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1.
J Appl Microbiol ; 134(8)2023 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-37580171

RESUMO

AIMS: To provide an alternative to ultra violet light and vapourized hydrogen peroxide to enhance decontamination of surfaces as part of the response to the COVID-19 pandemic. METHODS AND RESULTS: We developed an indirect method for in situ delivery of cold plasma and evaluated the anti-viral activity of plasma-activated mist (PAM) using bacteriophages phi6, MS2, and phiX174, surrogates for SARS-CoV-2. Exposure to ambient air atmospheric pressure derived PAM caused a 1.71 log10 PFU ml-1 reduction in phi6 titer within 5 min and a 7.4 log10 PFU ml-1 reduction after 10 min when the the PAM source was at 5 and 10 cm. With MS2 and phiX174, a 3.1 and 1.26 log10 PFU ml-1 reduction was achieved, respectively, after 30 min. The rate of killing was increased with longer exposure times but decreased when the PAM source was further away. Trace amounts of reactive species, hydrogen peroxide and nitrite were produced in the PAM, and the anti-viral activity was probably attributable to these and their secondary reactive species. CONCLUSIONS: PAM exhibits virucidal activity against surrogate viruses for COVID-19, which is time and distance from the plasma source dependent.


Assuntos
Bacteriófagos , Desinfecção , Peróxido de Hidrogênio , Nitritos , Gases em Plasma , Bacteriófagos/efeitos dos fármacos , Bacteriófagos/fisiologia , COVID-19/virologia , Desinfetantes/química , Desinfecção/métodos , Peróxido de Hidrogênio/farmacologia , Nitritos/farmacologia , Gases em Plasma/farmacologia , Espécies Reativas de Nitrogênio/análise , Espécies Reativas de Oxigênio/análise , SARS-CoV-2/fisiologia , Água/química , Microbiologia do Ar
2.
ACS Appl Mater Interfaces ; 13(41): 48469-48477, 2021 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-34623127

RESUMO

The COVID-19 pandemic highlighted the importance of developing surfaces and coatings with antiviral activity. Here, we present, for the first time, peptide-based assemblies that can kill viruses. The minimal inhibitory concentration (MIC) of the assemblies is in the range tens of micrograms per milliliter. This value is 2 orders of magnitude smaller than the MIC of metal nanoparticles. When applied on a surface, by drop casting, the peptide spherical assemblies adhere to the surface and form an antiviral coating against both RNA- and DNA-based viruses including coronavirus. Our results show that the coating reduced the number of T4 bacteriophages (DNA-based virus) by 3 log, compared with an untreated surface and 6 log, when compared with a stock solution. Importantly, we showed that this coating completely inactivated canine coronavirus (RNA-based virus). This peptide-based coating can be useful wherever sterile surfaces are needed to reduce the risk of viral transmission.


Assuntos
Antivirais/química , Peptídeos/química , Animais , Antivirais/farmacologia , Antivirais/uso terapêutico , Bacteriófagos/efeitos dos fármacos , COVID-19/virologia , Coronavirus/efeitos dos fármacos , Coronavirus/isolamento & purificação , Infecções por Coronavirus/tratamento farmacológico , Infecções por Coronavirus/virologia , Di-Hidroxifenilalanina/química , Doenças do Cão/tratamento farmacológico , Doenças do Cão/virologia , Cães , Humanos , Nanopartículas Metálicas/química , Peptídeos/farmacologia , Peptídeos/uso terapêutico , SARS-CoV-2/isolamento & purificação , Inativação de Vírus/efeitos dos fármacos , Tratamento Farmacológico da COVID-19
3.
Viruses ; 13(5)2021 05 10.
Artigo em Inglês | MEDLINE | ID: mdl-34068736

RESUMO

Deoxyuridine in DNA has recently been in the focus of research due to its intriguing roles in several physiological and pathophysiological situations. Although not an orthodox DNA base, uracil may appear in DNA via either cytosine deamination or thymine-replacing incorporations. Since these alterations may induce mutation or may perturb DNA-protein interactions, free living organisms from bacteria to human contain several pathways to counteract uracilation. These efficient and highly specific repair routes uracil-directed excision repair initiated by representative of uracil-DNA glycosylase families. Interestingly, some bacteriophages exist with thymine-lacking uracil-DNA genome. A detailed understanding of the strategy by which such phages can replicate in bacteria where an efficient repair pathway functions for uracil-excision from DNA is expected to reveal novel inhibitors that can also be used for biotechnological applications. Here, we also review the several potential biotechnological applications already implemented based on inhibitors of uracil-excision repair, such as Crispr-base-editing and detection of nascent uracil distribution pattern in complex genomes.


Assuntos
DNA Viral/química , DNA Viral/genética , Uracila , Vírus/genética , Bacteriófagos/efeitos dos fármacos , Bacteriófagos/genética , Bacteriófagos/metabolismo , Biotecnologia , DNA Viral/metabolismo , Desenvolvimento de Medicamentos , Humanos , Modelos Moleculares , Ácidos Nucleicos/química , Ácidos Nucleicos/metabolismo , Conformação Proteica , Relação Estrutura-Atividade , Uracila/química , Uracila-DNA Glicosidase/química , Uracila-DNA Glicosidase/metabolismo , Vírus/efeitos dos fármacos , Vírus/metabolismo
4.
J Hosp Infect ; 112: 108-113, 2021 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-33864891

RESUMO

BACKGROUND: The presence of coronaviruses on surfaces in the patient environment is a potential source of indirect transmission. Manual cleaning and disinfection measures do not always achieve sufficient removal of surface contamination. This increases the importance of automated solutions in the context of final disinfection of rooms in the hospital setting. Ozone is a highly effective disinfectant which, combined with high humidity, is an effective agent against respiratory viruses. Current devices allow continuous nebulization for high room humidity as well as ozone production without any consumables. AIM: In the following study, the effectiveness of a fully automatic room decontamination system based on ozone was tested against bacteriophage Φ6 (phi 6) and bovine coronavirus L9, as surrogate viruses for the pandemic coronavirus SARS-CoV-2. METHODS: For this purpose, various surfaces (ceramic tile, stainless steel surface and furniture board) were soiled with the surrogate viruses and placed at two different levels in a gas-tight test room. After using the automatic decontamination device according to the manufacturer's instructions, the surrogate viruses were recovered from the surfaces and examined by quantitative cultures. Then, reduction factors were calculated. FINDINGS: The ozone-based room decontamination device achieved virucidal efficacy (reduction factor >4 log10) against both surrogate organisms regardless of the different surfaces and positions confirming a high activity under the used conditions. CONCLUSION: Ozone is highly active against SARS-CoV-2 surrogate organisms. Further investigations are necessary for a safe application and efficacy in practice as well as integration into routine processes.


Assuntos
Automação/instrumentação , COVID-19/prevenção & controle , Desinfetantes/farmacologia , Desinfecção/instrumentação , Desinfecção/métodos , Ozônio/farmacologia , Animais , Bacteriófagos/efeitos dos fármacos , COVID-19/transmissão , Bovinos , Coronavirus Bovino/efeitos dos fármacos , Infecção Hospitalar/prevenção & controle , Infecção Hospitalar/virologia , Descontaminação/instrumentação , Descontaminação/métodos , Equipamentos e Provisões Hospitalares/virologia , Hospitais , Humanos , SARS-CoV-2/efeitos dos fármacos
5.
Viruses ; 13(3)2021 03 23.
Artigo em Inglês | MEDLINE | ID: mdl-33807067

RESUMO

Effective broad-spectrum antiviral treatments are in dire need as disinfectants and therapeutic alternatives. One such method of disinfection is photodynamic inactivation, which involves the production of reactive oxygen species from dissolved oxygen in response to light-stimulated photosensitizers. This study evaluated the efficacy of functionalized porphyrin compounds for photodynamic inactivation of bacteriophages as human virus surrogates. A blue-light light emitting diode (LED) lamp was used to activate porphyrin compounds in aqueous solution (phosphate buffer). The DNA bacteriophages ΦX174 and P22 were more resistant to porphyrin TMPyP photodynamic inactivation than RNA bacteriophage fr, with increasing rates of inactivation in the order: ΦX174 << P22 << fr. Bacteriophage ΦX174 was therefore considered a resistant virus suitable for the evaluation of three additional porphyrins. These porphyrins were synthesized from TMPyP by inclusion of a central palladium ion (PdT4) and/or the addition of a hydrophobic C14 chain (PdC14 or C14). While the inactivation rate of bacteriophage ΦX174 via TMPyP was similar to previous reports of resistant viruses, ΦX174 inactivation increased by a factor of approximately 2.5 using the metalloporphyrins PdT4 and PdC14. The order of porphyrin effectiveness was TMPyP < C14 < PdT4 < PdC14, indicating that both Pd2+ ligation and C14 functionalization aided virus inactivation.


Assuntos
Bacteriófagos/efeitos dos fármacos , Desinfecção/métodos , Fármacos Fotossensibilizantes/farmacologia , Porfirinas/química , Inativação de Vírus
6.
Viruses ; 13(3)2021 03 11.
Artigo em Inglês | MEDLINE | ID: mdl-33799646

RESUMO

Many bacteria carry bacteriophages (bacterial viruses) integrated in their genomes in the form of prophages, which replicate passively alongside their bacterial host. Environmental conditions can lead to prophage induction; the switching from prophage replication to lytic replication, that results in new bacteriophage progeny and the lysis of the bacterial host. Despite their abundance in the gut, little is known about what could be inducing these prophages. We show that several medications, at concentrations predicted in the gut, lead to prophage induction of bacterial isolates from the human gut. We tested five medication classes (non-steroidal anti-inflammatory, chemotherapy, mild analgesic, cardiac, and antibiotic) for antimicrobial activity against eight prophage-carrying human gut bacterial representative isolates in vitro. Seven out of eight bacteria showed signs of growth inhibition in response to at least one medication. All medications led to growth inhibition of at least one bacterial isolate. Prophage induction was confirmed in half of the treatments showing antimicrobial activity. Unlike antibiotics, host-targeted medications led to a species-specific induction of Clostridium beijerinckii, Bacteroides caccae, and to a lesser extent Bacteroides eggerthii. These results show how common medication consumption can lead to phage-mediated effects, which in turn would alter the human gut microbiome through increased prophage induction.


Assuntos
Bactérias/crescimento & desenvolvimento , Bactérias/virologia , Bacteriófagos/crescimento & desenvolvimento , Lisogenia/efeitos dos fármacos , Preparações Farmacêuticas/administração & dosagem , Ativação Viral/efeitos dos fármacos , Bactérias/efeitos dos fármacos , Bactérias/genética , Bacteriófagos/efeitos dos fármacos , Microbioma Gastrointestinal/efeitos dos fármacos , Humanos
7.
Gut Microbes ; 13(1): 1-19, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33779498

RESUMO

Oral antibiotics are commonly prescribed to non-hospitalized adults. However, antibiotic-induced changes in the human gut microbiome are often investigated in cohorts with preexisting health conditions and/or concomitant medication, leaving the effects of antibiotics not completely understood. We used a combination of omic approaches to comprehensively assess the effects of antibiotics on the gut microbiota and particularly the gut resistome of a small cohort of healthy adults. We observed that 3 to 19 species per individual proliferated during antibiotic treatment and Gram-negative species expanded significantly in relative abundance. While the overall relative abundance of antibiotic resistance gene homologs did not significantly change, antibiotic-specific gene homologs with presumed resistance toward the administered antibiotics were common in proliferating species and significantly increased in relative abundance. Virome sequencing and plasmid analysis showed an expansion of antibiotic-specific resistance gene homologs even 3 months after antibiotic administration, while paired-end read analysis suggested their dissemination among different species. These results suggest that antibiotic treatment can lead to a persistent expansion of antibiotic resistance genes in the human gut microbiota and provide further data in support of good antibiotic stewardship.Abbreviation: ARG - Antibiotic resistance gene homolog; AsRG - Antibiotic-specific resistance gene homolog; AZY - Azithromycin; CFX - Cefuroxime; CIP - Ciprofloxacin; DOX - Doxycycline; FDR - False discovery rate; GRiD - Growth rate index value; HGT - Horizontal gene transfer; NMDS - Non-metric multidimensional scaling; qPCR - Quantitative polymerase chain reaction; RPM - Reads per million mapped reads; TA - Transcriptional activity; TE - Transposable element; TPM - Transcripts per million mapped reads.


Assuntos
Antibacterianos/uso terapêutico , Resistência Microbiana a Medicamentos , Fezes/microbiologia , Fezes/virologia , Microbioma Gastrointestinal/efeitos dos fármacos , Microbiota/efeitos dos fármacos , Adolescente , Adulto , Idoso , Bactérias/virologia , Bacteriófagos/efeitos dos fármacos , Guerra Biológica , Estudos de Coortes , Transferência Genética Horizontal/efeitos dos fármacos , Humanos , Metagenoma/efeitos dos fármacos , Pessoa de Meia-Idade , Plasmídeos/efeitos dos fármacos , Transcriptoma/efeitos dos fármacos , Viroma/efeitos dos fármacos , Adulto Jovem
8.
Nanotechnology ; 32(20): 205102, 2021 May 14.
Artigo em Inglês | MEDLINE | ID: mdl-33561842

RESUMO

This study explored the application of colloidal and immobilized silver nanoparticles (AgNPs) for inactivation of bacteriophages. Coliphages that are commonly used as indicators for enteric viruses, were used in this study. Colloidal AgNPs were synthesized via a chemical reduction approach using sodium borohydride as reducing agent and trisodium citrate as stabilizing agent. AgNP-immobilized glass substrate was prepared by immobilizing AgNPs on amine-functionalized glass substrate by post-immobilization method. The AgNP-immobilized glass substrate was also tested so as to minimize the release of AgNPs in the treated water. The characterization of AgNPs and the AgNP-immobilized glass surface was done using field emission gun-transmission electron microscopy and scanning electron microscopy. Studies conducted with varying concentrations of colloidal AgNPs displayed good antiviral activity for MS2 and T4 bacteriophage. Colloidal AgNPs at a dose of 60 µg ml-1 could completely inactivate MS2 and T4 bacteriophage within 30 and 50 min with an initial concentration of 103 PFU ml-1. Contaminated water (100 ml) in an unstirred batch reactor with an initial bacteriophage concentration of 103 PFU ml-1 could be inactivated by the AgNP-immobilized glass substrate (1 cm × 1 cm, containing 3.7 µg cm-2 silver) suspended centrally in the batch reactor. Complete 3-Log bacteriophage inactivation was achieved within 70 and 80 min for MS2 and T4 bacteriophage, respectively, while the aqueous silver concentration was less than 25 µg l-1. This is significantly lower than the recommended standard for silver in drinking water (i.e. 100 µg l-1, US EPA). Thus, AgNP-immobilized glass may have good potential for generating virus-free drinking water.


Assuntos
Antivirais , Nanopartículas Metálicas/química , Prata , Antivirais/química , Antivirais/farmacologia , Bacteriófagos/efeitos dos fármacos , Reatores Biológicos/microbiologia , Reatores Biológicos/virologia , Escherichia coli/virologia , Prata/química , Prata/farmacologia , Propriedades de Superfície
9.
Int J Mol Sci ; 22(4)2021 Feb 09.
Artigo em Inglês | MEDLINE | ID: mdl-33572073

RESUMO

The purpose of the study was to obtain an external coating based on nanoparticles of ZnO, carvacrol, and geraniol that could be active against viruses such as SARS-Co-V2. Additionally, the synergistic effect of the chosen substances in coatings was analyzed. The goal of the study was to measure the possible antibacterial activity of the coatings obtained. Testing antiviral activity with human pathogen viruses, such as SARS-Co-V2, requires immense safety measures. Bacteriophages such as phi 6 phage represent good surrogates for the study of airborne viruses. The results of the study indicated that the ZC1 and ZG1 coatings containing an increased amount of geraniol or carvacrol and a very small amount of nanoZnO were found to be active against Gram-positive and Gram-negative bacteria. It is also important that a synergistic effect between these active substances was noted. This explains why polyethylene (PE) films covered with the ZC1 or ZG1 coatings (as internal coatings) were found to be the best packaging materials to extend the quality and freshness of food products. The same coatings may be used as the external coatings with antiviral properties. The ZC1 and ZG1 coatings showed moderate activity against the phi 6 phage that has been selected as a surrogate for viruses such as coronaviruses. It can be assumed that coatings ZG1 and ZC1 will also be active against SARS-CoV-2 that is transmitted via respiratory droplets.


Assuntos
Monoterpenos Acíclicos/química , Antibacterianos/química , Antivirais/química , Cimenos/química , Nanopartículas Metálicas/química , Óxido de Zinco/química , Antibacterianos/farmacologia , Antivirais/farmacologia , Bacteriófagos/efeitos dos fármacos , COVID-19/patologia , COVID-19/virologia , Portadores de Fármacos/química , Bactérias Gram-Negativas/efeitos dos fármacos , Bactérias Gram-Positivas , SARS-CoV-2/efeitos dos fármacos , SARS-CoV-2/isolamento & purificação
10.
Ecotoxicol Environ Saf ; 207: 111310, 2021 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-32937228

RESUMO

Antibiotic resistance genes (ARGs) in mariculture sediments pose a potential risk to public health due to their ability to transfer from environmental bacteria to human pathogens. Long term, this may reduce pathogen susceptibility to antibiotics in medical settings. In recent years, the poly-culture of multiple species has become a popular mariculture approach in China, thanks to its environmental and economic benefits. However, differences in microbial communities and antibiotic resistome between mono- and poly-culture systems are still unclear. In this study, microbial community composition and profiles of entire (microbial DNA) and mobile (plasmid and phage) ARGs in prawn mono- and poly-culture systems were investigated using metagenomics. The abundance of several viruses and human pathogens were enhanced in prawn poly-culture ponds, when compared to monoculture systems. In contrast, sediments from poly-culture systems had a lower diversity and ARG abundance when compared to mono-culture approaches. These ARG variations were predominantly related to mobile genetic elements. Prawn mariculture activities exerted a unique selectivity for ARGs in plasmids, and this selectivity was not influenced by culture methods. The findings of this study have important implications for the selection of mariculture systems in preventing pollution with ARGs.


Assuntos
Aquicultura , Resistência Microbiana a Medicamentos/genética , Microbiota/fisiologia , Bactérias/efeitos dos fármacos , Bacteriófagos/efeitos dos fármacos , Bacteriófagos/genética , China , Cultura , Genes Bacterianos/efeitos dos fármacos , Humanos , Metagenômica , Microbiota/efeitos dos fármacos
11.
Ann N Y Acad Sci ; 1496(1): 23-34, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-33175408

RESUMO

Antibiotic resistance has reached dangerously high levels throughout the world. A growing number of bacteria pose an urgent, serious, and concerning threat to public health. Few new antibiotics are available to clinicians and only few are in development, highlighting the need for new strategies to overcome the antibiotic resistance crisis. Combining existing antibiotics with phages, viruses the infect bacteria, is an attractive and promising alternative to standalone therapies. Phage-antibiotic combinations have been shown to suppress the emergence of resistance in bacteria, and sometimes even reverse it. Here, we discuss the mechanisms by which phage-antibiotic combinations reduce resistance evolution, and the potential limitations these mechanisms have in steering microbial resistance evolution in a desirable direction. We also emphasize the importance of gaining a better understanding of mechanisms behind physiological and evolutionary phage-antibiotic interactions in complex in-patient environments.


Assuntos
Antibacterianos/farmacologia , Bactérias/efeitos dos fármacos , Bacteriófagos/efeitos dos fármacos , Resistência Microbiana a Medicamentos/efeitos dos fármacos , Evolução Molecular , Terapia por Fagos , Bactérias/genética , Genes Bacterianos
12.
Pak J Biol Sci ; 23(11): 1481-1486, 2020 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-33274878

RESUMO

BACKGROUND AND OBJECTIVE: Pectobacterium carotovorum subsp. carotovorum is a plant-pathogenic bacterium. It is a post-harvest pathogen and causes soft rot diseases in infected plants. Different virulent bacteriophages have been isolated from different regions in the world. These bacteriophages were tolerant to high concentrations of calcium chloride and magnesium chloride. Whereas, the high concentrations of zinc chloride and aluminum chloride decreased the activity and stability of phages. Therefore, the present research aimed to study the biology of P. carotovorum phage (Pc1) by using a one-step growth experiment, its stability to different concentrations of some chemicals and molecular characteristics of this phage isolate. MATERIALS AND METHODS: One step growth experiment, chemical stability, and molecular characteristics by using RAPD-PCR of P. carotovorum phage (Pc1) were studied. RESULTS: The P. carotovorum phage (Pc1) isolate was found to have a latent period of 20 min and its burst size is about 92 pfu cell-1. Calcium chloride, magnesium chloride, and copper sulphate (from 0.1-0.5 mM) increased the infectivity of Pc1 phage, while, zinc chloride in the same concentrations reduced its infectivity. RAPD-PCR amplification was indicated that the total amplified products were 32 bands with size ranged from 0.179-2.365 Kbp. CONCLUSION: Since, zinc chloride (at concentrations of 0.1-0.5 mM) reduced infectivity of Pc1 phage isolate, therefore, any chemical compounds containing zinc must be avoided in designing biocontrol strategy by using phages against soft rot bacterium (P. carotovorum) in potatoes.


Assuntos
Bacteriófagos/patogenicidade , Pectobacterium/virologia , Controle Biológico de Vetores , Doenças das Plantas/prevenção & controle , Solanum tuberosum/microbiologia , Bacteriófagos/efeitos dos fármacos , Bacteriófagos/genética , Bacteriófagos/metabolismo , Cloretos/farmacologia , Interações Hospedeiro-Patógeno , Pectobacterium/patogenicidade , Doenças das Plantas/microbiologia , Virulência , Compostos de Zinco/farmacologia
13.
Viruses ; 12(11)2020 11 17.
Artigo em Inglês | MEDLINE | ID: mdl-33213034

RESUMO

To provide insights into phage-host interactions during winemaking, we assessed whether phenolic compounds modulate the phage predation of Oenococcus oeni. Centrifugal partition chromatography was used to fractionate the phenolic compounds of a model red wine. The ability of lytic oenophage OE33PA to kill its host was reduced in the presence of two collected fractions in which we identified five compounds. Three, namely, quercetin, myricetin and p-coumaric acid, significantly reduced the phage predation of O. oeni when provided as individual pure molecules, as also did other structurally related compounds such as cinnamic acid. Their presence was correlated with a reduced adsorption rate of phage OE33PA on its host. Strikingly, none of the identified compounds affected the killing activity of the distantly related lytic phage Vinitor162. OE33PA and Vinitor162 were shown to exhibit different entry mechanisms to penetrate into bacterial cells. We propose that ligand-receptor interactions that mediate phage adsorption to the cell surface are diverse in O. oeni and are subject to differential interference by phenolic compounds. Their presence did not induce any modifications in the cell surface as visualized by TEM. Interestingly, docking analyses suggest that quercetin and cinnamic acid may interact with the tail of OE33PA and compete with host recognition.


Assuntos
Bacteriófagos/efeitos dos fármacos , Oenococcus/virologia , Fenóis/farmacologia , Vinho/análise , Ácidos Cumáricos/química , Flavonoides/química , Interações Hospedeiro-Patógeno/efeitos dos fármacos , Simulação de Acoplamento Molecular , Oenococcus/efeitos dos fármacos , Fenóis/química
14.
PLoS Biol ; 18(10): e3000877, 2020 10.
Artigo em Inglês | MEDLINE | ID: mdl-33048924

RESUMO

Bacteriophages (phages) are critical players in the dynamics and function of microbial communities and drive processes as diverse as global biogeochemical cycles and human health. Phages tend to be predators finely tuned to attack specific hosts, even down to the strain level, which in turn defend themselves using an array of mechanisms. However, to date, efforts to rapidly and comprehensively identify bacterial host factors important in phage infection and resistance have yet to be fully realized. Here, we globally map the host genetic determinants involved in resistance to 14 phylogenetically diverse double-stranded DNA phages using two model Escherichia coli strains (K-12 and BL21) with known sequence divergence to demonstrate strain-specific differences. Using genome-wide loss-of-function and gain-of-function genetic technologies, we are able to confirm previously described phage receptors as well as uncover a number of previously unknown host factors that confer resistance to one or more of these phages. We uncover differences in resistance factors that strongly align with the susceptibility of K-12 and BL21 to specific phage. We also identify both phage-specific mechanisms, such as the unexpected role of cyclic-di-GMP in host sensitivity to phage N4, and more generic defenses, such as the overproduction of colanic acid capsular polysaccharide that defends against a wide array of phages. Our results indicate that host responses to phages can occur via diverse cellular mechanisms. Our systematic and high-throughput genetic workflow to characterize phage-host interaction determinants can be extended to diverse bacteria to generate datasets that allow predictive models of how phage-mediated selection will shape bacterial phenotype and evolution. The results of this study and future efforts to map the phage resistance landscape will lead to new insights into the coevolution of hosts and their phage, which can ultimately be used to design better phage therapeutic treatments and tools for precision microbiome engineering.


Assuntos
Bacteriófagos/fisiologia , Escherichia coli/virologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Bacteriófagos/efeitos dos fármacos , Vias Biossintéticas/efeitos dos fármacos , Sistemas CRISPR-Cas/genética , GMP Cíclico/análogos & derivados , GMP Cíclico/farmacologia , DNA/genética , Regulação para Baixo/efeitos dos fármacos , Regulação para Baixo/genética , Escherichia coli/efeitos dos fármacos , Escherichia coli/genética , Regulação Bacteriana da Expressão Gênica/efeitos dos fármacos , Genes Essenciais , Genoma Bacteriano , Mutação/genética , Fenótipo , Reprodutibilidade dos Testes , Supressão Genética
15.
Nucleic Acids Res ; 48(18): 10383-10396, 2020 10 09.
Artigo em Inglês | MEDLINE | ID: mdl-32941607

RESUMO

In the constant evolutionary battle against mobile genetic elements (MGEs), bacteria have developed several defense mechanisms, some of which target the incoming, foreign nucleic acids e.g. restriction-modification (R-M) or CRISPR-Cas systems. Some of these MGEs, including bacteriophages, have in turn evolved different strategies to evade these hurdles. It was recently shown that the siphophage CAjan and 180 other viruses use 7-deazaguanine modifications in their DNA to evade bacterial R-M systems. Among others, phage CAjan genome contains a gene coding for a DNA-modifying homolog of a tRNA-deazapurine modification enzyme, together with four 7-cyano-7-deazaguanine synthesis genes. Using the CRISPR-Cas9 genome editing tool combined with the Nanopore Sequencing (ONT) we showed that the 7-deazaguanine modification in the CAjan genome is dependent on phage-encoded genes. The modification is also site-specific and is found mainly in two separate DNA sequence contexts: GA and GGC. Homology modeling of the modifying enzyme DpdA provides insight into its probable DNA binding surface and general mode of DNA recognition.


Assuntos
Bacteriófagos/genética , DNA/genética , Motivos de Nucleotídeos/genética , Pirimidinonas/farmacologia , Pirróis/farmacologia , Bacteriófagos/efeitos dos fármacos , Sequência de Bases/efeitos dos fármacos , Sistemas CRISPR-Cas/genética , DNA/efeitos dos fármacos , Enzimas de Restrição-Modificação do DNA/efeitos dos fármacos , Escherichia coli/virologia , Edição de Genes , Guanina/análogos & derivados , Guanina/farmacologia , Humanos , Sequenciamento por Nanoporos , Motivos de Nucleotídeos/efeitos dos fármacos , Siphoviridae/genética
16.
Future Microbiol ; 15: 767-777, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-32700548

RESUMO

Viruses are considered biological entities that possess a genome and can adapt to the environment of living organisms. Since they are obligate intracellular parasites, their cycle of replication can result in cell death, and consequently, some viruses are harmful to mammalian cells and can cause disease in humans. Therefore, the search for substances for the treatment of viral diseases can be accomplished through the use of bacteriophages as models for eukaryotic cell viruses. Thus, this review highlights the main studies identifying substances with antiphage activity in comparison assays involving phages and eukaryotic viruses, in order to explore the potential of these substances as antivirals. As a future perspective, this approach may help at the beginning of an Antiviral Age.


Assuntos
Antivirais/farmacologia , Bacteriófagos/efeitos dos fármacos , Viroses/tratamento farmacológico , Vírus/efeitos dos fármacos , Animais , Produtos Biológicos/farmacologia , Descoberta de Drogas , Humanos
17.
Drug Des Devel Ther ; 14: 1867-1883, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32523333

RESUMO

Wound infection kills a large number of patients worldwide each year. Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, and Pseudomonas aeruginosa are the most important colonizing pathogens of wounds that, with various virulence factors and impaired immune system, causes extensive tissue damage and nonhealing wounds. Furthermore, the septicemia caused by these pathogens increases the mortality rate due to wound infections. Because of the prevalence of antibiotic resistance in recent years, the use of antibiotics to inhibit these pathogens has been restricted, and the topical application of antibiotics in wound infections increases antibiotic resistance. Therefore, finding a new therapeutic strategy against wound infections is so essential since these infections have a destructive effect on the patient's mental health and high medical costs. In this review, we discussed the use of phages for the prevention of multidrug-resistant (MDR) bacteria, causing wound infection and their role in wound healing in animal models and clinical trials. The results showed that phages have a high ability to inhibit different wound infections caused by MDR bacteria, heal the wound faster, have lower side effects and toxicity, destroy bacterial biofilm, and they are useful in controlling immune responses. Many studies have used animal models to evaluate the function of phages, and this study appears to have a positive impact on the use of phages in clinical practice and the development of a new therapeutic approach to control wound infections, although there are still many limitations.


Assuntos
Antibacterianos/farmacologia , Bacteriófagos/efeitos dos fármacos , Farmacorresistência Bacteriana Múltipla/efeitos dos fármacos , Infecção dos Ferimentos/tratamento farmacológico , Acinetobacter baumannii/efeitos dos fármacos , Animais , Ensaios Clínicos como Assunto , Humanos , Klebsiella pneumoniae/efeitos dos fármacos , Testes de Sensibilidade Microbiana , Pseudomonas aeruginosa/efeitos dos fármacos , Soluções , Staphylococcus aureus/efeitos dos fármacos , Infecção dos Ferimentos/microbiologia
18.
Comp Med ; 70(4): 328-335, 2020 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-32471521

RESUMO

Corynebacterium bovis is the causative agent of Corynebacterium-associated hyperkeratosis in immunocompromised mice. The resulting skin pathology can be profound and can be associated with severe wasting, making the animals unsuitable for research. Although the administration of antibiotics is effective in resolving clinical symptoms, antibiotics do not eradicate the offending bacterium. Furthermore, antibiotic use may be contraindicated as it can affect tumor growth and is associated with Clostridioides difficile enterotoxemia in highly immunocompromised murine strains. Lysins, which are lytic enzymes obtained from bacteriophages, are novel antimicrobial agents for treating bacterial diseases. The advantage of lysins are its target specificity, with minimal off-target complications that could affect the host or the biology of the engrafted tumor. The aim of this study was to identify lysins active against C. bovis. Chemical activation of latent prophages by using mitomycin C in 3 C. bovis isolates did not cause bacteriophage induction as determined through plaque assays and transmission electron microscopy. As an alternative approach, 8 lysins associated with other bacterial species, including those from the closely related species C. falsenii, were tested for their lytic action against C. bovis but were unsuccessful. These findings were congruent with the previously reported genomic analysis of 21 C. bovis isolates, which failed to reveal bacteriophage sequences by using the PHAST and PHASTER web server tools. From these results, we suggest C. bovis is among those rare bacterial species devoid of lysogenic bacteriophages, thus making the identification of C. bovis-specific lysins more challenging. However, C. bovis may be a useful model organism for studying the effects of antiphage systems.


Assuntos
Antibacterianos/farmacocinética , Bacteriófagos/efeitos dos fármacos , Corynebacterium/virologia , Animais , Infecções por Corynebacterium/tratamento farmacológico , Hospedeiro Imunocomprometido , Camundongos , Doenças dos Roedores
19.
Eur J Pharm Biopharm ; 151: 181-188, 2020 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32315699

RESUMO

The increasing prevalence of multidrug resistant bacteria has warranted the search for new antimicrobial agents as existing antibiotics lose their potency. Among these, bacteriophage therapy, as well as the administration of specific bacteriolysis agents, i.e., lytic enzymes, have emerged as attractive alternatives. Nebulizers offer the possibility for delivering these therapeutics directly to the lung, which is particularly advantageous as a non-invasive and direct route to treat bacterial lung infections. Nevertheless, nebulizers can often result in significant degradation of the bacteriophage or protein, both structurally and functionally, due to the large stresses the aerosolization process imposes on these entities. In this work, we assess the capability of a novel low-cost and portable hybrid surface and bulk acoustic wave platform (HYDRA) to nebulize a Myoviridae bacteriophage (phage K) and lytic enzyme (lysostaphin) that specifically targets Staphylococcus aureus. Besides its efficiency in producing phage or protein-laden aerosols within the 1-5 µm respirable range for optimum delivery to the lower respiratory tract where lung infections commonly take place, we observe that the HYDRA platform-owing to the efficiency of driving the aerosolization process at relatively low powers and high frequencies (approximately 10 MHz)-does not result in appreciable denaturation of the phages or proteins, such that the loss of antimicrobial activity following nebulization is minimized. Specifically, a low (0.1 log10 (pfu/ml)) titer loss was obtained with the phages, resulting in a high viable respirable fraction of approximately 90%. Similarly, minimal loss of antimicrobial activity was obtained with lysostaphin upon nebulization wherein its minimum inhibitory concentration (0.5 µg/ml) remained unaltered as compared with the non-nebulized control. These results therefore demonstrate the potential of the HYDRA nebulization platform as a promising strategy for pulmonary administration of alternative antimicrobial agents to antibiotics for the treatment of lung diseases caused by pathogenic bacteria.


Assuntos
Antibacterianos/administração & dosagem , Antibacterianos/química , Pulmão/efeitos dos fármacos , Staphylococcus aureus/efeitos dos fármacos , Acústica , Administração por Inalação , Aerossóis/administração & dosagem , Aerossóis/química , Bacteriólise/efeitos dos fármacos , Bacteriófagos/efeitos dos fármacos , Testes de Sensibilidade Microbiana/métodos , Myoviridae/efeitos dos fármacos , Nebulizadores e Vaporizadores , Infecções Estafilocócicas/tratamento farmacológico
20.
Mater Sci Eng C Mater Biol Appl ; 111: 110840, 2020 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-32279737

RESUMO

This study provides a new therapeutic response to postoperative joint and bone infections. Alone or in combination with antibiotics, phage therapy has many advantages, including accurate targeting of pathogenic bacteria. In addition, a decrease in harmful side effects can improve the healing process. Integrating the bacteriophage directly into the graft product will improve the antibacterial spread over the site of the surgery. The phage cocktail-filled ceramics are an innovative device for localized and curative phage therapy (in prosthetic replacement surgery, for example) in bone and joint surgery. Calcium phosphate-based ceramics were synthesized and shaped by stereolithography (3D) before loading by a phage cocktail to lyse a heterospecific bacterial population. In addition, the device makes possible the protection of osteoblastic cells against Staphylococcus aureus infection during their colonization on the ceramic material and prevents the formation of biofilm on the surface of biomaterials.


Assuntos
Cerâmica/uso terapêutico , Infecção Hospitalar/terapia , Terapia por Fagos , Impressão Tridimensional , Animais , Bacteriófagos/efeitos dos fármacos , Biofilmes/efeitos dos fármacos , Fosfatos de Cálcio/farmacologia , Linhagem Celular , Proliferação de Células/efeitos dos fármacos , Infecção Hospitalar/microbiologia , Citoproteção/efeitos dos fármacos , Escherichia coli/efeitos dos fármacos , Escherichia coli/crescimento & desenvolvimento , Escherichia coli/fisiologia , Escherichia coli/ultraestrutura , Camundongos , Osteoblastos/citologia , Osteoblastos/efeitos dos fármacos , Plâncton/efeitos dos fármacos , Staphylococcus aureus/efeitos dos fármacos , Staphylococcus aureus/crescimento & desenvolvimento , Staphylococcus aureus/fisiologia , Staphylococcus aureus/ultraestrutura , Propriedades de Superfície , Difração de Raios X
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