate that expert assessment can be used to derive information on historical pesticide use, which is essential for epidemiological studies evaluating the effect of (past) environmental exposure to pesticides on health.

Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa).

On the basis of morphological differences, three subspecies of Black-tailed Godwit (Limosa limosa) have been recognized (L. l. limosa, L. l. islandica and L. l. melanuroides). In previous studies mitochondrial DNA (mtDNA) sequence data showed minimal genetic divergence between the three subspecies and an absence of sub-structuring within L. l. limosa. Here, population genetic structure and phylogeographic patterns have been analyzed using COI, HVR1 and HVR2 mtDNA sequence data as well as 12 microsatellite loci (nuDNA). The nuDNA data suggest genetic differentiation between L. l. limosa from Sweden and The Netherlands, between L. l. limosa and L. l. islandica, but not between L. l. limosa and L. l. melanuroides. However, the mtDNA data were not consistent with the nuDNA pattern. mtDNA did support a split between L. l. melanuroides and L. l. limosa/L. l. islandica and also demonstrated two L. l. limosa haplotype clusters that were not geographically isolated. This genetic structure can be explained by a scenario of isolation of L. l. melanuroides from L. l. limosa in Beringia during the Last Glacial Maximum. During the Pleistocene separation of L. l. islandica from L. l. limosa occurred, followed by colonization of Iceland by the L. l. islandica during the Holocene. Within L. l. limosa founder events, followed by population expansion, took place during the Holocene also. According to the patterns observed in both markers together and their geographic separation, we propose that the three traditional subspecies indeed represent three separate genetic units.

Social structure of lions (Panthera leo) is affected by management in Pendjari Biosphere Reserve, Benin.

Lion populations have undergone a severe decline in West Africa. As baseline for conservation management, we assessed the group structure of lions in the Pendjari Biosphere Reserve in Benin. This reserve, composed of one National Park and two Hunting Zones, is part of the WAP transboundary complex of protected areas. Overall mean group size was 2.6±1.7 individuals (n = 296), it was significantly higher in the National Park (2.7±1.7, n = 168) than in the Hunting Zones (2.2±1.5, n = 128). Overall adult sex ratio was even, but significantly biased towards females (0.67) in the National Park and towards males (1.67) in the Hunting Zones. Our results suggest that the Pendjari lion population is affected by perturbations, such as trophy hunting.