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1.
Ecol Evol ; 14(5): e11389, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38774133

RESUMO

Conservation decisions for bird diversity in the Afrotropics are often based on ecological studies utilizing diurnal bird species likely owing to difficulties associated with sampling nocturnal birds. It is therefore important to compare the sampling effectiveness of some of the available techniques that can be used in nocturnal bird surveys to guide future long-term survey efforts. Thus, we compared the sampling effectiveness of point count, acoustic recorder and camera trap for estimating nocturnal bird species richness and also across habitat types. We surveyed 20 points that were spaced at least 500 m apart in November and December 2021 in the Amurum Forest Reserve and its surroundings in Jos-Nigeria. At each point, we used two camera traps, one at the ground and the other at 2.0 m. We also used one acoustic recorder as well as a 15-min point count during each survey at each point. We encountered 11 nocturnal bird species, primarily nightjars but also owls. While we did not encounter any species with the camera traps, all 11 species were recorded using the acoustic recorder. All species except for Ketupa lacteaus were recorded in point count. Eight species were recorded in the gallery, seven in rocky and nine in savannah. Species richness and estimation using the acoustic recorder and point count were similar across habitat types. We conclude that either point count or acoustic recorders are useful for nocturnal bird surveys in Afrotropical environments. However, the choice of methods should be based on the research questions as some questions may be better answered by a specific method or even a combination of both.

2.
Oecologia ; 2024 May 17.
Artigo em Inglês | MEDLINE | ID: mdl-38758233

RESUMO

A fundamental question in invasive plant ecology is whether invasive and native plants have different ecological roles. Differences in functional traits have been explored, but we lack a comparison of the factors affecting the spread of co-occurring natives and invasives. Some have proposed that to succeed, invasives would colonize a wider variety of sites, would disperse farther, or would be better at colonizing sites with more available light and soil nutrients than natives. We examined patterns of spread over 70 years in a regenerating forest in Connecticut, USA, where both native and invasive species acted as colonizers. We compared seven invasive and 19 native species in the characteristics of colonized plots, variation in these characteristics, and the importance of site variables for colonization. We found little support for the hypotheses that invasive plants succeed by dispersing farther than native plants or by having a broader range of site tolerances. Colonization by invasives was also not more dependent on light than colonization by natives. Like native understory species, invasive plants spread into closed-canopy forest and species-rich communities despite earlier predictions that these communities would resist invasion. The biggest differences were that soil nitrate and the initial land cover being open field increased the odds of colonization for most invasives but only for some natives. In large part, though, the spread of native and invasive plants was affected by similar factors.

3.
Mol Phylogenet Evol ; 197: 108082, 2024 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-38705251

RESUMO

In addition to topography and climate, biogeographic dispersal has been considered to influence plant diversity in the Himalaya-Hengduan Mountains (HHM), yet, the mode and tempo of sky island dispersal and its influence on species richness has been little explored. Through phylogenetic analysis of Gaultheria ser. Trichophyllae, a sky island alpine clade within the HHM, we test the hypothesis that dispersal has affected current local species richness. We inferred the dynamics of biogeographic dispersal with correlation tests on direction, distance, occurrence time, and regional species richness. We found that G. ser. Trichophyllae originated at the end of the Miocene and mostly dispersed toward higher longitudes (eastward). In particular, shorter intra-regional eastward dispersals and longer inter-regional westward dispersals were most frequently observed. We detected a prevalence of eastward intra-region dispersals in both glacial periods and interglacials. These dispersals may have been facilitated by the reorganization of paleo-drainages and monsoon intensification through time. We suggest that the timing of dispersal corresponding to glacial periods and the prevalence of intra-region dispersal, rather than dispersal frequency, most influenced the pattern of species richness of G. ser. Trichophyllae. This study facilitates a more comprehensive understanding of biodiversity in the sky islands within the HHM.

4.
J Environ Manage ; 359: 120995, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38692030

RESUMO

Globally, rapid climate and land-use changes in alpine environments are posing severe risks to their bountiful biodiversity and ecosystem services. Currently, nature-based solutions are fast-emerging as the preferred approach to address the challenges of environmental sustainability. In alpine environments, cushion plants owing to their unique architecture and adaptability offer a potential nature-based system to plan biodiversity conservation and habitat restoration strategies. Here, we employed an analytical framework to test whether and how the cushion plants facilitate the sustenance of alpine plant diversity in Kashmir Himalaya. We specifically aimed to answer: what are the effects of the cushion plants on the patterns of alpine species richness and phylogenetic diversity, and whether these effects vary across spatial scales (local versus landscape), cushion types, and changing elevation. We randomly selected pairs of cushion and neighbouring non-cushion plots (size 100 m2) across 34 different alpine sites in the study region. Within each plot, we randomly laid three 5 m2 quadrats for vegetation sampling, and sampled a total of 204 quadrats in 68 plots with seven cushion types along elevation ranging from 3100 to 3850 m. Our results revealed positive effects of the cushions by supporting a higher community species richness (SR) and phylogenetic diversity (PD). The effects were consistent both at the local (i.e., quadrat) and landscape (i.e., plot) scales, but varied significantly with the cushion type. Interestingly, SR and PD showed an increasing trend with increase in elevation in cushion communities, thereby supporting stress gradient hypothesis. Along the elevational gradient, the cushion communities showed phylogenetic overdispersion, but clustering by non-cushions. Overall, our study provides empirical evidence to reinforce the role of the cushions as conservation refugia for an imperilled alpine plant diversity in the Himalaya. Looking ahead, we highlight the far-reaching implications of our findings in guiding the nature-based environmental management of alpine ecosystems worldwide.


Assuntos
Biodiversidade , Conservação dos Recursos Naturais , Ecossistema , Filogenia , Plantas
5.
Ecol Lett ; 27(5): e14427, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38698677

RESUMO

Tree diversity can promote both predator abundance and diversity. However, whether this translates into increased predation and top-down control of herbivores across predator taxonomic groups and contrasting environmental conditions remains unresolved. We used a global network of tree diversity experiments (TreeDivNet) spread across three continents and three biomes to test the effects of tree species richness on predation across varying climatic conditions of temperature and precipitation. We recorded bird and arthropod predation attempts on plasticine caterpillars in monocultures and tree species mixtures. Both tree species richness and temperature increased predation by birds but not by arthropods. Furthermore, the effects of tree species richness on predation were consistent across the studied climatic gradient. Our findings provide evidence that tree diversity strengthens top-down control of insect herbivores by birds, underscoring the need to implement conservation strategies that safeguard tree diversity to sustain ecosystem services provided by natural enemies in forests.


Assuntos
Artrópodes , Biodiversidade , Aves , Clima , Comportamento Predatório , Árvores , Animais , Artrópodes/fisiologia , Aves/fisiologia , Cadeia Alimentar , Larva/fisiologia
6.
Ecol Lett ; 27(5): e14430, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38714364

RESUMO

Wintering birds serve as vital climate sentinels, yet they are often overlooked in studies of avian diversity change. Here, we provide a continental-scale characterization of change in multifaceted wintering avifauna and examine the effects of climate change on these dynamics. We reveal a strong functional reorganization of wintering bird communities marked by a north-south gradient in functional diversity change, along with a superimposed mild east-west gradient in trait composition change. Assemblages in the northern United States saw contractions of the functional space and increases in functional evenness and originality, while the southern United States saw smaller contractions of the functional space and stasis in evenness and originality. Shifts in functional diversity were underlined by significant reshuffling in trait composition, particularly pronounced in the western and northern United States. Finally, we find strong contributions of climate change to this functional reorganization, underscoring the importance of wintering birds in tracking climate change impacts on biodiversity.


Assuntos
Biodiversidade , Aves , Mudança Climática , Estações do Ano , Animais , Aves/fisiologia , Estados Unidos
7.
Sci Total Environ ; : 173243, 2024 May 16.
Artigo em Inglês | MEDLINE | ID: mdl-38761946

RESUMO

Determining biological status of freshwater ecosystems is critical for ensuring ecosystem health and maintaining associated services to such ecosystems. Freshwater macroinvertebrates respond predictably to environmental disturbances and are widely used in biomonitoring programs. However, many freshwater species are difficult to capture and sort from debris or substrate and morphological identification is challenging, especially larval stages, damaged specimens, or hyperdiverse groups such as Diptera. The advent of high throughput sequencing technologies has enhanced DNA barcoding tools to automatise species identification for whole communities, as metabarcoding is increasingly used to monitor biodiversity. However, recent comparisons have revealed little congruence between morphological and molecular-based identifications. Using broad range universal primers for DNA barcode marker cox1, we compare community composition captured between morphological and molecular-based approaches from different sources - tissue-based (bulk benthic and bulk drift samples) and environmental DNA (eDNA, filtered water) metabarcoding - for samples collected along a gradient of anthropogenic disturbances. For comparability, metabarcoding taxonomic assignments were filtered by taxa included in the standardised national biological metric IBMWP. At the family level, bulk benthic metabarcoding showed the highest congruence with morphology, and the most abundant taxa were captured by all techniques. Richness captured by morphology and bulk benthic metabarcoding decreased along the gradient, whereas richness recorded by eDNA remained constant and increased downstream when sequencing bulk drift. Estimates of biological metrics were higher using molecular than morphological identification. At species level, diversity captured by bulk benthic samples were higher than the other techniques. Importantly, bulk benthic and eDNA metabarcoding captured different and complementary portions of the community - benthic versus water column, respectively - and their combined use is recommended. While bulk benthic metabarcoding can likely replace morphology using similar benthic biological indices, water eDNA will require new metrics because this technique sequences a different portion of the community.

8.
Sci Rep ; 14(1): 10938, 2024 05 13.
Artigo em Inglês | MEDLINE | ID: mdl-38740878

RESUMO

Plant disease often increases with N, decreases with CO2, and increases as biodiversity is lost (i.e., the dilution effect). Additionally, all these factors can indirectly alter disease by changing host biomass and hence density-dependent disease transmission. Yet over long periods of time as communities undergo compositional changes, these biomass-mediated pathways might fade, intensify, or even reverse in direction. Using a field experiment that has manipulated N, CO2, and species richness for over 20 years, we compared severity of a specialist rust fungus (Puccinia andropogonis) on its grass host (Andropogon gerardii) shortly after the experiment began (1999) and twenty years later (2019). Between these two sampling periods, two decades apart, we found that disease severity consistently increased with N and decreased with CO2. However, the relationship between diversity and disease reversed from a dilution effect in 1999 (more severe disease in monocultures) to an amplification effect in 2019 (more severe disease in mixtures). The best explanation for this reversal centered on host density (i.e., aboveground biomass), which was initially highest in monoculture, but became highest in mixtures two decades later. Thus, the diversity-disease pattern reversed, but disease consistently increased with host biomass. These results highlight the consistency of N and CO2 as drivers of plant disease in the Anthropocene and emphasize the critical role of host biomass-despite potentially variable effects of diversity-for relationships between biodiversity and disease.


Assuntos
Biodiversidade , Biomassa , Dióxido de Carbono , Nitrogênio , Doenças das Plantas , Dióxido de Carbono/metabolismo , Doenças das Plantas/microbiologia , Doenças das Plantas/prevenção & controle , Nitrogênio/metabolismo , Basidiomycota/genética , Poaceae/microbiologia
9.
Front Public Health ; 12: 1368017, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38746003

RESUMO

Background: Biodiversity has been recognized as a positive contributor to human health and wellbeing. Cardiovascular disease and cancer are the two most significant global health burdens, and understanding their relationship with biodiversity forms an essential step toward promoting biodiversity conservation and human health. Methods: The species richness of birds is a common indicator of biodiversity, given their vast numbers, distinctive distribution, and acute sensitivity to environmental disturbances. This ecological study utilized avian observation data derived from the eBird database, human health data from the International Health Metrics and Evaluation, and county-level statistics, including population characteristics, socio-economics, healthcare service, residential environment, and geographic and climatic characteristics in 2014. We aimed to extensively explore the individual associations between biodiversity (i.e., avian species richness) and age-standardized cause-specific mortalities for different types of cancers (29 conditions) and cardiovascular diseases (10 conditions) across the United States (US). Results: Our multiple regression analyses that adjusted for a variety of socio-demographic and geographical factors showed that increased rarefied species richness of birds was associated with reduced mortality rates for three of the five most common cancers, namely, tracheal, bronchus, and lung cancer, breast cancer (in women only), and colon and rectal cancer. For cardiovascular conditions, a similar relationship was observed for ischemic heart disease and cerebrovascular disease-the two most frequent causes of mortality. This study provided extended details regarding the beneficial effects of biodiversity on human health.


Assuntos
Biodiversidade , Aves , Doenças Cardiovasculares , Neoplasias , Humanos , Neoplasias/mortalidade , Doenças Cardiovasculares/mortalidade , Feminino , Masculino , Estados Unidos/epidemiologia , Animais , Pessoa de Meia-Idade , Idoso , Adulto
10.
Environ Sci Ecotechnol ; 20: 100404, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38585198

RESUMO

Climate change and anthropogenic activities are reshaping dryland ecosystems globally at an unprecedented pace, jeopardizing their stability. The stability of these ecosystems is crucial for maintaining ecological balance and supporting local communities. Yet, the mechanisms governing their stability are poorly understood, largely due to the scarcity of comprehensive field data. Here we show the patterns of community temporal stability and its determinants across an aridity spectrum by integrating a transect survey across China's drylands with remote sensing. Our results revealed a U-shaped relationship between community temporal stability and aridity, with a pivotal shift occurring around an aridity level of 0.88. In less arid areas (aridity level below 0.88), enhanced precipitation and biodiversity were associated with increased community productivity and stability. Conversely, in more arid zones (aridity level above 0.88), elevated soil organic carbon and biodiversity were linked to greater fluctuations in community productivity and reduced stability. Our study identifies a critical aridity threshold that precipitates significant changes in community stability in China's drylands, underscoring the importance of distinct mechanisms driving ecosystem stability in varying aridity contexts. These insights are pivotal for developing informed ecosystem management and policy strategies tailored to the unique challenges of dryland conservation.

11.
Int J Appl Earth Obs Geoinf ; 128: 103763, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38605982

RESUMO

To identify areas of high biodiversity and prioritize conservation efforts, it is crucial to understand the drivers of species richness patterns and their scale dependence. While classified land cover products are commonly used to explain bird species richness, recent studies suggest that unclassified remote-sensed images can provide equally good or better results. In our study, we aimed to investigate whether unclassified multispectral data from Landsat 8 can replace image classification for bird diversity modeling. Moreover, we also tested the Spectral Variability Hypothesis. Using the Atlas of Breeding Birds in the Czech Republic 2014-2017, we modeled species richness at two spatial resolutions of approx. 131 km2 (large squares) and 8 km2 (small squares). As predictors of the richness, we assessed 1) classified land cover data (Corine Land Cover 2018 database), 2) spectral heterogeneity (computed in three ways) and landscape composition derived from unclassified remote-sensed reflectance and vegetation indices. Furthermore, we integrated information about the landscape types (expressed by the most prevalent land cover class) into models based on unclassified remote-sensed data to investigate whether the landscape type plays a role in explaining bird species richness. We found that unclassified remote-sensed data, particularly spectral heterogeneity metrics, were better predictors of bird species richness than classified land cover data. The best results were achieved by models that included interactions between the unclassified data and landscape types, indicating that relationships between bird diversity and spectral heterogeneity vary across landscape types. Our findings demonstrate that spectral heterogeneity derived from unclassified multispectral data is effective for assessing bird diversity across the Czech Republic. When explaining bird species richness, it is important to account for the type of landscape and carefully consider the significance of the chosen spatial scale.

12.
Sci Rep ; 14(1): 8735, 2024 04 16.
Artigo em Inglês | MEDLINE | ID: mdl-38627432

RESUMO

In urban areas, diverse and complex habitats for biodiversity are often lacking. This lack of diversity not only compromises essential ecological processes, such as pollination and nutrient cycling, but also diminishes the resilience of urban ecosystems to pests and diseases. To enhance urban biodiversity, a possible solution is to integrate shrubs alongside trees, thereby increasing the overall amount of vegetation, structural complexity and the associated resource diversity. Here, using a common garden experiment involving a variety of trees and shrubs planted alone and in combination, we evaluate how canopy-associated invertebrate assemblages are influenced by vegetation type. In particular, we test whether the presence of shrubs, alone or with trees, results in increased abundance and taxonomic richness of invertebrates, compared to trees on their own. We found that the overall abundance of invertebrates, and that of specific functional groups (e.g., herbivores, pollinators, detritivores), was higher on shrubs, compared to trees, and when trees and shrubs were planted in combination (relative to trees on their own). Our results suggest that planting shrub and tree species with wide and dense crowns can increase the associated abundance and taxonomic and functional group richness of invertebrate communities. Overall, our findings indicate that urban planning would benefit from incorporating shrubs alongside urban trees to maximise invertebrate abundance, diversity and function in urban landscapes.


Assuntos
Biodiversidade , Ecossistema , Animais , Árvores , Plantas , Invertebrados
13.
PeerJ ; 12: e17209, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38646485

RESUMO

Changes to biodiversity from urbanization are occurring worldwide, and baseline data is vital to document the magnitude and direction of these alterations. We set out to document the biodiversity of an urban lake in Eastern Iowa that was devoid of baseline data prior to a renovation project that will convert the site into a major area for human recreation. Throughout the course of one year, we studied the biodiversity at Cedar Lake utilizing the citizen-science application iNaturalist coupled with semi-structured BioBlitz events, which we compared to previous opportunistic observations at the site. From a semi-structured approach to document biodiversity with citizen science, our analyses revealed more diverse community metrics over a shorter period compared to more than a decade of prior observations.


Assuntos
Biodiversidade , Ciência do Cidadão , Lagos , Urbanização , Humanos , Iowa
14.
Ecology ; : e4299, 2024 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-38650359

RESUMO

Information on tropical Asian vertebrates has traditionally been sparse, particularly when it comes to cryptic species inhabiting the dense forests of the region. Vertebrate populations are declining globally due to land-use change and hunting, the latter frequently referred as "defaunation." This is especially true in tropical Asia where there is extensive land-use change and high human densities. Robust monitoring requires that large volumes of vertebrate population data be made available for use by the scientific and applied communities. Camera traps have emerged as an effective, non-invasive, widespread, and common approach to surveying vertebrates in their natural habitats. However, camera-derived datasets remain scattered across a wide array of sources, including published scientific literature, gray literature, and unpublished works, making it challenging for researchers to harness the full potential of cameras for ecology, conservation, and management. In response, we collated and standardized observations from 239 camera trap studies conducted in tropical Asia. There were 278,260 independent records of 371 distinct species, comprising 232 mammals, 132 birds, and seven reptiles. The total trapping effort accumulated in this data paper consisted of 876,606 trap nights, distributed among Indonesia, Singapore, Malaysia, Bhutan, Thailand, Myanmar, Cambodia, Laos, Vietnam, Nepal, and far eastern India. The relatively standardized deployment methods in the region provide a consistent, reliable, and rich count data set relative to other large-scale pressence-only data sets, such as the Global Biodiversity Information Facility (GBIF) or citizen science repositories (e.g., iNaturalist), and is thus most similar to eBird. To facilitate the use of these data, we also provide mammalian species trait information and 13 environmental covariates calculated at three spatial scales around the camera survey centroids (within 10-, 20-, and 30-km buffers). We will update the dataset to include broader coverage of temperate Asia and add newer surveys and covariates as they become available. This dataset unlocks immense opportunities for single-species ecological or conservation studies as well as applied ecology, community ecology, and macroecology investigations. The data are fully available to the public for utilization and research. Please cite this data paper when utilizing the data.

15.
Ecology ; : e4300, 2024 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-38650396

RESUMO

Ongoing habitat loss and fragmentation caused by human activities represent one of the greatest causes of biodiversity loss. However, the effects of habitat loss and fragmentation are not felt equally among species. Here, we examined how habitat loss influenced the diversity and abundance of species from different trophic levels, with different traits, by taking advantage of an inadvertent experiment that created habitat islands from a once continuous forest via the creation of the Thousand Island Lake, a large reservoir in China. On 28 of these islands with more than a 9000-fold difference in their area (0.12-1154 ha), we sampled plants, herbivorous insects, and predatory insects using effort-controlled sampling and analyses. This allowed us to discern whether any observed differences in species diversity were due to passive sampling alone or to demographic effects that disproportionately influenced some species relative to others. We found that while most metrics of sampling effort-controlled diversity increased with island area, the strength of the effect was exacerbated for species in higher trophic levels. When we more explicitly examined differences in species composition among islands, we found that the pairwise difference in species composition among islands was dominated by species turnover but that nestedness increased with differences in island area, indicating that some species are more likely to be absent from smaller islands. Furthermore, by examining trends of several dispersal-related traits of species, we found that species with lower dispersal propensity tended to be those that were lost from smaller islands, which was observed for herbivorous and predatory insects. Our results emphasize the importance of incorporating within-patch demographic effects, as well as the taxa and traits of species when understanding the influence of habitat loss on biodiversity.

16.
Mar Environ Res ; 197: 106464, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38583356

RESUMO

Seagrass meadows are biodiversity hotspots for invertebrate species including decapods. Understanding the drivers of species abundance, richness and diversity of decapod assemblages is crucial for the conservation of such hotspots, but how drivers act across multiple spatial scales remains unexplored. Here we describe the decapod assemblages of Posidonia oceanica seagrass meadows and assess the influence of attributes from three increasing spatial scales (habitat, landscape, and geographical levels) on the assemblages' structure and composition, as well as the variability partitioning among each one of these levels. Overall, geographical level attributes (i.e., inlet aperture, confinement) affected the most the decapod assemblages, while we only found a modest contribution from habitat (e.g., detritus biomass, sediment organic matter) and landscape attributes (e.g., fragmentation). We suggest that decapod assemblages are driven by the interaction of multiple processes occurring at different scales and other highly stochastic phenomena such as larval dispersion and recruitment.


Assuntos
Alismatales , Decápodes , Animais , Ecossistema , Biodiversidade , Biomassa
17.
New Phytol ; 242(4): 1614-1629, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38594212

RESUMO

Species-specific differences in nutrient acquisition strategies allow for complementary use of resources among plants in mixtures, which may be further shaped by mycorrhizal associations. However, empirical evidence of this potential role of mycorrhizae is scarce, particularly for tree communities. We investigated the impact of tree species richness and mycorrhizal types, arbuscular mycorrhizal fungi (AM) and ectomycorrhizal fungi (EM), on above- and belowground carbon (C), nitrogen (N), and phosphorus (P) dynamics. Soil and soil microbial biomass elemental dynamics showed weak responses to tree species richness and none to mycorrhizal type. However, foliar elemental concentrations, stoichiometry, and pools were significantly affected by both treatments. Tree species richness increased foliar C and P pools but not N pools. Additive partitioning analyses showed that net biodiversity effects of foliar C, N, P pools in EM tree communities were driven by selection effects, but in mixtures of both mycorrhizal types by complementarity effects. Furthermore, increased tree species richness reduced soil nitrate availability, over 2 yr. Our results indicate that positive effects of tree diversity on aboveground nutrient storage are mediated by complementary mycorrhizal strategies and highlight the importance of using mixtures composed of tree species with different types of mycorrhizae to achieve more multifunctional afforestation.


Assuntos
Biodiversidade , Carbono , Micorrizas , Nitrogênio , Fósforo , Folhas de Planta , Solo , Árvores , Micorrizas/fisiologia , Árvores/microbiologia , Folhas de Planta/microbiologia , Folhas de Planta/metabolismo , Fósforo/metabolismo , Solo/química , Nitrogênio/metabolismo , Carbono/metabolismo , Biomassa , Microbiologia do Solo , Elementos Químicos , Especificidade da Espécie
18.
Cell Rep ; 43(4): 114074, 2024 Apr 23.
Artigo em Inglês | MEDLINE | ID: mdl-38625794

RESUMO

Post-transcriptional mRNA regulation shapes gene expression, yet how cis-elements and mRNA translation interface to regulate mRNA stability is poorly understood. We find that the strength of translation initiation, upstream open reading frame (uORF) content, codon optimality, AU-rich elements, microRNA binding sites, and open reading frame (ORF) length function combinatorially to regulate mRNA stability. Machine-learning analysis identifies ORF length as the most important conserved feature regulating mRNA decay. We find that Upf1 binds poorly translated and untranslated ORFs, which are associated with a higher decay rate, including mRNAs with uORFs and those with exposed ORFs after stop codons. Our study emphasizes Upf1's converging role in surveilling mRNAs with exposed ORFs that are poorly translated, such as mRNAs with long ORFs, ORF-like 3' UTRs, and mRNAs containing uORFs. We propose that Upf1 regulation of poorly/untranslated ORFs provides a unifying mechanism of surveillance in regulating mRNA stability and homeostasis in an exon-junction complex (EJC)-independent nonsense-mediated decay (NMD) pathway that we term ORF-mediated decay (OMD).


Assuntos
RNA Helicases , Estabilidade de RNA , Transativadores , Humanos , Regiões 3' não Traduzidas/genética , Degradação do RNAm Mediada por Códon sem Sentido , Fases de Leitura Aberta/genética , Biossíntese de Proteínas , RNA Helicases/metabolismo , RNA Helicases/genética , RNA Mensageiro/metabolismo , RNA Mensageiro/genética , Transativadores/metabolismo , Transativadores/genética , Células HEK293
19.
J Environ Manage ; 359: 120959, 2024 May.
Artigo em Inglês | MEDLINE | ID: mdl-38678898

RESUMO

Present study examines the possible improvement of thermal discomfort mitigation. Unlike prior researches, which focused primarily on cooling effects of urban blue space, this study, instead of physical presence of blue space considers its hydrological components. The aim of the study is to better understand the role hydrological components like water consistency depth etc. In temperature regulation. The work uses field surveys and modeling to demonstrate how these hydrological factors influence the cooling effect of blue space, providing insights on urban thermal management. To fulfill the purpose, spatial association of hydrological components blue space with its thermal environment and cooling effects was assessed. The control of hydrological components on the surrounding air temperature was examined by conducting case studies. RESULTS: reveals greater hydro-duration, deeper water, and higher Water Presence Frequency (WPF) produce greater cooling effects. The study demonstrates a favorable correlation between hydrological richness and temperature reduction. The study also analyzes how land use and wetland size affect temperature, emphasizing the significance of hydrological conservation and restoration for successful temperature mitigation. Due to their hydrology, larger wetlands are able to moderate temperature to some extent, whereas smaller, fragmented wetlands being hydrologically poor are not so influential in this regard. With these results, the present study reaches beyond to the general understanding regarding the cooling effects of the urban blue spaces. While the previous studies primarily focused on estimating the cooling effect of urban blue space, the current one shows its synchronization with the hydrological characteristics. Novelty also entrusts here, through the modeling and field survey current study demonstrates deeper and consistent water coverage in the urban blue space for maximum period of a year pronounces the cooling effect. In addition, in this cooling effect, the role of land use which is a strong determinant of many aspects of the urban environment is also highlighted. Since all these findings define specific hydrological feature, the study has several practical implications. Mare restoration of urban blue space is not enough to mitigate the thermal discomfort. In order to optimize the cooling effect, the conservation of the hydrological richness is essential. The hydrological richness of the smaller wetlands and the edge of the larger wetlands is to be improved. The connection of these wetlands with the adjacent mighty may strengthen the hydrology. The vegetation was found to promote the cooling effect whereas shorter building helped in spreading the cooling effect. Such finding drives to incorporate the blue space with the green infrastructure along with restricting the building height atleast at the edge of the blue space.


Assuntos
Hidrologia , Temperatura , Áreas Alagadas
20.
PeerJ Comput Sci ; 10: e1967, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38660161

RESUMO

With the evolution of the Internet and multimedia technologies, delving deep into multimedia data for predicting topic richness holds significant practical implications in public opinion monitoring and data discourse power competition. This study introduces an algorithm for predicting English topic richness based on the Transformer model, applied specifically to the Twitter platform. Initially, relevant data is organized and extracted following an analysis of Twitter's characteristics. Subsequently, a feature fusion approach is employed to mine, extract, and construct features from Twitter blogs and users, encompassing blog features, topic features, and user features, which are amalgamated into multimodal features. Lastly, the combined features undergo training and learning using the Transformer model. Through experimentation on the Twitter topic richness dataset, our algorithm achieves an accuracy of 82.3%, affirming the efficacy and superior performance of the proposed approach.

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