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1.
Int J Mol Sci ; 22(15)2021 Jul 29.
Artigo em Inglês | MEDLINE | ID: mdl-34360927

RESUMO

A 98.1 Kb genomic region from B. pumilus 15.1, a strain isolated as an entomopathogen toward C. capitata, the Mediterranean fruit fly, has been characterised in search of potential virulence factors. The 98.1 Kb region shows a high number of phage-related protein-coding ORFs. Two regions with different phylogenetic origins, one with 28.7 Kb in size, highly conserved in Bacillus strains, and one with 60.2 Kb in size, scarcely found in Bacillus genomes are differentiated. The content of each region is thoroughly characterised using comparative studies. This study demonstrates that these two regions are responsible for the production, after mitomycin induction, of a phage-like particle that packages DNA from the host bacterium and a novel phage for B. pumilus, respectively. Both the phage-like particles and the novel phage are observed and characterised by TEM, and some of their structural proteins are identified by protein fingerprinting. In addition, it is found that the phage-like particle shows bacteriocin activity toward other B. pumilus strains. The effect of the phage-like particles and the phage in the toxicity of the strain toward C. capitata is also evaluated.


Assuntos
Bacillus pumilus , Bacteriocinas/metabolismo , Bacteriófagos , Ceratitis capitata/microbiologia , Fatores de Virulência/metabolismo , Animais , Bacillus pumilus/isolamento & purificação , Bacillus pumilus/patogenicidade , Bacillus pumilus/virologia , Bacteriófagos/patogenicidade , Bacteriófagos/fisiologia
2.
Prep Biochem Biotechnol ; 51(9): 892-900, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33555983

RESUMO

In this study, Li+ biosorption profiles of Micrococcus luteus and Bacillus pumilus bacterial strains were investigated. Comparative surface characterization of the biomasses revealed that B. pumilus had a significantly greater surface negativity than the other, which had a direct positive effect on the ability to attract the Li+ ions. Biosorption experiments showed that B. pumilus cell had more efficient performance at all pH and initial Li+ concentration values in the ranges of 3.0-10.0 and 2.5-20.0 mg/L, respectively. The maximum adsorption capacities obtained at initial Li+ concentration of 20.0 mg/L and pH 9.0 were 1.160 mg Li+/g (167.1 µmol/g) and 2.280 mg Li+/g (328.5 µmol/g) for M. luteus and B. pumilus, respectively. For all the cases studied, the biosorption equilibrium was reached very quickly, suggesting that physical interaction dominated this process. Experimental data were found to be compatible with both Langmuir and Freundlich models under the studied experimental conditions. This study highlights the idea that B. pumilus bacterial strain will be a new and preferred biosorbent for Li+ ions by providing a low cost, rapid and quite efficient process.


Assuntos
Bacillus pumilus , Lítio/metabolismo , Micrococcus luteus , Bacillus pumilus/crescimento & desenvolvimento , Bacillus pumilus/isolamento & purificação , Micrococcus luteus/crescimento & desenvolvimento , Micrococcus luteus/isolamento & purificação
3.
Microbiol Res ; 242: 126616, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-33115624

RESUMO

Rice (Oryza sativa L.) growth and productivity has been negatively affected due to high soil salinity. However, some salt-tolerant plant growth-promoting bacteria (ST-PGPB) enhance crop growth and reduce the negative impacts of salt stress through regulation of some biochemical, physiological, and molecular features. Total thirty six ST-PGPB were isolated from sodic soil of eastern Uttar Pradesh, India, and screened for salt tolerance at different salt (NaCl) concentrations up to 2000 millimolar (mM). Out of thirty-six, thirteen strains indicated better growth and plant growth properties (PGPs) in NaCl amended medium. Among thirteen, one most effective Bacillus pumilus strain JPVS11 was molecularly characterized, which showed potential PGPs, such as indole-3-acetic acid (IAA),1-aminocyclo propane-1-carboxylicacid (ACC) deaminase activity, P-solubilization, proline accumulation and exopolysaccharides (EPS) production at different concentrations of NaCl (0 -1200 mM). Pot experiment was conducted on rice (Variety CSR46) at different NaCl concentrations (0, 50, 100, 200, and 300 mM) with and without inoculation of Bacillus pumilus strain JPVS11. At elevated concentrations of NaCl, the adverse effects on chlorophyll content, carotenoids, antioxidant activity was recorded in non-inoculated (only NaCl) plants. However, inoculation of Bacillus pumilus strain JPVS11 showed positive adaption and improve growth performance of rice as compared to non-inoculated in similar conditions. A significant (P < 0.05) enhancement plant height (12.90-26.48%), root length (9.55-23.09%), chlorophyll content (10.13-27.24%), carotenoids (8.38-25.44%), plant fresh weight (12.33-25.59%), and dry weight (8.66-30.89%) were recorded from 50 to 300 mM NaCl concentration in inoculated plants as compared to non-inoculated. Moreover, the plants inoculated with Bacillus pumilus strain JPVS11showed improvement in antioxidant enzyme activities of catalase (15.14-32.91%) and superoxide dismutase (8.68-26.61%). Besides, the significant improvement in soil enzyme activities, such as alkaline phosphatase (18.37-53.51%), acid phosphatase (28.42-45.99%), urease (14.77-47.84%), and ß-glucosidase (25.21-56.12%) were recorded in inoculated pots as compared to non-inoculated. These results suggest that Bacillus pumilus strain JPVS11 is a potential ST-PGPB for promoting plant growth attributes, soil enzyme activities, microbial counts, and mitigating the deleterious effects of salinity in rice.


Assuntos
Bacillus pumilus/fisiologia , Oryza/crescimento & desenvolvimento , Oryza/microbiologia , Desenvolvimento Vegetal , Estresse Salino/fisiologia , Plantas Tolerantes a Sal/crescimento & desenvolvimento , Plantas Tolerantes a Sal/microbiologia , Solo/química , Antioxidantes , Bacillus pumilus/classificação , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Clorofila , Cianeto de Hidrogênio/metabolismo , Ácidos Indolacéticos , Fixação de Nitrogênio , Fosfatos/metabolismo , Prolina/metabolismo , Salinidade , Tolerância ao Sal/fisiologia , Sementes/microbiologia , Sideróforos/metabolismo , Microbiologia do Solo , Estresse Fisiológico
4.
Mol Biol Rep ; 47(11): 8429-8438, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-33037963

RESUMO

Plant-rhizobacteria interaction and co-evolution developed adaptive strategies which may help the plant survive in nature. Plant rhizosphere soil isolates were analyzed to investigated the effects of rhizobacteria for promoting plant growth and suppress plant disease. Bacterial strains which isolated from plant rhizosphere soil were screened for elicitation of induced systemic resistance (ISR) on tobacco. Strain S2-3-2 results in significant reduction of disease severity on tobacco, it was identified as Bacillus pumilus by multilocus sequence analysis (MLSA). Strain S2-3-2 was deeper studied for pepper plant growth promotion and biological control activity against pepper bacterial spot disease. It was found that the pepper disease severity was decreased when the roots were drenched with strain S2-3-2, and the pepper plants had a higher weight and chlorophyll content, as compared with the mock-treated plants. Transcriptional expression of pathogenesis-related (PR) protein genes in pepper was analyzed by real-time PCR, gene expressions of CaPR1, CaPR4, and CaPR10 were increased when the plants were treated with strain S2-3-2. Moreover, strain S2-3-2 was tested for the production of indole-3-acetic acid (IAA), and it was determined to emit volatiles that enhance the growth of the tobacco plants. Interesting, heat-killed S2-3-2 enhance the pepper root growth, increase the gene expressions of CaPR4 and CaPR10 after pathogen challenge for 6 h, but limited to suppress the pepper bacterial spot disease as compare to the mock-treated plants. Strain S2-3-2 can be a potential biological control agent on the plant root for plant growth promoting and disease suppression.


Assuntos
Bacillus pumilus/isolamento & purificação , Raízes de Plantas/crescimento & desenvolvimento , Rizosfera , Microbiologia do Solo , Bacillus pumilus/genética , Bacillus pumilus/fisiologia , Capsicum/genética , Capsicum/crescimento & desenvolvimento , Capsicum/microbiologia , Resistência à Doença/genética , Regulação da Expressão Gênica de Plantas , Tipagem de Sequências Multilocus/métodos , Doenças das Plantas/genética , Doenças das Plantas/microbiologia , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Raízes de Plantas/genética , Raízes de Plantas/microbiologia , Nicotiana/genética , Nicotiana/crescimento & desenvolvimento , Nicotiana/microbiologia
5.
Pol J Microbiol ; 69(3): 357-365, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-33574865

RESUMO

The capacity of four bacterial strains isolated from productive soil potato fields to solubilize tricalcium phosphate on Pikovskaya agar or in a liquid medium was evaluated. A bacterial strain was selected to evaluate in vitro capacity of plant-growth promotion on Solanum tuberosum L. culture. Bacterial strain A3 showed the highest value of phosphate solubilization, reaching a 20 mm-diameter halo and a concentration of 350 mg/l on agar and in a liquid medium, respectively. Bacterial strain A3 was identified by 16S rDNA analysis as Bacillus pumilus with 98% identity; therefore, it is the first report for Bacillus pumilus as phosphate solubilizer. Plant-growth promotion assayed by in vitro culture of potato microplants showed that the addition of bacterial strain A3 increased root and stems length after 28 days. It significantly increased stem length by 79.3%, and duplicated the fresh weight of control microplants. In this paper, results reported regarding phosphorus solubilization and growth promotion under in vitro conditions represent a step forward in the use of innocuous bacterial strain biofertilizer on potato field cultures.


Assuntos
Bactérias/metabolismo , Fosfatos/metabolismo , Microbiologia do Solo , Solanum tuberosum/crescimento & desenvolvimento , Bacillus pumilus/classificação , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , Bacillus pumilus/metabolismo , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Cinética , Filogenia , Raízes de Plantas/crescimento & desenvolvimento , Caules de Planta/crescimento & desenvolvimento , RNA Ribossômico 16S/genética , Rizosfera , Solanum tuberosum/metabolismo , Sacarose/metabolismo
6.
Probiotics Antimicrob Proteins ; 11(3): 990-998, 2019 09.
Artigo em Inglês | MEDLINE | ID: mdl-30229513

RESUMO

Here we show that Bacillus pumilus ICVB403 recently isolated from copepod eggs is able to produce, after 48-72 h of growth in Landy medium, extracellular inhibitory compounds, which are active against Staphylococcus aureus ATCC 25923, methicillin-resistant S. aureus (MRSA) ATCC 43300, MRSA-S1, Staphylococcus epidermidis 11EMB, Staphylococcus warneri 27EMB, and Staphylococcus hominis 13EMB. Moreover, these extracellular inhibitory compound(s) were able to potentiate erythromycin against the aforementioned staphylococci. The minimum inhibitory concentration (MIC) of erythromycin was reduced from 32 µg/mL to 8 µg/mL for MRSA ATCC 43300 and MRSA SA-1 strains, and from 32-64 µg/mL to 4 µg/mL for S. epidermidis 11EMB and S. hominis 13EMB strains.The genome sequencing and analysis of B. pumilus ICVB403 unveiled 3.666.195 nucleotides contained in 22 contigs with a G + C ratio of 42.0%, 3.826 coding sequences, and 73 RNAs. In silico analysis guided identification of two putative genes coding for synthesis of surfactin A, a lipopeptide with 7 amino acids, and for a circular bacteriocin belonging to the circularin A/uberolysin family, respectively.


Assuntos
Antibacterianos/farmacologia , Bacillus pumilus/química , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , Bacteriocinas/farmacologia , Copépodes/microbiologia , Ovos/microbiologia , Lipopeptídeos/farmacologia , Animais , Antibacterianos/metabolismo , Bacillus pumilus/metabolismo , Bacteriocinas/genética , Bacteriocinas/metabolismo , Genoma Bacteriano , Lipopeptídeos/genética , Lipopeptídeos/metabolismo , Testes de Sensibilidade Microbiana , Análise de Sequência de DNA , Staphylococcus aureus/classificação , Staphylococcus aureus/efeitos dos fármacos , Staphylococcus aureus/crescimento & desenvolvimento
7.
Microbiologyopen ; 8(3): e00663, 2019 03.
Artigo em Inglês | MEDLINE | ID: mdl-30171670

RESUMO

Aflatoxin M1 (AFM1 ) is a potent mycotoxin which causes serious health concerns in developing countries, where it is mainly found in milk, meat, and other foods. Biological detoxification is a promising method for eliminating AFM1 . The aim of this work was to search for AFM1 -degrading bacterial strains from animal waste, soil, and activated sludge. High-performance liquid chromatography and Fourier-transform infrared spectroscopy were used to analyze the AFM1 degradation products. A strain designated E-1-1-1 was obtained from African elephants feces, with the degradation ratio of AFM1 reaching 89.55% in 12 hr. Based on morphology, physiological and biochemical tests, and 16S rRNA gene sequence analysis, strain E-1-1-1 was identified as Bacillus pumilus. The culture supernatant of B. pumilus E-1-1-1 degraded AFM1 effectively, whereas the cells and cell extracts of B. pumilus E-1-1-1 were far less effective. Carbon and nitrogen sources had highly significant effects on the degradation of AFM1 by B. pumilus E-1-1-1. The AFM1 -degrading strain, B. pumilus E1-1-1, could have great potential in industrial applications.


Assuntos
Aflatoxina M1/metabolismo , Bacillus pumilus/metabolismo , Venenos/metabolismo , Animais , Bacillus pumilus/classificação , Bacillus pumilus/isolamento & purificação , Biotransformação , Cromatografia Líquida de Alta Pressão , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Elefantes , Fezes/microbiologia , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Esgotos/microbiologia , Microbiologia do Solo , Espectroscopia de Infravermelho com Transformada de Fourier
8.
World J Microbiol Biotechnol ; 34(2): 21, 2018 Jan 04.
Artigo em Inglês | MEDLINE | ID: mdl-29302801

RESUMO

Public concern for food safety and environmental issues and the increase in fungicide-resistant pathogen have enhanced the interest in developing alternative methods to fungicides to control postharvest fruit decay. In this study, a bacterial strain isolated from stale potato vermicelli was identified as Bacillus pumilus HN-10 based on morphological characteristics and 16S rRNA gene sequence analysis. Furthermore, two novel cationic antifungal peptides named P-1 and P-2 were purified from B. pumilus HN-10 using macroporous adsorbent resin AB-8, Sephadex G-100 chromatography, and reversed-phase high-performance liquid chromatography. The primary structure of P-1 and P-2, which were proved to be novel antifungal peptides by BLAST search in NCBI database, was PLSSPATLNSR and GGSGGGSSGGSIGGR with a molecular weight of 1142.28 and 1149.14 Da, respectively, as indicated by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Both P-1 and P-2 exhibited strong antifungal activity against Trichothecium roseum with minimum inhibitory concentrations starting from 1 µg/mL. The two novel antifungal peptides were stable below 80 °C for 2 h, but lost their activity in 15 min at 121 °C. In addition, they were resistant to the proteolytic action of pepsin, trypsin, and papain, and stable within a wide range of pH (2.0-12.0). These results showed that P-1 and P-2 are novel cationic antifungal peptides with specific activity against T. roseum.


Assuntos
Antifúngicos/isolamento & purificação , Antifúngicos/farmacologia , Peptídeos Catiônicos Antimicrobianos/isolamento & purificação , Peptídeos Catiônicos Antimicrobianos/farmacologia , Ascomicetos/efeitos dos fármacos , Bacillus pumilus/metabolismo , Sequência de Aminoácidos , Antifúngicos/química , Antifúngicos/metabolismo , Peptídeos Catiônicos Antimicrobianos/química , Peptídeos Catiônicos Antimicrobianos/metabolismo , Bacillus pumilus/classificação , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , DNA Bacteriano/genética , Concentração de Íons de Hidrogênio , Testes de Sensibilidade Microbiana , Peso Molecular , Papaína , Pepsina A/metabolismo , Filogenia , Estabilidade Proteica , RNA Ribossômico 16S/genética , Análise de Sequência de Proteína , Solanum tuberosum/microbiologia , Temperatura , Tripsina/metabolismo
9.
Microbiol Res ; 205: 40-47, 2017 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-28942843

RESUMO

Chitinase and surfactin-mediated biocontrol of Rhizoctonia solani and Fusarium oxysporum causing wilt and root rot of Fagopyrum esculentum respectively has been studied in this communication. Bacillus pumilus MSUA3 as a potential bacterial strain strongly inhibited the growth of R. solani and F. oxysporum involving the chitinolytic enzymes and an antibiotic surfactin. Plant growth promoting attributes seem to be involved in plant growth promotion and yield attributes. The action of cell-free culture supernatant (CFCS) was found deleterious to F. oxysporum and R. solani even in the heat-treated (boiled/autoclaved) CFCS. The possible involvement of surfactin in disease control was revealed by colony PCR amplification of SrfA. Chitinolytic enzyme and antibiotic surfactin evidenced differential biocontrol of F. oxysporum and R. solani by B. pumilus MSUA3. A significant reduction in disease index under gnotobiotic conditions and productivity enhancement of F. esculentum using vermiculite-based bioformulation revealed B. pumilus MSUA3 as a successful potential biocontrol agent (BCA) and an efficient plant growth promoting rhizobacterium (PGPR) for disease management and productivity enhancement of buckwheat crop.


Assuntos
Antibiose , Bacillus pumilus/fisiologia , Agentes de Controle Biológico , Fagopyrum/microbiologia , Fusarium/fisiologia , Micoses , Rhizoctonia/fisiologia , Antifúngicos/metabolismo , Bacillus pumilus/classificação , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Quitinases/metabolismo , Fagopyrum/crescimento & desenvolvimento , Fusarium/crescimento & desenvolvimento , Fusarium/patogenicidade , Peptídeo Sintases/genética , Peptídeo Sintases/metabolismo , Filogenia , Desenvolvimento Vegetal , Doenças das Plantas/microbiologia , Doenças das Plantas/prevenção & controle , Raízes de Plantas/microbiologia , Rhizoctonia/crescimento & desenvolvimento , Rhizoctonia/patogenicidade , Microbiologia do Solo , Tensoativos/metabolismo , Tensoativos/farmacologia
11.
Food Microbiol ; 67: 11-16, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28648288

RESUMO

This report provides the first confirmed evidence of Bacillus-like bacteria present in a wine from Washington State. These bacteria were isolated from a 2013 Pinot noir wine whose aroma was sensorially described as being 'dirty' or 'pond scum.' Based on physiological traits and genetic sequencing, three bacterial isolates were identified as Bacillus megaterium (strain NHO-1), Bacillus pumilus (strain NHO-2), and Paenibacillus polymyxa (strain NHO-3). These bacteria grew in synthetic media of low pH (pH 3.5) while some survived ethanol concentrations up to 15% v/v. However, none tolerated molecular SO2 concentrations ≥0.4 mg/l. Growth of strains NHO-1 and NHO-3 in a Merlot grape juice resulted in increases of titratable and volatile acidities while decreases in titratable acidity were noted for NHO-2.


Assuntos
Bacillus megaterium/isolamento & purificação , Bacillus pumilus/isolamento & purificação , Paenibacillus polymyxa/isolamento & purificação , Vinho/microbiologia , Bacillus megaterium/genética , Bacillus megaterium/metabolismo , Bacillus pumilus/genética , Bacillus pumilus/metabolismo , Fermentação , Paenibacillus polymyxa/genética , Paenibacillus polymyxa/metabolismo , Vitis/metabolismo , Vitis/microbiologia , Washington , Vinho/análise
12.
Pestic Biochem Physiol ; 137: 36-41, 2017 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-28364802

RESUMO

The multifaceted role of chitinase in medicine, agriculture, environmental remediation and various other industries greatly demands the isolation of high yielding chitinase producing microorganisms with improved properties. The current study aimed to investigate the isolation, characterization and biocontrol prospective of chitinase producing bacterial strains autochthonous to the extreme conditions of mangrove ecosystems. Among the 51 bacterial isolates screened, Bacillus pumilus MCB-7 with highest chitinase production potential was identified and confirmed by 16S rDNA typing. Chitinase enzyme of MCB-7 was purified; the chitin degradation was evaluated by SEM and LC-MS. Unlike previously reported B.pumilus isolates, MCB-7 exhibited highest chitinase activity of 3.36U/mL, active even at high salt concentrations and temperature up to 60°C. The crude as well as purified enzyme showed significant antimycotic activity against agricultural pathogens such as Aspergillus flavus, Aspergillus niger, Aspergillus fumigatus, Ceratorhiza hydrophila and Fusarium oxysporum. The enzyme also exhibited biopesticidal role against larvae of Scirpophaga incertulas (Walker). [Lep.: Pyralidae], a serious agricultural pest of rice. The high chitinolytic and antimycotic potential of MCB-7 increases the prospects of the isolate as an excellent biocontrol agent. To the best of our knowledge, this is the first report of high chitinase yielding Bacillus pumilus strain from mangrove ecosystem with a biocontrol role against phytopathogenic fungi and insect larval pests.


Assuntos
Bacillus pumilus/metabolismo , Agentes de Controle Biológico/farmacologia , Quitinases/farmacologia , Fungicidas Industriais/farmacologia , Mariposas/efeitos dos fármacos , Áreas Alagadas , Animais , Bacillus pumilus/isolamento & purificação , Agentes de Controle Biológico/isolamento & purificação , Quitinases/biossíntese , Quitinases/isolamento & purificação , Transmissão de Doença Infecciosa/prevenção & controle , Fungicidas Industriais/isolamento & purificação , Mariposas/patogenicidade , RNA Ribossômico 16S/genética , Microbiologia do Solo
13.
Food Sci Technol Int ; 23(1): 17-23, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-27235993

RESUMO

To increase the shelf life of edible insects, modern techniques (e.g. freeze-drying) add to the traditional methods (degutting, boiling, sun-drying or roasting). However, microorganisms become inactivated rather than being killed, and when rehydrated, many return to vegetative stadia. Crickets (Gryllus bimaculatus) and superworms (Zophobas atratus) were submitted to four different drying techniques (T1 = 10' cooking, 24 h drying at 60℃; T2 = 10' cooking, 24 h drying at 80℃; T3 = 30' cooking, 12 h drying at 80℃, and 12 h drying at 100℃; T4 = boiling T3-treated insects after five days) and analysed for total bacteria counts, Enterobacteriaceae, staphylococci, bacilli, yeasts and moulds counts, E. coli, salmonellae, and Listeria monocytogenes (the latter three being negative throughout). The microbial counts varied strongly displaying species- and treatment-specific patterns. T3 was the most effective of the drying treatments tested to decrease all counts but bacilli, for which T2 was more efficient. Still, total bacteria counts remained high (G. bimaculatus > Z. atratus). Other opportunistically pathogenic microorganisms (Bacillus thuringiensis, B. licheniformis, B. pumilis, Pseudomonas aeruginosa, and Cryptococcus neoformans) were also encountered. The tyndallisation-like T4 reduced all counts to below detection limit, but nutrients leakage should be considered regarding food quality. In conclusion, species-specific drying procedures should be devised to ensure food safety.


Assuntos
Contaminação de Alimentos/prevenção & controle , Manipulação de Alimentos , Microbiologia de Alimentos , Gryllidae/microbiologia , Temperatura Alta , Hiperfagia/microbiologia , Animais , Bacillus licheniformis/isolamento & purificação , Bacillus pumilus/isolamento & purificação , Bacillus thuringiensis/isolamento & purificação , Contagem de Colônia Microbiana , Qualidade de Produtos para o Consumidor , Cryptococcus neoformans/isolamento & purificação , Dessecação , Escherichia coli/isolamento & purificação , Inocuidade dos Alimentos , Limite de Detecção , Listeria monocytogenes/isolamento & purificação , Pseudomonas aeruginosa/isolamento & purificação , Salmonella/isolamento & purificação
14.
Mol Phylogenet Evol ; 107: 443-454, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-27956257

RESUMO

The study involves isolation of arsenic resistant bacteria from soil samples. The characterization of bacteria isolates was based on 16S rRNA gene sequences. The phylogenetic consanguinity among isolates was studied employing rpoB and gltX gene sequence. RAPD-PCR technique was used to analyze genetic similarity between arsenic resistant isolates. In accordance with the results Bacillus subtilis and Bacillus pumilus strains may exhibit extensive horizontal gene transfer. Arsenic resistant potency in Bacillus sonorensis and high arsenite tolerance in Bacillus pumilus strains was identified. The RAPD-PCR primer OPO-02 amplified a 0.5kb DNA band specific to B. pumilus 3ZZZ strain and 0.75kb DNA band specific to B. subtilis 3PP. These unique DNA bands may have potential use as SCAR (Sequenced Characterized Amplified Region) molecular markers for identification of arsenic resistant B. pumilus and B. subtilis strains.


Assuntos
Arsênio/toxicidade , Bacillus pumilus/efeitos dos fármacos , Bacillus pumilus/genética , Bacillus subtilis/efeitos dos fármacos , Bacillus subtilis/genética , Reação em Cadeia da Polimerase/métodos , Técnica de Amplificação ao Acaso de DNA Polimórfico/métodos , Bacillus pumilus/isolamento & purificação , Bacillus subtilis/isolamento & purificação , Evolução Molecular , Genes Bacterianos , Concentração de Íons de Hidrogênio , Funções Verossimilhança , Filogenia , Solo
15.
J Environ Sci Health B ; 51(12): 868-872, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27715467

RESUMO

Wastewater-algal biomass is a promising option to biofuel production. However, microbial contaminants constitute a substantial barrier to algal biofuel yield. A series of algal strains, Nannochloris oculata and Chlorella vulgaris samples (n = 30), were purchased from the University of Texas, and were used for both stock flask cultures and flat-panel vertical bioreactors. A number of media were used for isolation and differentiation of potential contaminants according to laboratory standards (CLSI). Conventional PCR amplification was performed followed by 16S rDNA sequencing to identify isolates at the species level. Nanotherapeutics involving a nanomicellar combination of natural chitosan and zinc oxide (CZNPs) were tested against the microbial lytic groups through Minimum Inhibitory Concentration (MIC) tests and Transmission Electronic Microscopy (TEM). Results indicated the presence of Pseudomonas spp., Bacillus pumilus/ safensis, Cellulosimicrobium cellulans, Micrococcus luteus and Staphylococcus epidermidis strains at a substantial level in the wastewater-fed algal reactors. TEM confirmed the effectiveness of CZNPs on the lytic group while the average MICs (mg/mL) detected for the strains, Pseudomonas spp, Micrococcus luteus, and Bacillus pumilus were 0.417, 3.33, and 1.458, respectively. Conclusively, CZNP antimicrobials proved to be effective as inhibitory agents against currently identified lytic microbial group, did not impact algae cells, and shows promise for in situ interventions.


Assuntos
Biotecnologia/instrumentação , Quitosana/farmacologia , Águas Residuárias/microbiologia , Óxido de Zinco/farmacologia , Bacillus pumilus/efeitos dos fármacos , Bacillus pumilus/isolamento & purificação , Biocombustíveis , Biomassa , Reatores Biológicos/microbiologia , Biotecnologia/métodos , Chlorella vulgaris , Clorófitas , Testes de Sensibilidade Microbiana , Micrococcus luteus/efeitos dos fármacos , Micrococcus luteus/isolamento & purificação , Nanotecnologia/instrumentação , Nanotecnologia/métodos , Pseudomonas/efeitos dos fármacos , Pseudomonas/isolamento & purificação , Staphylococcus epidermidis/efeitos dos fármacos , Staphylococcus epidermidis/isolamento & purificação
16.
Arch Virol ; 161(12): 3597-3600, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27619796

RESUMO

Tailed phages with genomes larger than 200 kbp are classified as jumbo phage and exhibit extremely high diversity. In this study, a novel jumbo phage, vB_BpuM_BpSp, infecting pathogenic Bacillus pumilus, the cause of ginger rhizome rot disease, was isolated. Notable features of phage vB_BpuM_BpSp are the large phage capsid of 137 nm and baseplate-attached curly tail fibers. The genome of the phage is 255,569 bp in size with G+C content of 25.9 %, and it shows low similarity to known biological entities. The phage genome contains 318 predicted coding sequences. Among these predicted coding sequences, 26 genes responsible for nucleotide metabolism were found, and seven structural genes could be identified. The findings of this study provide new understanding of the genetic diversity of phages.


Assuntos
Fagos Bacilares/genética , Fagos Bacilares/isolamento & purificação , Bacillus pumilus/virologia , DNA Viral/genética , Genoma Viral , Análise de Sequência de DNA , Fagos Bacilares/classificação , Fagos Bacilares/ultraestrutura , Bacillus pumilus/isolamento & purificação , Composição de Bases , Capsídeo/ultraestrutura , Ordem dos Genes , Zingiber officinale/microbiologia , Microscopia Eletrônica de Transmissão , Fases de Leitura Aberta , Doenças das Plantas/microbiologia , Rizoma/microbiologia , Homologia de Sequência de Aminoácidos
17.
J Gen Appl Microbiol ; 62(4): 181-8, 2016 Sep 12.
Artigo em Inglês | MEDLINE | ID: mdl-27373509

RESUMO

The potential of microbial ribonucleases as promising antitumor and antiviral agents, determines today's directions of their study. One direction is connected with biodiversity of RNases. We have analyzed completed and drafted Bacillus genomes deposited in GenBank for the presence of coding regions similar to the gene of an extracellular guanyl-preferring RNase of Bacillus amyloliquefaciens (barnase). Orthologues of the barnase gene were detected in 9 species out of 83. All of these belong to "B. subtilis" group within the genus. B. subtilis itself, as well as some other species within this group, lack such types of RNases. RNases similar to barnase were also found in species of "B. cereus" group as a part of plasmid-encoded S-layer toxins. It was also found that taxonomic states of culture collection strains, which were initially described based on a limited set of phenotypic characteristics, can be misleading and need to be confirmed. Using several approaches such as matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS), sequencing of genes for 16S ribosomal RNA and RNA polymerase subunit beta followed by reconstruction of phylogenetic trees, we have re-identified two RNase-secreting Bacillus strains: B. thuringiensis B-388 which should be assigned as B. altitudinis B388 and B. intermedius 7P which should be renamed as B. pumilus 7P. Therefore, small secreted guanyl-preferring RNases are the feature of "B. subtilis" group only, which is characterized by distinctive lifestyle and adaptation strategies to environment.


Assuntos
Bacillus amyloliquefaciens/genética , Bacillus/classificação , Guanina/metabolismo , Filogenia , Ribonucleases/genética , Sequência de Aminoácidos , Bacillus/enzimologia , Bacillus/genética , Bacillus amyloliquefaciens/enzimologia , Bacillus pumilus/enzimologia , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , Bacillus thuringiensis/enzimologia , Bacillus thuringiensis/genética , Bacillus thuringiensis/isolamento & purificação , Proteínas de Bactérias , Sequência de Bases , Classificação/métodos , DNA Bacteriano , Genoma Bacteriano , RNA Ribossômico 16S , Ribonucleases/classificação , Ribonucleases/metabolismo , Análise de Sequência de DNA , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz/métodos
18.
Genet Mol Res ; 15(2)2016 May 13.
Artigo em Inglês | MEDLINE | ID: mdl-27323038

RESUMO

In this paper, a plate confrontation method was used to isolate bacteria antagonistic to the rice blast fungus Magnaporthe grisea from samples collected from China's Dalian Bay. The antagonist strain LM-031 was obtained. We studied this strain's morphological, physiological and biochemical characteristics and analyzed its 16S rDNA sequence. We compared the effects of different culture conditions (type of media, carbon and nitrogen source, incubation temperature and time, and initial pH value) on the inhibitory effect against M. grisea. Strain LM-031 was preliminarily identified as Bacillus pumilus and was found to strongly inhibit M. grisea, especially when grown on BPY medium at an initial pH 7 for 72 h at 30°C. The optimum carbon and nitrogen sources for growth were lactose and peptone, respectively. The most suitable carbon and nitrogen sources for production of active substances were glucose and NH4Cl, respectively. Our results show that development and utilization of B. pumilus LM-031 has great potential for biological control of M. grisea.


Assuntos
Bacillus pumilus/isolamento & purificação , Bacillus pumilus/fisiologia , Magnaporthe/fisiologia , Doenças das Plantas/microbiologia , Doenças das Plantas/terapia , Bacillus pumilus/genética , Bacillus pumilus/metabolismo , China , DNA Ribossômico/genética , Oryza , Água do Mar/microbiologia
19.
J Basic Microbiol ; 56(9): 999-1008, 2016 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-27106067

RESUMO

Bacillus pumilus MTCC7615, a biocontrol agent isolated from rice rhizosphere was characterized to be antagonistic to Rhizoctonia solani, the pathogen causing sheath blight disease of rice. The phenazine-1-carboxylic acid gene (phc CD) of this bacterium was PCR amplified (1400 bp), cloned, and sequenced. The sequence analysis revealed the presence of two ORFs of phc CD gene commonly found in Pseudomonas species. The sequence showed 98% similarity to phc CD gene of the Pseudomonas isolate LBUM223 (DQ788993). The crude antibiotic extract from B. pumilus MTCC7615 was observed to inhibit mycelial growth of R. solani under in vitro conditions. The HPLC analysis of crude antibiotic extract from B. pumilus MTCC7615 confirmed the presence of phenazine. The study has also reported the presence of phc CD gene which is responsible for the synthesis of phenazine-1-carboxylic acid in B. pumilus. The ability of the bacterial isolate to control sheath blight disease in rice seedlings under in vivo conditions was confirmed by the pot culture experiment. The structural and functional genomics of phc C and phc D genes would lead to a better understanding of phenazine biosynthesis in B. pumilus for its efficient utilization in plant protection strategies.


Assuntos
Antibiose , Bacillus pumilus/genética , Bacillus pumilus/patogenicidade , Agentes de Controle Biológico , Controle Biológico de Vetores , Rhizoctonia/crescimento & desenvolvimento , Bacillus pumilus/isolamento & purificação , Sequência de Bases , DNA Bacteriano/genética , Micélio/crescimento & desenvolvimento , Fases de Leitura Aberta/genética , Oryza/microbiologia , Fenazinas/metabolismo , Doenças das Plantas/microbiologia , Reação em Cadeia da Polimerase , Rizosfera , Análise de Sequência de DNA
20.
Pak J Biol Sci ; 19(5): 191-201, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-29023023

RESUMO

BACKGROUND: Escherichia coli is one of the most common pathogenic bacteria, which cause urinary tract infections in infants as well as in adult human beings. Due to the emergence of antibiotic resistance in E. coli, there is a great demand of new antimicrobial agent for the treatment of infections caused by such E. coli. This study aims to isolate, identify and characterize the native soil-bacterial strains predominate in the soil of Unaizah city, which produce antimicrobial agent antagonistic to E. coli ATCC 10536, followed by isolation, purification and characterization of antimicrobial agent. MATERIALS AND METHODS: Pour plate, spread plate and 16S rRNA sequence analysis methods were followed for the isolation and identification of soil bacteria. Ammonium sulphate and dialysis (MWCO-8 KD) methods were followed for the isolation and partial purification of antimicrobial agent from the cell free broths. The characterization of antimicrobial agent was carried out by determining the minimum inhibitory concentration and effects of temperature and pH on the antimicrobial stability. RESULTS: Out of the twenty five soil samples, only one soil-bacterial strain was found to produce antimicrobial agent antagonistic to E. coli ATCC 10536. The isolated soil bacterium was identified as Bacillus pumilus SAFR-032. The soil isolate was characterized and results suggest that 30°C temperature and pH 7.0 were the optimum growth parameters and soybean casein digest broth was the best fermentation medium, whereas the highest production of antimicrobial agent was at 35°C temperature, pH 7.0, shaking at 150-220 rpm and at 60th h of incubation. The maximum yield of antimicrobial agent was obtained at 60% of (NH 4) 2SO 4. The results of characterization of antimicrobial agent suggest that the maximum and minimum antimicrobial activities were at pH 3.0 and 8.0, respectively, whereas antimicrobial activity was unaffected by temperature. The antimicrobial agent was highly stable at varying range of temperature 50-120°C. Minimum inhibitory concentration of antimicrobial agent was found to be 64 µg mL -1. CONCLUSION: In conclusion, this study might be a great endeavor for the healthcare industry in order to treatment of different infections caused by E. coli and that warrants further investigations to fully standardized and establish the antimicrobial profile of effect(s) of this isolate.


Assuntos
Anti-Infecciosos/farmacologia , Bacillus pumilus/metabolismo , Escherichia coli/efeitos dos fármacos , Microbiologia do Solo , Anti-Infecciosos/isolamento & purificação , Anti-Infecciosos/metabolismo , Bacillus pumilus/classificação , Bacillus pumilus/genética , Bacillus pumilus/isolamento & purificação , Estabilidade de Medicamentos , Escherichia coli/crescimento & desenvolvimento , Concentração de Íons de Hidrogênio , Testes de Sensibilidade Microbiana , Arábia Saudita , Temperatura
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