Berry species and crop management approaches affect species diversity and abundance of predatory mites (Acari: Phytoseiidae).

Berries comprise an economically important group of crops. Knowledge about their arthropod pests and biological control agents is important in the development of more efficient integrated pest management programs. Identification of potential biocontrol agents based solely on morphological attributes may be difficult and so molecular techniques should be incorporated. Here we studied the species diversity of predatory mites in the family Phytoseiidae, and how this diversity is affected by the berry species and crop management approaches, specifically pesticide application regimes. We sampled 15 orchards in the State of Michoacán, Mexico. Sites were selected based on berry species and pesticide regimes. Mite identification was achieved by combining morphological attributes and molecular techniques. Phytoseiidae diversity was compared amongst blackberry, raspberry and blueberry. Subsequently we studied the effect of berry species and pesticide regime on the abundance of the most prevalent phytoseiid species. We identified 11 species of phytoseiid mites. The greatest species diversity was found in raspberry, followed by blackberry and then blueberry. The most abundant species were Typhlodromalus peregrinus and Neoseiulus californicus. The abundance of T. peregrinus was significantly affected by pesticide application but not by berry species. In contrast, abundance of N. californicus was significantly affected by berry species but not by pesticide regime.

Endoparasitic diversity from the Southern Ocean: is it really low in Antarctic fish?

The biodiversity and composition of endoparasites in fish obtained from the Antarctic and subantarctic zones are compared in this study. Several fish were collected in the summer from Antarctica (King George Island) and the Southern Pacific coast (Strait of Magellan and Almirante Montt Gulf). This database was complemented with published information on fish endoparasite communities from both zones, with specimens of fish sample size n ≥ 15. Thus, 31 fish species were analysed in this study, which altogether had 79 parasite species. Diversity indices were calculated for the parasite community of each fish species. Then they were compared between the Antarctic and subantarctic zones. Parasite species composition and host specificity (as the number of fish species used by a parasite species) were also analysed and compared between zones. The diversity indices and the abundance of parasites were significantly higher in the Antarctic than the subantarctic fish. Few parasite species (7.6%) were shared between fish from both zones, showing significant differences in parasite composition. Antarctic parasites were less host-specific than subantarctic parasites, which allowed the coexistence of several parasite species in the fish. The high parasite abundance in Antarctic fish could trigger sympatric speciation in certain parasitic lineages or the exploitation of new resources, resulting in more parasite species than those in subantarctic environments. The high abundance of Antarctic parasites implies different methods and rates of transmission than those of subantarctic parasites. In addition, more alternative fish hosts were used by the Antarctic than subantarctic parasites. This altogether indicates that host-parasite interaction dynamics significantly differ between the Antarctic and subantarctic systems.

Modeling tree diversity, stand structure and productivity of northern temperate coniferous forests of Mexico.

There is increasing evidence complex forest structure and tree diversity correlates positively with the productivity of forest ecosystems. However, there is little quantitative information regarding the effect of these factors on stand productivity of northern temperate coniferous forests of Mexico. This study aimed to test the hypothesis tree diversity and canopy structure positively associates with forest productivity. Parameterization of tree diversity, stand structure and productivity were carried out on dasometric data from 36 permanent sampling plots re-measured in 1982, 1993, and 2004. Statistical analysis of stand parameters tested the null hypothesis. Statistical relationships revealed well-balanced canopy strata and imbalanced diameter structures positively correlated with stand productivity. Tree diversity was also positively linked with stand productivity, but the effect appeared to be most important in the early to intermediate stages of succession. Further research is required to understand the long-term effects of tree diversity and canopy structure on stand productivity. These preliminary observations stress the importance of prescribing silvicultural practices that maintain the three-dimensional structure of stands and diversity of forest canopies that aim to preserve ecosystem function, diversity, and productivity.

Benthic macroinvertebrate community in the Sinos river drainage basin, Rio Grande do Sul, Brazil / A comunidade de macroinvertebrados bentônicos da bacia hidrográfica do rio dos Sinos, Rio Grande do Sul, Brasil

Aquatic macroinvertebrate fauna is a relevant component of limnic continental aquatic ecosystems, playing an important role in several processes with relevant biocomplexity. The present study characterized the benthic macroinvertebrate fauna found in three hydric bodies in the Sinos river drainage basin regarding community structure. Sample was collected from January to December 2013 in three locations in the basin: the city of Caraá (29 °4545.5S/50°1937.3W), the city of Rolante (29°3834.4S/50°3233.2W) and the city of Igrejinha (29°3610.84S/50°4849.3W). Abiotic components (pH, dissolved oxygen and temperature) were registered and collected samples were identified up to family type. Average annual pH, dissolved oxygen and temperature were similar in all locations. A total of 26,170 samples were collected. Class Insecta (Arthropods) represented 85.5% of total sample. Platyhelmintes, Mollusca and Annelida samples were also registered. A total of 57 families were identified for the drainage basin and estimators (Chao-1, Chao-2 and jackknife 2) estimated richness varying from 60 to 72 families.(AU)

A fauna de macroinvertebrados aquáticos é um relevante componente dos ecossistemas aquáticos límnicos continentais, atuando em vários processos de importante biocomplexidade. O presente estudo caracterizou a fauna de macroinvertebrados bentônicos em três corpos hídricos da Bacia Hidrográfica do Rio dos Sinos, em relação a estrutura da comunidade. Amostragens foram realizadas de janeiro a dezembro de 2013 em três locais na bacia: Município de Caraá (29°4545,5S/50°1937,3W), Município de Rolante(29°3834,4S/50°3233,2W) e Município de Igrejinha(29°3610,84S/50°4849,3W). Variáveis abióticas (pH, oxigênio dissolvido e temperatura) foram registradas e os exemplares coletados identificados até família. As médias anuais de pH, oxigênio dissolvido e temperatura foram similares em todos os pontos. Um total de 26.170 exemplares foi amostrado. A Classe Insecta (Arthropoda) representou 85,5% do total. Platyhelmintes, Mollusca e Annelida também foram registrados. Foram determinadas 57 famílias para a bacia hidrográfica e os estimadores (Chao-1, Chao-2 e jackknife 2) projetaram uma riqueza variando de 60 a 72.(AU)

Benthic macroinvertebrate community in the Sinos river drainage basin, Rio Grande do Sul, Brazil / A comunidade de macroinvertebrados bentônicos da bacia hidrográfica do rio dos Sinos, Rio Grande do Sul, Brasil

Abstract Aquatic macroinvertebrate fauna is a relevant component of limnic continental aquatic ecosystems, playing an important role in several processes with relevant biocomplexity. The present study characterized the benthic macroinvertebrate fauna found in three hydric bodies in the Sinos river drainage basin regarding community structure. Sample was collected from January to December 2013 in three locations in the basin: the city of Caraá (29 °45’45.5”S/50°19’37.3”W), the city of Rolante (29°38’34.4”S/50°32’33.2”W) and the city of Igrejinha (29°36’10.84”S/50°48’49.3”W). Abiotic components (pH, dissolved oxygen and temperature) were registered and collected samples were identified up to family type. Average annual pH, dissolved oxygen and temperature were similar in all locations. A total of 26,170 samples were collected. Class Insecta (Arthropods) represented 85.5% of total sample. Platyhelmintes, Mollusca and Annelida samples were also registered. A total of 57 families were identified for the drainage basin and estimators (Chao-1, Chao-2 and jackknife 2) estimated richness varying from 60 to 72 families.

Resumo A fauna de macroinvertebrados aquáticos é um relevante componente dos ecossistemas aquáticos límnicos continentais, atuando em vários processos de importante biocomplexidade. O presente estudo caracterizou a fauna de macroinvertebrados bentônicos em três corpos hídricos da Bacia Hidrográfica do Rio dos Sinos, em relação a estrutura da comunidade. Amostragens foram realizadas de janeiro a dezembro de 2013 em três locais na bacia: Município de Caraá (29°45’45,5”S/50°19’37,3”W), Município de Rolante(29°38’34,4”S/50°32’33,2”W) e Município de Igrejinha(29°36’10,84”S/50°48’49,3”W). Variáveis abióticas (pH, oxigênio dissolvido e temperatura) foram registradas e os exemplares coletados identificados até família. As médias anuais de pH, oxigênio dissolvido e temperatura foram similares em todos os pontos. Um total de 26.170 exemplares foi amostrado. A Classe Insecta (Arthropoda) representou 85,5% do total. Platyhelmintes, Mollusca e Annelida também foram registrados. Foram determinadas 57 famílias para a bacia hidrográfica e os estimadores (Chao-1, Chao-2 e jackknife 2) projetaram uma riqueza variando de 60 a 72.

Suficiência amostral para estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em arrozais irrigados / Sample sufficiency for environmental impact studies on benthic macroinvertebrate community in irrigated rice fields

RESUMO: O objetivo deste estudo foi determinar a suficiência amostral para estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em arrozais irrigados (Oryza sativa L.). Amostragens de solo foram realizadas com auxílio de coletor cilíndrico, nos anos agrícolas 2007/08 e 2012/13. As amostras foram triadas e os espécimes identificados até o nível de família. Os dados foram submetidos à análise da curva do coletor e os índices de diversidade de Shannon e equabilidade de Pielou foram calculados para o total de amostras e o número de amostras definido pela curva do coletor, em cada ano amostral. Considerando o método de amostragem verificado no presente trabalho, indica-se um mínimo de 12 réplicas para se obter o maior número de famílias sem perda de informação, quando em estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em área de cultivo de arroz irrigado.

ABSTRACT: The objective of this study was to determine the sample sufficiency in environmental impact studies on the benthic macroinvertebrate community in irrigated rice fields (Oryza sativa L.). Soil samplings were conducted with a cylindrical collector in the agricultural years of 2007/08 and 2012/13. Individuals were sorted out and identified up to family level. Data were analyzed through the collector curve, Shannon's Diversity and Pielou's Evenness Index were calculated for the total number of samples and the number of samples defined by the collector curve in each year. Considering the results observed in this study, we indicate a minimum of 12 replicates to obtain the largest number of families without loss of information, in environmental impact studies on benthic macroinvertebrate community in irrigated rice fields.

Suficiência amostral para estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em arrozais irrigados

ABSTRACT: The objective of this study was to determine the sample sufficiency in environmental impact studies on the benthic macroinvertebrate community in irrigated rice fields (Oryza sativa L.). Soil samplings were conducted with a cylindrical collector in the agricultural years of 2007/08 and 2012/13. Individuals were sorted out and identified up to family level. Data were analyzed through the collector curve, Shannon's Diversity and Pielou's Evenness Index were calculated for the total number of samples and the number of samples defined by the collector curve in each year. Considering the results observed in this study, we indicate a minimum of 12 replicates to obtain the largest number of families without loss of information, in environmental impact studies on benthic macroinvertebrate community in irrigated rice fields.

RESUMO: O objetivo deste estudo foi determinar a suficiência amostral para estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em arrozais irrigados (Oryza sativa L.). Amostragens de solo foram realizadas com auxílio de coletor cilíndrico, nos anos agrícolas 2007/08 e 2012/13. As amostras foram triadas e os espécimes identificados até o nível de família. Os dados foram submetidos à análise da curva do coletor e os índices de diversidade de Shannon e equabilidade de Pielou foram calculados para o total de amostras e o número de amostras definido pela curva do coletor, em cada ano amostral. Considerando o método de amostragem verificado no presente trabalho, indica-se um mínimo de 12 réplicas para se obter o maior número de famílias sem perda de informação, quando em estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em área de cultivo de arroz irrigado.

Sample sufficiency for environmental impact studies on benthic macroinvertebrate community in irrigated rice fields / Suficiência amostral para estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em arrozais irrigados

The objective of this study was to determine the sample sufficiency in environmental impact studies on the benthic macroinvertebrate community in irrigated rice fields (Oryza sativa L.). Soil samplings were conducted with a cylindrical collector in the agricultural years of 2007/08 and 2012/13. Individuals were sorted out and identified up to family level. Data were analyzed through the collector curve, Shannon"s Diversity and Pielou"s Evenness Index were calculated for the total number of samples and the number of samples defined by the collector curve in each year. Considering the results observed in this study, we indicate a minimum of 12 replicates to obtain the largest number of families without loss of information, in environmental impact studies on benthic macroinvertebrate community in irrigated rice fields.(AU)

O objetivo deste estudo foi determinar a suficiência amostral para estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em arrozais irrigados (Oryza sativa L.). Amostragens de solo foram realizadas com auxílio de coletor cilíndrico, nos anos agrícolas 2007/08 e 2012/13. As amostras foram triadas e os espécimes identificados até o nível de família. Os dados foram submetidos à análise da curva do coletor e os índices de diversidade de Shannon e equabilidade de Pielou foram calculados para o total de amostras e o número de amostras definido pela curva do coletor, em cada ano amostral. Considerando o método de amostragem verificado no presente trabalho, indica-se um mínimo de 12 réplicas para se obter o maior número de famílias sem perda de informação, quando em estudos de impacto ambiental sobre a comunidade de macroinvertebrados bentônicos em área de cultivo de arroz irrigado.(AU)

Occurrence of culturable soil fungi in a tropical moist deciduous forest Similipal Biosphere Reserve, Odisha, India.

Similipal Biosphere Reserve (SBR) is a tropical moist deciduous forest dominated by the species Shorea robusta . To the best of our knowledge their rich biodiversity has not been explored in term of its microbial wealth. In the present investigation, soil samples were collected from ten selected sites inside SBR and studied for their physicochemical parameters and culturable soil fungal diversity. The soil samples were found to be acidic in nature with a pH ranging from of 5.1-6.0. Highest percentage of organic carbon and moisture content were observed in the samples collected from the sites, Chahala-1 and Chahala-2. The plate count revealed that fungal population ranged from 3.6 × 10 (4) -2.1 × 10 (5) and 5.1 × 10 (4) -4.7 × 10 (5) cfu/gm of soil in summer and winter seasons respectively. The soil fungus, Aspergillus niger was found to be the most dominant species and Species Important Values Index (SIVI) was 43.4 and 28.6 in summer and winter seasons respectively. Among the sites studied, highest fungal diversity indices were observed during summer in the sites, Natto-2 and Natto-1. The Shannon-Wiener and Simpson indices in these two sites were found to be 3.12 and 3.022 and 0.9425 and 0.9373 respectively. However, the highest Fisher's alpha was observed during winter in the sites Joranda, Natto-2, Chahala-1 and Natto-1 and the values were 3.780, 3.683, 3.575 and 3.418 respectively. Our investigation revealed that, fungal population was dependent on moisture and organic carbon (%) of the soil but its diversity was found to be regulated by sporulating species like Aspergillus and Penicillium.

Occurrence of culturable soil fungi in a tropical moist deciduous forest Similipal Biosphere Reserve, Odisha, India

Similipal Biosphere Reserve (SBR) is a tropical moist deciduous forest dominated by the species Shorea robusta. To the best of our knowledge their rich biodiversity has not been explored in term of its microbial wealth. In the present investigation, soil samples were collected from ten selected sites inside SBR and studied for their physicochemical parameters and culturable soil fungal diversity. The soil samples were found to be acidic in nature with a pH ranging from of 5.1–6.0. Highest percentage of organic carbon and moisture content were observed in the samples collected from the sites, Chahala-1 and Chahala-2. The plate count revealed that fungal population ranged from 3.6 × 104–2.1 × 105 and 5.1 × 104–4.7 × 105 cfu/gm of soil in summer and winter seasons respectively. The soil fungus, Aspergillus niger was found to be the most dominant species and Species Important Values Index (SIVI) was 43.4 and 28.6 in summer and winter seasons respectively. Among the sites studied, highest fungal diversity indices were observed during summer in the sites, Natto-2 and Natto-1. The Shannon-Wiener and Simpson indices in these two sites were found to be 3.12 and 3.022 and 0.9425 and 0.9373 respectively. However, the highest Fisher’s alpha was observed during winter in the sites Joranda, Natto-2, Chahala-1 and Natto-1 and the values were 3.780, 3.683, 3.575 and 3.418 respectively. Our investigation revealed that, fungal population was dependent on moisture and organic carbon (%) of the soil but its diversity was found to be regulated by sporulating species like Aspergillus and Penicillium.

Does climate influence spatial variation of tree species alpha diversity in the Brazilian Atlantic rainforest? / O clima influencia a variação espacial da diversidade alfa de espécies arbóreas na floresta pluvial Atlântica do Brasil?

We tested the hypothesis that the variation in tree species alpha diversity is driven by climate in the Brazilian Atlantic Rainforest (ARF). Considering 139 samples of trees with DBH ≥ 4.8 cm, we correlated alpha diversity measures (Shannon heterogeneity index H', Chao I richness estimator, and Simpson concentration index C) with climate variables (perhumidity index, mean annual rainfall, and mean annual temperature) and spatial variables (latitude, longitude, and altitude). Using CCA, multiple regression analysis and RDA procedures, we found a positive relationship between latitude, longitude, and altitude with Shannon's diversity index and Chao I richness estimator, and a negative relationship with Simpson concentration index. Over 75% of the variation remained unexplained and were attributed to stochastic processes. These results indicate that climate has a very weak influence on tree species alpha diversity, which is more influenced by spatial variation in the ARF. We propose that the current tree species alpha diversity could be a result of the history of the ARF during the Cenozoic, when geological events and climate oscillations could have triggered biogeographic processes, such as alternating episodes of vicariance and dispersal, which would have lead to the great diversity of species and heterogeneity across the geographic space observed today.

Investigamos a hipótese de que a variação da diversidade alfa de espécies de árvores é determinada pelo clima na Floresta Pluvial Atlântica brasileira (FPA). Considerando 139 amostras de árvores com DAP ≥ 4,8 cm, correlacionamos medidas de diversidade alfa (heterogeneidade de Shannon H', riqueza Chao I e concentração de Simpson C) com variáveis climáticas (índice de perumidade, precipitação total média anual e temperatura anual média) e variáveis espaciais (latitude, longitude e altitude). Aplicando CCA, análise de regressão múltipla e RDA, encontramos correlação positiva da latitude, longitude e altitude com H' e Chao I e uma correlação negativa com a concentração de Simpson. Mais de 75% das variações permaneceram inexplicadas e foram atribuídas a processos estocásticos. Esses resultados indicam que o clima tem uma fraca influência sobre a diversidade alfa de espécies arbóreas, a qual é mais influenciada pela variação do espaço na FPA. Propomos que a atual diversidade de espécies de árvores poderia ser um resultado da história da FPA durante o Cenozoico, quando eventos geológicos e oscilações climáticas poderiam ter desencadeado processos biogeográficos como episódios alternados de vicariância e dispersão, os quais poderiam ter levado à grande diversificação de espécies e sua heterogeneidade no espaço geográfico que se observa atualmente.

Does climate influence spatial variation of tree species alpha diversity in the Brazilian Atlantic rainforest? / O clima influencia a variação espacial da diversidade alfa de espécies arbóreas na floresta pluvial Atlântica do Brasil?

We tested the hypothesis that the variation in tree species alpha diversity is driven by climate in the Brazilian Atlantic Rainforest (ARF). Considering 139 samples of trees with DBH 4.8 cm, we correlated alpha diversity measures (Shannon heterogeneity index H", Chao I richness estimator, and Simpson concentration index C) with climate variables (perhumidity index, mean annual rainfall, and mean annual temperature) and spatial variables (latitude, longitude, and altitude). Using CCA, multiple regression analysis and RDA procedures, we found a positive relationship between latitude, longitude, and altitude with Shannons diversity index and Chao I richness estimator, and a negative relationship with Simpson concentration index. Over 75% of the variation remained unexplained and were attributed to stochastic processes. These results indicate that climate has a very weak influence on tree species alpha diversity, which is more influenced by spatial variation in the ARF. We propose that the current tree species alpha diversity could be a result of the history of the ARF during the Cenozoic, when geological events and climate oscillations could have triggered biogeographic processes, such as alternating episodes of vicariance and dispersal, which would have lead to the great diversity of species and heterogeneity across the geographic space observed today.(AU)

Investigamos a hipótese de que a variação da diversidade alfa de espécies de árvores é determinada pelo clima na Floresta Pluvial Atlântica brasileira (FPA). Considerando 139 amostras de árvores com DAP 4,8 cm, correlacionamos medidas de diversidade alfa (heterogeneidade de Shannon H, riqueza Chao I e concentração de Simpson C) com variáveis climáticas (índice de perumidade, precipitação total média anual e temperatura anual média) e variáveis espaciais (latitude, longitude e altitude). Aplicando CCA, análise de regressão múltipla e RDA, encontramos correlação positiva da latitude, longitude e altitude com H e Chao I e uma correlação negativa com a concentração de Simpson. Mais de 75% das variações permaneceram inexplicadas e foram atribuídas a processos estocásticos. Esses resultados indicam que o clima tem uma fraca influência sobre a diversidade alfa de espécies arbóreas, a qual é mais influenciada pela variação do espaço na FPA. Propomos que a atual diversidade de espécies de árvores poderia ser um resultado da história da FPA durante o Cenozoico, quando eventos geológicos e oscilações climáticas poderiam ter desencadeado processos biogeográficos como episódios alternados de vicariância e dispersão, os quais poderiam ter levado à grande diversificação de espécies e sua heterogeneidade no espaço geográfico que se observa atualmente.(AU)

The taxonomic distinctness of macroinvertebrate communities of Atlantic Forest streams cannot be predicted by landscape and climate variables, but traditional biodiversity indices can / A distinção taxonômica de comunidades de macroinvertebrados de córregos da Mata Atlântica não pode ser previsto pela paisagem e por variáveis climáticas, mas os índices de biodiversidade tradicional podem

Predicting how anthropogenic activities may influence the various components of biodiversity is essential for finding ways to reduce diversity loss. This challenge involves: a) understanding how environmental factors influence diversity across different spatial scales, and b) developing ways to measure these relationships in a way that is fast, economical, and easy to communicate. In this study, we investigate whether landscape and bioclimatic variables could explain variation in biodiversity indices in macroinvertebrate communities from 39 Atlantic Forest streams. In addition to traditional diversity measures, i.e., species richness, abundance and Shannon index, we used a taxonomic distinctness index that measures the degree of phylogenetic relationship among taxa. The amount of variation in the diversity measures that was explained by environmental and spatial variables was estimated using variation partitioning based on multiple regression. Our study demonstrates that taxonomic distinctness does not respond in the same way as the traditional used in biodiversity studies. We found no evidence that taxonomic distinctness responds predictably to variation in landscape metrics, indicating the need for the incorporation of predictors at multiple scales in this type of study. The lack of congruence between taxonomic distinctness and other indices and its low predictability may be related to the fact that this measure expresses long-term evolutionary adaptation to ecosystem conditions, while the other traditional biodiversity metrics respond to short-term environmental changes.(AU)

Prever como as atividades antrópicas podem influenciar os vários componentes da biodiversidade é essencial para encontrar maneiras de reduzir a perda de diversidade. Este desafio envolve: a) a compreensão de como os fatores ambientais influenciam a diversidade em diferentes escalas espaciais e, b) desenvolver formas de medir essas relações de uma maneira rápida, econômica e de fácil comunicação. Neste estudo, nós investigamos se a paisagem e as variáveis bioclimáticas podem explicar a variação nos índices de biodiversidade em comunidades de macroinvertebrados de 39 riachos de Mata Atlântica. Adicionalmente às medidas tradicionais de diversidade, por ex.: riqueza de espécies, abundância e índice de Shannon, nos utilizamos índice de distinção taxonômica que mede o grau de relação filogenética dentre os taxa. A quantidade de variação nas medidas de diversidade que foi explicado por variáveis ambientais e espaciais foi estimada utilizando a variação particionada baseada em regressão múltipla. O presente estudo demonstra que o índice de distinção taxonômica não responde da mesma maneira que os índices tradicionais utilizados em estudos de biodiversidade. Nós não encontramos nenhuma evidência de que a distinção taxonômica responde previsivelmente à variação métricas da paisagem, indicando a necessidade de incorporação de preditores em múltiplas escalas neste tipo de estudo. A falta de congruência entre a distinção taxonômica e outros índices e sua baixa previsibilidade pode estar relacionada com o fato de esta medida expressar adaptações evolutivas de longo prazo para as condições ambientais, enquanto as outras métricas tradicionais respondem às alterações ambientais de curto prazo.(AU)

The taxonomic distinctness of macroinvertebrate communities of Atlantic Forest streams cannot be predicted by landscape and climate variables, but traditional biodiversity indices can / A distinção taxonômica de comunidades de macroinvertebrados de córregos da Mata Atlântica não pode ser previsto pela paisagem e por variáveis climáticas, mas os índices de biodiversidade tradicional podem

Predicting how anthropogenic activities may influence the various components of biodiversity is essential for finding ways to reduce diversity loss. This challenge involves: a) understanding how environmental factors influence diversity across different spatial scales, and b) developing ways to measure these relationships in a way that is fast, economical, and easy to communicate. In this study, we investigate whether landscape and bioclimatic variables could explain variation in biodiversity indices in macroinvertebrate communities from 39 Atlantic Forest streams. In addition to traditional diversity measures, i.e., species richness, abundance and Shannon index, we used a taxonomic distinctness index that measures the degree of phylogenetic relationship among taxa. The amount of variation in the diversity measures that was explained by environmental and spatial variables was estimated using variation partitioning based on multiple regression. Our study demonstrates that taxonomic distinctness does not respond in the same way as the traditional used in biodiversity studies. We found no evidence that taxonomic distinctness responds predictably to variation in landscape metrics, indicating the need for the incorporation of predictors at multiple scales in this type of study. The lack of congruence between taxonomic distinctness and other indices and its low predictability may be related to the fact that this measure expresses long-term evolutionary adaptation to ecosystem conditions, while the other traditional biodiversity metrics respond to short-term environmental changes.

Prever como as atividades antrópicas podem influenciar os vários componentes da biodiversidade é essencial para encontrar maneiras de reduzir a perda de diversidade. Este desafio envolve: a) a compreensão de como os fatores ambientais influenciam a diversidade em diferentes escalas espaciais e, b) desenvolver formas de medir essas relações de uma maneira rápida, econômica e de fácil comunicação. Neste estudo, nós investigamos se a paisagem e as variáveis bioclimáticas podem explicar a variação nos índices de biodiversidade em comunidades de macroinvertebrados de 39 riachos de Mata Atlântica. Adicionalmente às medidas tradicionais de diversidade, por ex.: riqueza de espécies, abundância e índice de Shannon, nos utilizamos índice de distinção taxonômica que mede o grau de relação filogenética dentre os taxa. A quantidade de variação nas medidas de diversidade que foi explicado por variáveis ambientais e espaciais foi estimada utilizando a variação particionada baseada em regressão múltipla. O presente estudo demonstra que o índice de distinção taxonômica não responde da mesma maneira que os índices tradicionais utilizados em estudos de biodiversidade. Nós não encontramos nenhuma evidência de que a distinção taxonômica responde previsivelmente à variação métricas da paisagem, indicando a necessidade de incorporação de preditores em múltiplas escalas neste tipo de estudo. A falta de congruência entre a distinção taxonômica e outros índices e sua baixa previsibilidade pode estar relacionada com o fato de esta medida expressar adaptações evolutivas de longo prazo para as condições ambientais, enquanto as outras métricas tradicionais respondem às alterações ambientais de curto prazo.

Long-term changes in the fish assemblage of a neotropical hydroelectric reservoir.

The changes in the fish assemblage of the Capivara Reservoir, Brazil, were assessed over a 20 year period. Of 50 native fishes present in the initial samples, 27 were no longer present in the final samples, but there had been an addition of 11 invasive fishes, suggesting the occurrence of substantial shifts in fish diversity and abundance.

Cultivable bacterial diversity along the altitudinal zonation and vegetation range of tropical Eastern Himalaya

The Northeastern part of India sprawls over an area of 262 379km² in the Eastern Himalayan range. This constitutes a biodiversity hotspot with high levels of biodiversity and endemism; unfortunately, is also a poorly known area, especially on its microbial diversity. In this study, we assessed cultivable soil bacterial diversity and distribution from lowlands to highlands (34 to 3 990m.a.s.l.). Soil physico-chemical parameters and forest types across the different altitudes were characterized and correlated with bacterial distribution and diversity. Microbes from the soil samples were grown in Nutrient, Muller Hinton and Luria-Bertani agar plates and were initially characterized using biochemical methods. Parameters like dehydrogenase and urease activities, temperature, moisture content, pH, carbon content, bulk density of the sampled soil were measured for each site. Representative isolates were also subjected to 16S rDNA sequence analysis. A total of 155 cultivable bacterial isolates were characterized which were analyzed for richness, evenness and diversity indices. The tropical and sub-tropical forests supported higher bacterial diversity compared to temperate pine, temperate conifer, and sub-alpine rhododendron forests. The 16S rRNA phylogenetic analysis revealed that Firmicutes was the most common group followed by Proteobacteria and Bacteroidetes. Species belonging to the genera Bacillus and Pseudomonas were the most abundant. Bacterial CFU showed positive but insignificant correlation with soil parameters like pH (r=0.208), soil temperature (r=0.303), ambient temperature (r=0.443), soil carbon content (r=0.525), soil bulk density (r=0.268), soil urease (r=0.549) and soil dehydrogenase (r=0.492). Altitude (r=0.561) and soil moisture content (r=-0.051) showed negative correlation. Altitudinal gradient along with the vegetation and soil physico-chemical parameters were found to influence bacterial diversity and distribution. This study points out that this is a biome with a vast reservoir of bacteria which decrease with increasing altitudes, and highlights the microbiological importance of the poorly studied Eastern Himalayan range, justifying efforts to explore the prevalence of novel species in the biome.

La parte noreste de la India se extiende sobre una superficie de 262 379km² en la cordillera oriental del Himalaya. Es un punto de acceso con altos niveles de biodiversidad y endemismo; desafortunadamente, también es una zona poco conocida, sobre todo su diversidad microbiana. En este estudio se evaluó la diversidad de bacterias cultivables del suelo, su diversidad y distribución de las tierras bajas a las altas (34 a 3 990m.s.n.m). Se caracterizaron los parámetros físico-químicos del suelo y tipos de bosques a lo largo del gradiente altitudinal y se correlacionaron con la distribución y diversidad bacteriana. Los microbios del suelo se cultivaron en placas de agar enriquecido Muller Hinton y Luria-Bertani, e inicialmente se caracterizaron mediante métodos bioquímicos. Parámetros tales como actividad de la deshidrogenasa y ureasa, temperatura, contenido de humedad y de carbono, pH y densidad aparente del suelo se midieron en cada sitio. Aislamientos representativos también se sometieron al análisis secuencial de 16S rADN. Un total de 155 aislamientos bacterianos cultivables se caracterizaron para estimar los índices de riqueza, equidad y diversidad. Los bosques tropicales y subtropicales albergan una mayor diversidad bacteriana en comparación con los bosques templados de pino y coníferas, y los bosques subalpinos de rododendro. El análisis filogenético de 16S rARN reveló que Firmicutes fue el grupo más común, seguido de Proteobacteria y Bacteroidetes. Especies pertenecientes a los géneros Bacillus y Pseudomonas fueron las más abundantes. Las UFC bacterianas mostraron una positiva pero insignificante correlación con los parámetros del suelo, tales como pH (r=0.208), temperatura (r=0.303), temperatura ambiente (r=0.443), contenido de carbón (r=0.525), densidad aparente (r=0.268), ureasa (r=0.549) y deshidrogenasa (r=0.492). La altitud (r=-0.561) y el contenido de humedad del suelo (r=-0.051) mostraron una correlación negativa. Se encontró que el gradiente altitudinal, junto con la vegetación y los parámetros físico-químicos influyeron en la diversidad bacteriana y la distribución. Este estudio señala que este es un bioma con un vasto reservorio de bacterias que disminuyen con la altitud y pone en relieve la importancia microbiológica de la pobremente estudiada zona del este del Himalaya, lo que justifica los esfuerzos para explorar la prevalencia de nuevas especies en el bioma.

Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris)

The common bean is one of the most important legumes in the human diet, but little is known about the endophytic bacteria associated with the leaves of this plant. The objective of this study was to characterize the culturable endophytic bacteria of common bean (Phaseolus vulgaris. leaves from three different cultivars (Vermelhinho, Talismã, and Ouro Negro) grown under the same field conditions. The density of endophytic populations varied from 4.5 x 10² to 2.8 x 10³ CFU g-1 of fresh weight. Of the 158 total isolates, 36.7% belonged to the Proteobacteria, 32.9% to Firmicutes, 29.7% to Actinobacteria, and 0.6% to Bacteroidetes. The three P. vulgaris cultivars showed class distribution differences among Actinobacteria, Alphaproteobacteria and Bacilli. Based on 16S rDNA sequences, 23 different genera were isolated comprising bacteria commonly associated with soil and plants. The genera Bacillus, Delftia, Methylobacterium, Microbacterium, Paenibacillus, Staphylococcus and Stenotrophomonas were isolated from all three cultivars. To access and compare the community structure, diversity indices were calculated. The isolates from the Talismã cultivar were less diverse than the isolates derived from the other two cultivars. The results of this work indicate that the cultivar of the plant may contribute to the structure of the endophytic community associated with the common bean. This is the first report of endophytic bacteria from the leaves of P. vulgaris cultivars. Future studies will determine the potential application of these isolates in biological control, growth promotion and enzyme production for biotechnology.(AU)

Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris)

The common bean is one of the most important legumes in the human diet, but little is known about the endophytic bacteria associated with the leaves of this plant. The objective of this study was to characterize the culturable endophytic bacteria of common bean (Phaseolus vulgaris. leaves from three different cultivars (Vermelhinho, Talismã, and Ouro Negro) grown under the same field conditions. The density of endophytic populations varied from 4.5 x 10² to 2.8 x 10³ CFU g-1 of fresh weight. Of the 158 total isolates, 36.7% belonged to the Proteobacteria, 32.9% to Firmicutes, 29.7% to Actinobacteria, and 0.6% to Bacteroidetes. The three P. vulgaris cultivars showed class distribution differences among Actinobacteria, Alphaproteobacteria and Bacilli. Based on 16S rDNA sequences, 23 different genera were isolated comprising bacteria commonly associated with soil and plants. The genera Bacillus, Delftia, Methylobacterium, Microbacterium, Paenibacillus, Staphylococcus and Stenotrophomonas were isolated from all three cultivars. To access and compare the community structure, diversity indices were calculated. The isolates from the Talismã cultivar were less diverse than the isolates derived from the other two cultivars. The results of this work indicate that the cultivar of the plant may contribute to the structure of the endophytic community associated with the common bean. This is the first report of endophytic bacteria from the leaves of P. vulgaris cultivars. Future studies will determine the potential application of these isolates in biological control, growth promotion and enzyme production for biotechnology.

Isolation and characterization of endophytic bacteria isolated from the leaves of the common bean (Phaseolus vulgaris).

The common bean is one of the most important legumes in the human diet, but little is known about the endophytic bacteria associated with the leaves of this plant. The objective of this study was to characterize the culturable endophytic bacteria of common bean (Phaseolus vulgaris) leaves from three different cultivars (Vermelhinho, Talismã, and Ouro Negro) grown under the same field conditions. The density of endophytic populations varied from 4.5 x 10(2) to 2.8 x 10(3) CFU g(-1) of fresh weight. Of the 158 total isolates, 36.7% belonged to the Proteobacteria, 32.9% to Firmicutes, 29.7% to Actinobacteria, and 0.6% to Bacteroidetes. The three P. vulgaris cultivars showed class distribution differences among Actinobacteria, Alphaproteobacteria and Bacilli. Based on 16S rDNA sequences, 23 different genera were isolated comprising bacteria commonly associated with soil and plants. The genera Bacillus, Delftia, Methylobacterium, Microbacterium, Paenibacillus, Staphylococcus and Stenotrophomonas were isolated from all three cultivars. To access and compare the community structure, diversity indices were calculated. The isolates from the Talismã cultivar were less diverse than the isolates derived from the other two cultivars. The results of this work indicate that the cultivar of the plant may contribute to the structure of the endophytic community associated with the common bean. This is the first report of endophytic bacteria from the leaves of P. vulgaris cultivars. Future studies will determine the potential application of these isolates in biological control, growth promotion and enzyme production for biotechnology.

Anthropic effects on the fish community of Ribeirão Claro, Rio Claro, SP, Brazil

The effect of anthropic alterations such as drain discharge on a fish community was studied in the Ribeirão Claro River, municipality of Rio Claro, State of São Paulo, southeastern Brazil. Samples were made monthly in three different points along the river (headwaters, mid course, and confluence) between December, 2003 and March, 2004, which is the reproductive period for the majority of the species. The fish community of the Ribeirão Claro River showed a fair composition and diversity, with species rarely observed in studies made in the region, such as Paravandellia oxyfera and Callichthys callichthys. Indices of diversity and equitability showed different results when weight or the number of individuals were considered. Moreover, these indices did not reveal the typical increase in diversity from the headwaters toward the confluence, nor the loss of richness in the part altered by drain discharge. An interpretation should be made with caution, taking into account the diverse factors included in the computation. Similar to the diversity indices, the Morisita-Horn similarity index did not reveal a great difference in the fish community of the confluence of the river, mainly in relation to its mid course. The decline of species richness and trophic composition alteration in the disturbed part is clear, which shows a great dominance of piscivorous species.

Com o objetivo de verificar o efeito de alterações antrópicas, como o despejo de esgotos sobre a comunidade de peixes do Ribeirão Claro, SP, foram feitas coletas mensais em três pontos ao longo do rio (cabeceira, meio e foz) entre dezembro de 2003 e março de 2004, período reprodutivo para a maioria das espécies da região. O Ribeirão Claro apresentou boa composição e variedade em sua comunidade íctia, possuindo espécies raramente observadas em trabalhos na região, como Paravandellia oxyfera e Callichthys callichthys. Os índices de diversidade e equitabilidade apresentaram diferentes resultados quando considerado o peso ou número de indivíduos, além de não evidenciarem o comportamento típico de aumento da diversidade no sentido cabeceira-foz, nem a conseqüente perda de riqueza taxonômica no trecho impactado pelo despejo de esgoto doméstico. Sua interpretação deve ser feita com cautela, considerando os diversos aspectos incluídos em seus cálculos. Assim como os índices de diversidade, a similaridade de Morisita-Horn não ressaltou a grande diferença na comunidade da foz do Ribeirão Claro, em especial com relação ao trecho médio do rio. Fica evidente o declínio na riqueza de espécies no trecho poluído e a alteração em sua composição trófica, apresentando alta dominância de espécies piscívoras.