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1.
J Agric Food Chem ; 70(44): 14247-14254, 2022 Nov 09.
Artigo em Inglês | MEDLINE | ID: mdl-36302508

RESUMO

l-Aspartate is an important chemical in the food and pharmaceutical industries. Herein, a dual-enzyme system was constructed to synthesize l-aspartate from maleic anhydride at 50 °C, which can reduce the byproduct production. Maleate transformed from maleic anhydride in the solution was converted into l-aspartate via fumarate catalyzed by maleate isomerase (MaiA) and thermostable aspartase (AspB), respectively. Because MaiA is a rate-limiting enzyme, enzyme activities of various MaiAs were compared, and the efficient and thermostable maleate isomerase AaMaiA from Alicyclobacillus acidoterrestris was chosen. The Kcat/Km value of AaMaiA was 264.4 mM-1 min-1. AaMaiA and AspB were coexpressed in E. coli to produce l-aspartate. To improve the l-aspartate production rate, the ribosome binding site (RBS) sequence located upstream of AaMaiA was optimized and the Tat signal peptide was fused with AaMaiA. The conversion rate was 96% within 60 min, and the intermediate was not detected, the possible reason of which is that high temperature inhibits the activity of bacterial endogenous enzymes, but functional enzymes remain active. Cells from fermentation produced 243.6 g/L (1.83 M) of l-aspartate with a 2 M substrate. Our study revealed an effective method to produce l-aspartate without using gene knockout and provided a strategy for l-aspartate production in the industrial field.


Assuntos
Aspartato Amônia-Liase , Ácido Aspártico , Anidridos Maleicos/metabolismo , Escherichia coli/metabolismo , Temperatura , Sequência de Aminoácidos , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/genética , Aspartato Amônia-Liase/metabolismo
2.
Int J Biol Macromol ; 164: 4165-4172, 2020 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-32888990

RESUMO

ß-Aminobutyric acid (BABA) can be widely used in the preparation of anti-tumor drugs, AIDS drugs, penicillin antibiotics, and plant initiators. However, the efficient, economical, and environmentally friendly production of BABA still faces challenges. Its important production enzyme, aspartase, catalyzes the substrate crotonic acid, and depends on harsh conditions, such as high temperatures and the presence of strong alkali. Here, we modified the surface charge of the enzyme to enable it to become more negatively charged (K19E, N87E, N125D, S133D, Q262E, and N451E; from -60 to -80), reducing its optimal pH from 9.0 to 8.0. The M20 enzyme showed improved specific activity (400.21 mU/mg at pH 8.0; 2.47-fold that of aspartase), and at pH 7.0, its activity increased 3-fold. The thermal stability of the enzyme was also improved. For the production of BABA, a 500 g/L whole-cell transformation was obtained with a 1.41-fold increase in yield, and the final production of BABA reached 556.1 g/L within 12 h. Our method provides a new strategy for modifying the characteristics of the enzyme through the modification of its surface charge, which also represents the first modification of the optimal pH for aspartase.


Assuntos
Aminobutiratos/síntese química , Aspartato Amônia-Liase/química , Concentração de Íons de Hidrogênio , Engenharia de Proteínas , Eletricidade Estática , Aspartato Amônia-Liase/genética , Sítios de Ligação , Estabilidade Enzimática , Cinética , Simulação de Dinâmica Molecular , Mutagênese Sítio-Dirigida , Ligação Proteica , Conformação Proteica , Proteínas Recombinantes , Relação Estrutura-Atividade , Propriedades de Superfície
3.
Nat Chem Biol ; 14(7): 664-670, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-29785057

RESUMO

Introduction of innovative biocatalytic processes offers great promise for applications in green chemistry. However, owing to limited catalytic performance, the enzymes harvested from nature's biodiversity often need to be improved for their desired functions by time-consuming iterative rounds of laboratory evolution. Here we describe the use of structure-based computational enzyme design to convert Bacillus sp. YM55-1 aspartase, an enzyme with a very narrow substrate scope, to a set of complementary hydroamination biocatalysts. The redesigned enzymes catalyze asymmetric addition of ammonia to substituted acrylates, affording enantiopure aliphatic, polar and aromatic ß-amino acids that are valuable building blocks for the synthesis of pharmaceuticals and bioactive compounds. Without a requirement for further optimization by laboratory evolution, the redesigned enzymes exhibit substrate tolerance up to a concentration of 300 g/L, conversion up to 99%, ß-regioselectivity >99% and product enantiomeric excess >99%. The results highlight the use of computational design to rapidly adapt an enzyme to industrially viable reactions.


Assuntos
Aspartato Amônia-Liase/química , Biologia Computacional , Aminação , Aspartato Amônia-Liase/metabolismo , Bacillus/enzimologia , Biocatálise
4.
Appl Biochem Biotechnol ; 182(2): 792-803, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27988856

RESUMO

Aspartase (L-aspartate ammonia lyase, EC 4.3.1.1) catalyses the reversible amination and deamination of L-aspartic acid to fumaric acid which can be used to produce important biochemical. In this study, we have explored the characteristics of aspartase from Pseudomonas aeruginosa PAO1 (PA-AspA). To overproduce PA-AspA, the 1425-bp gene was introduced in Escherichia coli BL21 and purified. A 51.0-kDa protein was observed as a homogenous purified protein on SDS-PAGE. The enzyme was optimally active at pH 8.0 and 35 °C. PA-AspA has retained 56% activity after 7 days of incubation at 35 °C, which displays the hyperthermostablility characteristics of the enzyme. PA-AspA is activated in the presence of metal ions and Mg2+ is found to be most effective. Among the substrates tested for specificity of PA-AspA, L-phenylalanine (38.35 ± 2.68) showed the highest specific activity followed by L-aspartic acid (31.21 ± 3.31) and fumarate (5.42 ± 2.94). K m values for L-phenylalanine, L-aspartic acid and fumarate were 1.71 mM, 0.346 µM and 2 M, respectively. The catalytic efficiency (k cat/K m) for L-aspartic acid (14.18 s-1 mM-1) was higher than that for L-phenylalanine (4.65 s-1 mM-1). For bioconversion, from an initial concentration of 1000 mM of fumarate and 30 mM of L-phenylalanine, PA-AspA was found to convert 395.31 µM L-aspartic acid and 3.47 mM cinnamic acid, respectively.


Assuntos
Aspartato Amônia-Liase/química , Ácido Aspártico/química , Proteínas de Bactérias/química , Cinamatos/química , Pseudomonas aeruginosa/enzimologia , Temperatura Alta , Concentração de Íons de Hidrogênio
5.
J Mol Graph Model ; 51: 113-9, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24875395

RESUMO

Aspartate ammonia lyase (Asp) is one of three types of ammonia lyases specific for aspartate or its derivatives as substrates, which catalyzes the reversible reaction of l-aspartate to yield fumarate and ammonia. In this paper, the catalytic mechanism of Asp has been studied by using combined quantum-mechanical/molecular-mechanical (QM/MM) approach. The calculation results indicate that the overall reaction only contains two elementary steps. The first step is the abstraction of Cß proton of l-aspartate by Ser318, which is calculated to be rate limiting. The second step is the cleavage of CαN bond of l-aspartate to form fumarate and ammonia. Ser318 functions as the catalytic base, whereas His188 is a dispensable residue, but its protonation state can influence the active site structure and the existing form of leaving amino group, thereby influences the activity of the enzyme, which can well explain the pH dependence of enzymatic activity. Mutation of His188 to Ala only changes the active site structure and slightly elongates the distance of Cß proton of substrate with Ser318, causing the enzyme to remain significant but reduced activity.


Assuntos
Aspartato Amônia-Liase/química , Proteínas de Bactérias/química , Ácido Aspártico/química , Bacillus/enzimologia , Biocatálise , Domínio Catalítico , Simulação por Computador , Ligação de Hidrogênio , Modelos Moleculares , Oxirredução , Ligação Proteica , Estrutura Secundária de Proteína , Teoria Quântica , Termodinâmica
6.
ACS Chem Biol ; 7(10): 1618-28, 2012 Oct 19.
Artigo em Inglês | MEDLINE | ID: mdl-22834890

RESUMO

Ammonia lyases catalyze the formation of α,ß-unsaturated bonds by the elimination of ammonia from their substrates. This conceptually straightforward reaction has been the emphasis of many studies, with the main focus on the catalytic mechanism of these enzymes and/or the use of these enzymes as catalysts for the synthesis of enantiomerically pure α-amino acids. In this Review aspartate ammonia lyase and 3-methylaspartate ammonia lyase, which represent two different enzyme superfamilies, are discussed in detail. In the past few years, the three-dimensional structures of these lyases in complex with their natural substrates have revealed the details of two elegant catalytic strategies. These strategies exploit similar deamination mechanisms that involve general-base catalyzed formation of an enzyme-stabilized enolate anion (aci-carboxylate) intermediate. Recent progress in the engineering and application of these enzymes to prepare enantiopure l-aspartic acid derivatives, which are highly valuable as tools for biological research and as chiral building blocks for pharmaceuticals and food additives, is also discussed.


Assuntos
Amônia-Liases/metabolismo , Aspartato Amônia-Liase/metabolismo , Amônia/química , Amônia-Liases/química , Aspartato Amônia-Liase/química , Bactérias/enzimologia , Biocatálise , Domínio Catalítico , Modelos Moleculares , Engenharia de Proteínas
7.
Biochemistry ; 51(21): 4237-43, 2012 May 29.
Artigo em Inglês | MEDLINE | ID: mdl-22551392

RESUMO

Members of the aspartase/fumarase superfamily share a common tertiary and quaternary fold, as well as a similar active site architecture; the superfamily includes aspartase, fumarase, argininosuccinate lyase, adenylosuccinate lyase, δ-crystallin, and 3-carboxy-cis,cis-muconate lactonizing enzyme (CMLE). These enzymes all process succinyl-containing substrates, leading to the formation of fumarate as the common product (except for the CMLE-catalyzed reaction, which results in the formation of a lactone). In the past few years, X-ray crystallographic analysis of several superfamily members in complex with substrate, product, or substrate analogues has provided detailed insights into their substrate binding modes and catalytic mechanisms. This structural work, combined with earlier mechanistic studies, revealed that members of the aspartase/fumarase superfamily use a common catalytic strategy, which involves general base-catalyzed formation of a stabilized aci-carboxylate (or enediolate) intermediate and the participation of a highly flexible loop, containing the signature sequence GSSxxPxKxN (named the SS loop), in substrate binding and catalysis.


Assuntos
Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/metabolismo , Fumarato Hidratase/química , Fumarato Hidratase/metabolismo , Adenilossuccinato Liase/química , Adenilossuccinato Liase/genética , Adenilossuccinato Liase/metabolismo , Sequência de Aminoácidos , Argininossuccinato Liase/química , Argininossuccinato Liase/genética , Argininossuccinato Liase/metabolismo , Aspartato Amônia-Liase/genética , Catálise , Domínio Catalítico , Sequência Conservada , Escherichia coli/enzimologia , Escherichia coli/genética , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Fumarato Hidratase/genética , Humanos , Liases Intramoleculares/química , Liases Intramoleculares/genética , Liases Intramoleculares/metabolismo , Modelos Moleculares , Dados de Sequência Molecular , Estrutura Quaternária de Proteína , Estrutura Terciária de Proteína , Saccharomyces cerevisiae/enzimologia , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/química , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , delta-Cristalinas/química , delta-Cristalinas/genética , delta-Cristalinas/metabolismo
8.
Bioprocess Biosyst Eng ; 35(8): 1437-44, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22527030

RESUMO

L-aspartate ammonia-lyase from Bacillus sp. YM55-1 (AspB, EC 4.3.1.1) catalyzes the reversible conversion of L-aspartate (Asp) into fumarate and ammonia with a high specific activity toward the substrate. AspB was expressed in Escherichia coli and partially purified by heat precipitation and saturation with ammonium sulfate reaching purification factor of 7.7 and specific activity of 334 U/mg of protein. AspB was immobilized by covalent attachment on Eupergit® C (epoxy support) and MANA-agarose (amino support), and entrapment in LentiKats® (polyvinyl alcohol) with retained activities of 24, 85 and 63 %, respectively. Diffusional limitations were only observed for the enzyme immobilized in LentiKats® and were overcome by increasing substrate concentration. Free and immobilized AspB were used for the synthesis of aspartate achieving high product concentration (≥450 mM) after 24 h of reaction. Immobilized biocatalysts were efficiently reused in 5 cycles of Asp synthesis, keeping over 90 % of activity and reaching over 90 % of conversion in all the cases.


Assuntos
Aspartato Amônia-Liase/química , Ácido Aspártico/biossíntese , Bacillus/enzimologia , Proteínas de Bactérias/química , Enzimas Imobilizadas/química , Aspartato Amônia-Liase/genética , Ácido Aspártico/química , Bacillus/genética , Proteínas de Bactérias/genética , Catálise , Enzimas Imobilizadas/genética , Escherichia coli , Concentração de Íons de Hidrogênio , Proteínas Recombinantes/química , Proteínas Recombinantes/genética
9.
Appl Biochem Biotechnol ; 167(5): 991-1001, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22328292

RESUMO

Aspartase (L-aspartate ammonia-lyase; EC 4.3.1.1) catalyzes the reversible amination of fumaric acid to produce L-aspartic acid. Aspartase coding gene (aspA) of Aeromonas media NFB-5 was cloned, sequenced, and expressed with His tag using pET-21b⁺ expression vector in Escherichia coli BL21. Higher expression was obtained with IPTG (1.5 mM) induction for 5 h at 37 °C in LB medium supplemented with 0.3% K2HPO4 and 0.3% KH2PO4. Recombinant His tagged aspartase was purified using Ni-NTA affinity chromatography and characterized for various biochemical and kinetic parameters. The purified aspartase showed optimal activity at pH 8.5 and 8.0 in the presence and absence of magnesium ions, respectively. The optimum temperature was determined to be 35 °C. The enzyme showed apparent K(m) and V(max) values for L-aspartate as 2.01 mM and 114 U/mg, respectively. The enzyme was stable in pH range of 6.5-9.5 and temperature up to 45 °C. Divalent metal ion requirement of enzyme was efficiently fulfilled by Mg²âº, Mn²âº, and Ca²âº ions. The cloned gene (aspA) product showed molecular weight of approximately 51 kDa by SDS-PAGE, which is in agreement with the molecular weight calculated from putative amino acid sequence. This is the first report on expression and characterization of recombinant aspartase from A. media.


Assuntos
Aeromonas/enzimologia , Aspartato Amônia-Liase/isolamento & purificação , Aspartato Amônia-Liase/metabolismo , Cromatografia de Afinidade , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Aeromonas/genética , Sequência de Aminoácidos , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/genética , Clonagem Molecular , Entropia , Ativação Enzimática , Estabilidade Enzimática , Meia-Vida , Concentração de Íons de Hidrogênio , Cinética , Metais/farmacologia , Dados de Sequência Molecular , Peso Molecular , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Temperatura
10.
Biochemistry ; 50(27): 6053-62, 2011 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-21661762

RESUMO

Aspartate ammonia lyases (or aspartases) catalyze the reversible deamination of L-aspartate into fumarate and ammonia. The lack of crystal structures of complexes with substrate, product, or substrate analogues so far precluded determination of their precise mechanism of catalysis. Here, we report crystal structures of AspB, the aspartase from Bacillus sp. YM55-1, in an unliganded state and in complex with L-aspartate at 2.4 and 2.6 Å resolution, respectively. AspB forces the bound substrate to adopt a high-energy, enediolate-like conformation that is stabilized, in part, by an extensive network of hydrogen bonds between residues Thr101, Ser140, Thr141, and Ser319 and the substrate's ß-carboxylate group. Furthermore, substrate binding induces a large conformational change in the SS loop (residues G(317)SSIMPGKVN(326)) from an open conformation to one that closes over the active site. In the closed conformation, the strictly conserved SS loop residue Ser318 is at a suitable position to act as a catalytic base, abstracting the Cß proton of the substrate in the first step of the reaction mechanism. The catalytic importance of Ser318 was confirmed by site-directed mutagenesis. Site-directed mutagenesis of SS loop residues, combined with structural and kinetic analysis of a stable proteolytic AspB fragment, further suggests an important role for the small C-terminal domain of AspB in controlling the conformation of the SS loop and, hence, in regulating catalytic activity. Our results provide evidence supporting the notion that members of the aspartase/fumarase superfamily use a common catalytic mechanism involving general base-catalyzed formation of a stabilized enediolate intermediate.


Assuntos
Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/metabolismo , Bacillus/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Domínio Catalítico , Amônia/química , Bacillus/genética , Proteínas de Bactérias/genética , Domínio Catalítico/genética , Cristalografia por Raios X , Fumaratos/química , Ligantes , Família Multigênica/genética , Ligação Proteica , Conformação Proteica , Relação Quantitativa Estrutura-Atividade , Serina/química , Serina/metabolismo , Especificidade por Substrato
11.
FEBS Lett ; 584(11): 2311-4, 2010 Jun 03.
Artigo em Inglês | MEDLINE | ID: mdl-20371246

RESUMO

Enteric bacteria have developed various survival systems that protect against acid stress. In this study, an aspartate-dependent acid survival system is characterized in Yersinia pseudotuberculosis. The expression of aspartase (AspA) was confirmed to be increased at acidic pH by proteomic and lacZ fusion analyses. Addition of aspartate increased acid survival of the wild type but not the aspA knockout mutant. AspA increases acid survival by producing ammonia as demonstrated by mutation and in vitro enzyme activity analyses. This is the first demonstration that an enzyme involved in aspartate metabolism plays a role in acid survival in an enteric bacterium.


Assuntos
Ácidos/metabolismo , Aspartato Amônia-Liase/metabolismo , Ácido Aspártico/metabolismo , Yersinia pseudotuberculosis/metabolismo , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/genética , Ácido Aspártico/genética , Mutação , Yersinia pseudotuberculosis/enzimologia , Yersinia pseudotuberculosis/genética
12.
Vet Microbiol ; 136(1-2): 173-6, 2009 Apr 14.
Artigo em Inglês | MEDLINE | ID: mdl-19019573

RESUMO

The goals of this study were to evaluate titers of antibodies against Lawsonia intracellularis in 68 resident broodmares from a farm known to be endemic for equine proliferative enteropathy (EPE) and to evaluate maternal antibodies, occurrence of seroconversion and fecal shedding in their foals. Serum samples collected from mares at delivery and from foals pre- and post-colostrum ingestion and monthly thereafter were tested for the presence of L. intracellularis antibodies by immunoperoxidase monolayer assay (IPMA). Further, feces collected from mares at delivery and foals post-partum and monthly thereafter were assayed for L. intracellularis using real-time PCR. Thirty-seven mares (54.4%) had detectable antibody titers (> or =60) against L. intracellularis by IPMA at the time of foaling. Passive transfer of colostral antibodies against L. intracellularis was documented in 37 foals (54.4%) and the colostral antibodies remained detectable in the serum of foals for 1-3 months. Overall, 22 foals (33.3%) showed evidence of natural exposure to L. intracellularis throughout the study period, however, none of the study foals developed signs compatible with EPE. The serological results showed that mares residing on a farm known to be endemic for EPE are routinely exposed to L. intracellularis and that antibodies against L. intracellularis are passively transferred to foals.


Assuntos
Infecções por Desulfovibrionaceae/veterinária , Doenças Endêmicas/veterinária , Enterite/veterinária , Doenças dos Cavalos/epidemiologia , Doenças dos Cavalos/microbiologia , Lawsonia (Bactéria)/isolamento & purificação , Animais , Animais Recém-Nascidos , Anticorpos Antibacterianos/sangue , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/genética , California/epidemiologia , DNA Bacteriano/química , DNA Bacteriano/genética , Infecções por Desulfovibrionaceae/epidemiologia , Infecções por Desulfovibrionaceae/imunologia , Infecções por Desulfovibrionaceae/microbiologia , Enterite/epidemiologia , Enterite/imunologia , Enterite/microbiologia , Fezes/microbiologia , Feminino , Doenças dos Cavalos/imunologia , Cavalos , Imunidade Materno-Adquirida/imunologia , Técnicas Imunoenzimáticas/veterinária , Lawsonia (Bactéria)/genética , Lawsonia (Bactéria)/imunologia , Reação em Cadeia da Polimerase/veterinária , Estudos Soroepidemiológicos , Estatísticas não Paramétricas
13.
Chemistry ; 14(32): 10094-100, 2008.
Artigo em Inglês | MEDLINE | ID: mdl-18844200

RESUMO

The gene encoding aspartate ammonia lyase (aspB) from Bacillus sp. YM55-1 has been cloned and overexpressed, and the recombinant enzyme containing a C-terminal His(6) tag has been purified to homogeneity and subjected to kinetic characterization. Kinetic studies have shown that the His(6) tag does not affect AspB activity. The enzyme processes L-aspartic acid, but not D-aspartic acid, with a K(m) of approximately 15 mM and a k(cat) of approximately 40 s(-1). By using this recombinant enzyme in the reverse reaction, a set of four N-substituted aspartic acids were prepared by the Michael addition of hydroxylamine, hydrazine, methoxylamine, and methylamine to fumarate. Both hydroxylamine and hydrazine were found to be excellent substrates for AspB. The k(cat) values are comparable to those observed for the AspB-catalyzed addition of ammonia to fumarate ( approximately 90 s(-1)), whereas the K(m) values are only slightly higher. The products of the enzyme-catalyzed addition of hydrazine, methoxylamine, and methylamine to fumarate were isolated and characterized by NMR spectroscopy and HPLC analysis, which revealed that AspB catalyzes all the additions with excellent enantioselectivity (>97 % ee). Its broad nucleophile specificity and high catalytic activity make AspB an attractive enzyme for the enantioselective synthesis of N-substituted aspartic acids, which are interesting building blocks for peptide and pharmaceutical synthesis as well as for peptidomimetics.


Assuntos
Aspartato Amônia-Liase/metabolismo , Ácido Aspártico/síntese química , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/genética , Ácido Aspártico/química , Bacillus/enzimologia , Estrutura Molecular , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Estereoisomerismo , Especificidade por Substrato
14.
Microbiology (Reading) ; 154(Pt 5): 1271-1280, 2008 May.
Artigo em Inglês | MEDLINE | ID: mdl-18451035

RESUMO

It is established that cells of Yersinia pestis, the causative agent of bubonic plague, excrete l-aspartic acid at the expense of exogenous l-glutamic acid during expression of the low-calcium response. Results of enzymic analysis provided here suggest that a previously defined deficiency of aspartase (AspA) accounts for this phenomenon rather than an elevated oxaloacetate pool. The only known distinction between most sequenced isolates of aspA from Y. pestis and the active gene in Yersinia pseudotuberculosis (the immediate progenitor of Y. pestis) is a single base transversion (G.C-->T.A) causing replacement of leucine (encoded by UUG) for valine (encoded by GUG) at amino acid position 363. The gene from Y. pestis KIM possesses a unique second transversion (G.C-->T.A) at amino acid 146 causing substitution of aspartic acid (encoded by GAU) with tyrosine (encoded by UAU). We show in this study that Y. pestis expresses aspA as cross-reacting immunological material (CRIM). Functional and inactive aspA of Y. pseudotuberculosis PB1 and Y. pestis KIM, respectively, were then cloned and expressed in AspA-deficient Escherichia coli. After purification to near homogeneity, the products were subjected to biochemical analysis and found to exhibit similar secondary, tertiary and quaternary (tetrameric) structures as well as comparable Michaelis constants for l-aspartic acid. However, the k(cat) of the Y. pestis CRIM of strain KIM is only about 0.1 % of that determined for the active AspA of Y. pseudotuberculosis. Return of valine for leucine at position 363 of the Y. pestis enzyme restored normal turnover (k(cat) 86+/-2 s(-1)) provided that the amino acid substitution at position 146 was also reversed. These observations have important implications for understanding the nature of the stringent low-calcium response of Y. pestis and its role in promoting acute disease.


Assuntos
Aspartato Amônia-Liase/genética , Aspartato Amônia-Liase/metabolismo , Mutação de Sentido Incorreto , Yersinia pestis/enzimologia , Sequência de Aminoácidos , Substituição de Aminoácidos/genética , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/isolamento & purificação , Ácido Aspártico/metabolismo , Dicroísmo Circular , Clonagem Molecular , Escherichia coli/genética , Ácido Glutâmico/metabolismo , Cinética , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Conformação Proteica , Alinhamento de Sequência , Yersinia pestis/genética , Yersinia pseudotuberculosis/enzimologia , Yersinia pseudotuberculosis/genética
15.
Mol Microbiol ; 69(1): 77-93, 2008 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-18433445

RESUMO

Amino acids are key carbon and energy sources for the asaccharolytic food-borne human pathogen Campylobacter jejuni. During microaerobic growth in amino acid rich complex media, aspartate, glutamate, proline and serine are the only amino acids significantly utilized by strain NCTC 11168. The catabolism of aspartate and glutamate was investigated. An aspartase (aspA) mutant (unable to utilize any amino acid except serine) and a Cj0762c (aspB) mutant lacking aspartate:glutamate aminotransferase (unable to utilize glutamate), were severely growth impaired in complex media, and an aspA sdaA mutant (also lacking serine dehydratase) failed to grow in complex media unless supplemented with pyruvate and fumarate. Aspartase was shown by activity and proteomic analyses to be upregulated by oxygen limitation, and aspartate enhanced oxygen-limited growth of C. jejuni in an aspA-dependent manner. Stoichiometric aspartate uptake and succinate excretion involving the redundant DcuA and DcuB transporters indicated that in addition to a catabolic role, AspA can provide fumarate for respiration. Significantly, an aspA mutant of C. jejuni 81-176 was impaired in its ability to persist in the intestines of outbred chickens relative to the parent strain. Together, our data highlight the dual function of aspartase in C. jejuni and suggest a role during growth in the avian gut.


Assuntos
Aminoácidos/metabolismo , Aspartato Aminotransferases/metabolismo , Aspartato Amônia-Liase/metabolismo , Proteínas de Bactérias/metabolismo , Campylobacter jejuni/enzimologia , Campylobacter jejuni/crescimento & desenvolvimento , Oxigênio/metabolismo , Aerobiose , Animais , Aspartato Aminotransferases/genética , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/genética , Ácido Aspártico/metabolismo , Proteínas de Bactérias/genética , Vias Biossintéticas , Infecções por Campylobacter/microbiologia , Infecções por Campylobacter/veterinária , Campylobacter jejuni/química , Campylobacter jejuni/genética , Galinhas , Meios de Cultura/química , Transportadores de Ácidos Dicarboxílicos/genética , Transportadores de Ácidos Dicarboxílicos/metabolismo , Fumaratos/metabolismo , Ácido Glutâmico/metabolismo , Humanos , Cinética , Mutação , Transcrição Gênica
16.
Biomol Eng ; 22(1-3): 95-101, 2005 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-15857789

RESUMO

Aspartase (l-aspartate ammonia-lyase, EC 4.3.1.1), which catalyzes the reversible deamination of l-aspartic acid to yield fumaric acid and ammonia, is highly selective towards l-aspartic acid. We screened for enzyme variants with altered substrate specificity by a directed evolution method. Random mutagenesis was performed on an Escherichia coli aspartase gene (aspA) by error-prone PCR to construct a mutant library. The mutant library was introduced to E. coli and the transformants were screened for production of fumaric acid-mono amide from l-aspartic acid-alpha-amide. Through the screening, one mutant, MA2100, catalyzing deamination of l-aspartic acid-alpha-amide was achieved. Gene analysis of the MA2100 mutant indicated that the mutated enzyme had a K327N mutation. The characteristics of the mutated enzyme were examined. The optimum pH values for the l-aspartic acid and l-aspartic acid-alpha-amide of the mutated enzyme were pH 8.5 and 6.0, respectively. The K(m) value and V(max) value for the l-aspartic acid of the mutated enzyme were 28.3 mM and 0.26 U/mg, respectively. The K(m) value and V(max) value for the l-aspartic acid-alpha-amide of the mutated enzyme were 1450 mM and 0.47 U/mg, respectively. This is the first report describing the alteration of the substrate specificity of aspartase, an industrially important enzyme.


Assuntos
Aspartato Amônia-Liase/química , Evolução Molecular Direcionada , Proteínas de Escherichia coli/química , Escherichia coli/enzimologia , Aspartato Amônia-Liase/genética , Evolução Molecular Direcionada/métodos , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Especificidade por Substrato/genética
17.
Biochem Biophys Res Commun ; 331(1): 107-12, 2005 May 27.
Artigo em Inglês | MEDLINE | ID: mdl-15845365

RESUMO

With combinative functionalities as well as the improved activity and stability, the novel hybrid enzymes (HEs) from the heterogeneous enzymes of alpha-aspartyl dipeptidase (PepE, monomer) and l-aspartase (l-AspA, tetramer) were constructed successfully by gene random deletion strategy. The wild-type hybrid enzyme (WHE) and the evolved hybrid enzyme (EHE) were selected, respectively, upon the phenotype and the enzyme activity. The relative activity of the WHE tested was about 110% of the wild-type PepE and 26% of the wild-type l-AspA, whilst the activity of EHE was about 340% of the PepE and 87% of the l-AspA. In comparison to its individual wild-type enzymes, the EHE exhibited an improved thermostability, when examined at the enzyme concentration of 10(-7)mol/L, but the WHE showed a reduced thermostability. The activity of the EHE was about 3-fold compared to that of the WHE. The current results give a good example that the hybridization of enzymes could be attained between the monomer and multimer enzymes. In addition, they also indicate that construction hybrid enzyme from evolved enzymes is feasible.


Assuntos
Aspartato Amônia-Liase/genética , Dipeptidases/genética , Evolução Molecular Direcionada , Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/metabolismo , Catálise , Dipeptidases/química , Dipeptidases/metabolismo , Estabilidade Enzimática , Biblioteca Gênica , Cinética
18.
J Biochem ; 133(1): 51-8, 2003 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-12761198

RESUMO

We found that a psychrophilic bacterium isolated from Antarctic seawater, Cytophaga sp. KUC-1, abundantly produces aspartase [EC4.3.1.1], and the enzyme was purified to homogeneity. The molecular weight of the enzyme was estimated to be 192,000, and that of the subunit was determined to be 51,000: the enzyme is a homotetramer. L-Aspartate was the exclusive substrate. The optimum pH in the absence and presence of magnesium ions was determined to be pH 7.5 and 8.5, respectively. The enzyme was activated cooperatively by the presence of L-aspartate and by magnesium ions at neutral and alkaline pHs. In the deamination reaction, the K(m) value for L-aspartate was 1.09 mM at pH 7.0, and the S(1/2) value was 2.13 mM at pH 8.5. The V(max) value were 99.2 U/mg at pH 7.0 and 326 U/mg at pH 8.5. In the amination reaction, the K(m) values for fumarate and ammonium were 0.797 and 25.2 mM, respectively, and V(max) was 604 U/mg. The optimum temperature of the enzyme was 55 degrees C. The enzyme showed higher pH and thermal stabilities than that from mesophile: the enzyme was stable in the pH range of 4.5-10.5, and about 80% of its activity remained after incubation at 50 degrees C for 60 min. The gene encoding the enzyme was cloned into Escherichia coli, and its nucleotides were sequenced. The gene consisted of an open reading frame of 1,410-bp encoding a protein of 469 amino acid residues. The amino acid sequence of the enzyme showed a high degree of identity to those of other aspartases, although these enzymes show different thermostabilities.


Assuntos
Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/metabolismo , Cytophaga/enzimologia , Sequência de Aminoácidos , Aminoácidos/análise , Aspartato Amônia-Liase/genética , Dicroísmo Circular , Clonagem Molecular , Temperatura Baixa , Estabilidade Enzimática , Concentração de Íons de Hidrogênio , Cinética , Metais/farmacologia , Dados de Sequência Molecular , Peso Molecular , Subunidades Proteicas , Alinhamento de Sequência , Temperatura
19.
J Mol Biol ; 328(3): 635-54, 2003 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-12706722

RESUMO

The crystal structure of the thermostable aspartase from Bacillus sp. YM55-1 has been solved and refined for 2.5A resolution data with an R-factor of 22.1%. The present enzyme is a homotetramer with subunits composed of three domains. It exhibits no allosteric effects, in contrast to the Escherichia coli aspartase, which is activated by divalent metal cation and L-aspartate, but is four-times more active than the E.coli enzyme. The overall folding of the present enzyme subunit is similar to those of the E.coli aspartase and the E.coli fumarase C, both of which belong to the same superfamily as the present enzyme. A local structural comparison of these three enzymes revealed seven structurally different regions. Five of the regions were located around putative functional sites, suggesting the involvement of these regions into the functions characteristic of the enzymes. Of these regions, the region of Gln96-Gly100 is proposed as a part of the recognition site of the alpha-amino group in L-aspartate for aspartase and the hydroxyl group in L-malate for fumarase. The region of Gln315-Gly323 is a flexible loop with a well-conserved sequence that is suggested to be involved in the catalytic reaction. The region of Lys123-Lys128 corresponds to a part of the putative activator-binding site in the E.coli fumarase C. The region in the Bacillus aspartase, however, adopts a main-chain conformation that prevents the activator binding. The regions of Gly228-Glu241 and Val265-Asp272, which form a part of the active-site wall, are suggested to be involved in the allosteric activation of the E.coli aspartase by the binding of the metal ion and the activator. Moreover, an increase in the numbers of intersubunit hydrogen bonds and salt-bridges is observed in the Bacillus aspartase relative to those of the E.coli enzyme, implying a contribution to the thermostability of the present aspartase.


Assuntos
Aspartato Amônia-Liase/química , Bacillus/enzimologia , Modelos Moleculares , Sítio Alostérico , Sequência de Aminoácidos , Aminoácidos/fisiologia , Aspartato Amônia-Liase/metabolismo , Sítios de Ligação , Sequência Conservada , Cristalografia por Raios X , Estabilidade Enzimática , Escherichia coli/enzimologia , Fumarato Hidratase/química , Dados de Sequência Molecular , Estrutura Terciária de Proteína , Subunidades Proteicas , Alinhamento de Sequência , Relação Estrutura-Atividade , Temperatura
20.
J Biol Chem ; 277(27): 24289-93, 2002 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-11983692

RESUMO

By mimicking the partial spatial structure of the dimer of the l-aspartase subunit, the central ten-helix bundle, and an "active site" between the cleft of domain 1 (D1) and domain 3 (D3) from different subunits, we designed l-aspartase variants, in which D1D2 and D2D3 were ligated with a random hexapeptide loop. As expected, we obtained the variant with the highest activity (relative activity is 21.3% of the native enzyme, named as drAsp017) by in vitro selection. The molecular weight of this variant, obtained from size-exclusion column chromatography, is about 81 kDa, which indicates that it is indeed a monomer, whereas native l-aspartase is a tetramer. The activity-reversibility of drAsp017 (10(-7) m) was 80% after incubation for 30 min at 50 degrees C, while native enzyme only retained about 17% under the same conditions. Reactivation of drAsp017 denatured in 4 m guanidine HCl was independent of protein concentration at up to 20 x 10(-8) m at 25 degrees C, whereas the protein concentration of native enzyme strongly affected its reactivation under the above conditions. The sensitivity of drAsp017 (10(-7) m) to effective factors in the fumarate-amination reaction compared with native enzyme was also determined. Half-saturating concentrations of the activator l-aspartate and Mg2+ for drAsp017 (0.8 and 0.5 mm, respectively) are much higher than that of the native enzyme (0.10 and 0.15 mm, respectively). The data show that a monomeric l-aspartase is obtained by in vitro selection. Thus, the conversion of oligomeric proteins into their functional monomers could have important applications.


Assuntos
Aspartato Amônia-Liase/química , Aspartato Amônia-Liase/metabolismo , Sequência de Aminoácidos , Sítios de Ligação , Primers do DNA , Escherichia coli/enzimologia , Magnésio/metabolismo , Modelos Moleculares , Peso Molecular , Reação em Cadeia da Polimerase , Estrutura Secundária de Proteína , Subunidades Proteicas , Proteínas Recombinantes/química , Mapeamento por Restrição
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