Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 38
Filtrar
1.
Epidemiol Infect ; 152: e101, 2024 Aug 22.
Artigo em Inglês | MEDLINE | ID: mdl-39168635

RESUMO

Campylobacter spp. are leading bacterial gastroenteritis pathogens. Infections are largely underreported, and the burden of outbreaks may be underestimated. Current strategies of testing as few as one isolate per sample can affect attribution of cases to epidemiologically important sources with high Campylobacter diversity, such as chicken meat. Multiple culture method combinations were utilized to recover and sequence Campylobacter from 45 retail chicken samples purchased across Norwich, UK, selecting up to 48 isolates per sample. Simulations based on resampling were used to assess the impact of Campylobacter sequence type (ST) diversity on outbreak detection. Campylobacter was recovered from 39 samples (87%), although only one sample was positive through all broth, temperature, and plate combinations. Three species were identified (Campylobacter jejuni, Campylobacter coli, and Campylobacter lari), and 33% of samples contained two species. Positive samples contained 1-8 STs. Simulation revealed that up to 87 isolates per sample would be required to detect 95% of the observed ST diversity, and 26 isolates would be required for the average probability of detecting a random theoretical outbreak ST to reach 95%. An optimized culture approach and selecting multiple isolates per sample are essential for more complete Campylobacter recovery to support outbreak investigation and source attribution.


Assuntos
Campylobacter , Galinhas , Galinhas/microbiologia , Animais , Campylobacter/isolamento & purificação , Campylobacter/genética , Campylobacter/classificação , Infecções por Campylobacter/epidemiologia , Infecções por Campylobacter/microbiologia , Infecções por Campylobacter/veterinária , Campylobacter jejuni/isolamento & purificação , Campylobacter jejuni/genética , Campylobacter coli/isolamento & purificação , Campylobacter coli/genética , Microbiologia de Alimentos , Surtos de Doenças , Reino Unido/epidemiologia , Carne/microbiologia , Variação Genética , Campylobacter lari/genética , Campylobacter lari/isolamento & purificação
2.
Appl Environ Microbiol ; 88(23): e0136822, 2022 12 13.
Artigo em Inglês | MEDLINE | ID: mdl-36354326

RESUMO

Members of the Campylobacter lari group are causative agents of human gastroenteritis and are frequently found in shellfish, marine waters, shorebirds, and marine mammals. Within a One Health context, we used comparative genomics to characterize isolates from a diverse range of sources and geographical locations within Europe and Australia and assess possible transmission of food, animal, and environmental isolates to the human host. A total of 158 C. lari isolates from Australia, Denmark, France, and Germany, which included 82 isolates from human stool and blood, 12 from food, 14 from domestic animal, 19 from waterbirds, and 31 from the environment were analyzed. Genome-wide analysis of the genetic diversity, virulence, and antimicrobial resistance (AMR) traits was carried-out. Most of the isolates belonged to C. lari subsp. lari (Cll; 98, 62.0%), while C. lari subsp. concheus and C. lari urease-positive thermotolerant Campylobacter (UPTC) were represented by 12 (7.6%) and 15 (9.5%) isolates, respectively. Furthermore, 33 (20.9%) isolates were not assigned a subspecies and were thus attributed to distant Campylobacter spp. clades. Whole-genome sequence-derived multilocus sequence typing (MLST) and core-genome MLST (cgMLST) analyses revealed a high genetic diversity with 97 sequence types (STs), including 60 novel STs and 14 cgMLST clusters (≤10 allele differences), respectively. The most prevalent STs were ST-21, ST-70, ST-24, and ST-58 (accounting for 13.3%, 4.4%, 3.8%, and 3.2% of isolates, respectively). A high prevalence of the 125 examined virulence-related loci (from 76.8 to 98.4% per isolate) was observed, especially in Cll isolates, suggesting a probable human pathogenicity of these strains. IMPORTANCE Currently, relatedness between bacterial isolates impacting human health is easily monitored by molecular typing methods. These approaches rely on discrete loci or whole-genome sequence (WGS) analyses. Campylobacter lari is an emergent human pathogen isolated from diverse ecological niches, including fecal material from humans and animals, aquatic environments, and seafood. The presence of C. lari in such diverse sources underlines the importance of adopting an integrated One Health approach in studying C. lari population structure for conducting epidemiological risk assessment. This retrospective study presents a comparative genomics analysis of C. lari isolates retrieved from two different continents (Europe and Australia) and from different sources (human, domestic animals, waterbirds, food, and environment). It was designed to improve knowledge regarding C. lari ecology and pathogenicity, important for developing effective surveillance and disease prevention strategies.


Assuntos
Infecções por Campylobacter , Campylobacter lari , Leucemia Linfocítica Crônica de Células B , Saúde Única , Animais , Humanos , Infecções por Campylobacter/epidemiologia , Infecções por Campylobacter/veterinária , Infecções por Campylobacter/microbiologia , Campylobacter lari/genética , Campylobacter lari/isolamento & purificação , Genômica , Tipagem de Sequências Multilocus , Estudos Retrospectivos
3.
Foodborne Pathog Dis ; 18(2): 114-122, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-32931346

RESUMO

Consumption of Campylobacter-contaminated food is one of the most common causes of bacterial diarrhea. A previously developed quantitative polymerase chain reaction (qPCR) utilizing the SmartCycler instrument platform for identification of Campylobacter jejuni, Campylobacter coli, and Campylobacter lari had to be modified to address the recent discontinuation of the SmartCycler system. In this study, a multiplex qPCR assay was optimized on the Applied Biosystems 7500 Fast (AB7500F) platform to continue using qPCR for the identification of three target Campylobacter spp. AB7500F qPCR efficiencies obtained by testing reference genomic DNA (gDNA) were 90.9%, 86.4%, and 94.6% for C. jejuni, C. coli, and C. lari, respectively, with all correlation coefficient values >0.99. The qPCR results exhibited 100% specificity by testing gDNA samples from 37 non-target reference strains and 86 target strains (50 C. jejuni, 27 C. coli, and 9 C. lari strains) in this study. The lowest detection level using gDNA was 4, 7, and 2 genome copies per reaction for C. jejuni, C. coli, and C. lari, respectively. With a 2-day enrichment procedure, the qPCR method correctly detected target species in a spiked food matrix (frog leg, an aquaculture product). The sensitivity in 25 g food matrix was 4 colony-forming units (CFUs) for C. jejuni, 3 CFUs for C. coli, and 2 CFUs for C. lari. The results suggest that this AB7500F-based qPCR has potential applications for the identification of C. jejuni, C. coli, and C. lari in contaminated food.


Assuntos
Campylobacter/genética , DNA Bacteriano/análise , Análise de Alimentos/métodos , Microbiologia de Alimentos/métodos , Reação em Cadeia da Polimerase Multiplex/métodos , Animais , Campylobacter/isolamento & purificação , Infecções por Campylobacter/microbiologia , Infecções por Campylobacter/veterinária , Campylobacter coli/genética , Campylobacter coli/isolamento & purificação , Campylobacter jejuni/genética , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/genética , Campylobacter lari/isolamento & purificação , Carne/microbiologia , Sensibilidade e Especificidade
4.
Appl Environ Microbiol ; 86(9)2020 04 17.
Artigo em Inglês | MEDLINE | ID: mdl-32111591

RESUMO

Campylobacter spp. have been recognized as major foodborne pathogens worldwide. An increasing frequency of antibiotic-resistant pathogens, including Campylobacter spp., have been identified to transmit from food products to humans and cause severe threats to public health. To better mitigate the antibiotic resistance crisis, rapid detection methods are required to provide timely antimicrobial resistance surveillance data for agri-food systems. Herein, we developed a polymer-based microfluidic device for the identification and antimicrobial susceptibility testing (AST) of Campylobacter spp. An array of bacterial incubation chambers were created in the microfluidic device, where chromogenic medium and antibiotics were loaded. The growth of Campylobacter spp. was visualized by color change due to chromogenic reactions. This platform achieved 100% specificity for Campylobacter identification. Sensitive detection of multiple Campylobacter species (C. jejuni, C. coli, and C. lari) was obtained in artificially contaminated milk and poultry meat, with detection limits down to 1 × 102 CFU/ml and 1 × 104 CFU/25 g, respectively. On-chip AST determined Campylobacter antibiotic susceptibilities by the lowest concentration of antibiotics that can inhibit bacterial growth (i.e., no color change observed). High coincidences (91% to 100%) of on-chip AST and the conventional agar dilution method were achieved against several clinically important antibiotics. For a presumptive colony, on-chip identification and AST were completed in parallel within 24 h, whereas standard methods, including biochemical assays and traditional culture-based AST, take several days for multiple sequential steps. In conclusion, this lab-on-a-chip device can achieve rapid and reliable detection of antibiotic-resistant Campylobacter spp.IMPORTANCE Increasing concerns of antibiotic-resistant Campylobacter spp. with regard to public health emphasize the importance of efficient and fast detection. This study described the timely identification and antimicrobial susceptibility testing of Campylobacter spp. by using a microfluidic device. Our developed method not only reduced the total analysis time, but it also simplified food sample preparation and chip operation for end users. Due to the miniaturized size of the lab-on-a-chip platform, the detection was achieved by using up to 1,000 times less of the reagents than with standard reference methods, making it a competitive approach for rapid screening and surveillance study in food industries. In addition, multiple clinically important Campylobacter species (C. jejuni, C. coli, and C. lari) could be tested by our device. This device has potential for wide application in food safety management and clinical diagnostics, especially in resource-limited regions.


Assuntos
Campylobacter coli/efeitos dos fármacos , Campylobacter jejuni/efeitos dos fármacos , Campylobacter lari/efeitos dos fármacos , Farmacorresistência Bacteriana Múltipla , Testes de Sensibilidade Microbiana/métodos , Microfluídica/métodos , Antibacterianos/farmacologia , Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Dispositivos Lab-On-A-Chip
5.
Foodborne Pathog Dis ; 14(7): 371-378, 2017 07.
Artigo em Inglês | MEDLINE | ID: mdl-28440688

RESUMO

BACKGROUND: Consumption of Campylobacter contaminated food or water is a leading cause of human acute gastroenteritis. Campylobacter jejuni, Campylobacter coli, and Campylobacter lari account for over 95% of total Campylobacter infections. A multiplex quantitative polymerase chain reaction (qPCR) for simultaneous identification of C. jejuni, C. coli, and C. lari was developed for use with the SmartCycler II system. MATERIALS AND METHODS: We evaluated and combined previously described primers and probes for Campylobacter detection, designed a new internal amplification control, and optimized the multiplex qPCR for the detection of C. jejuni, C. coli, and C. lari. RESULTS: This method was 100% specific when tested against a panel of 32 target Campylobacter strains and 31 non-Campylobacter reference strains. Furthermore, there was no cross-reactivity with seven strains from four nontarget Campylobacter species. The amplification efficiency of each target in this multiplex qPCR was over 90%, and each coefficient of linearity was greater than 0.99. With artificially mixed genomic DNA, this method detected as few as two, three, and two genome copies of C. jejuni, C. coli, and C. lari, respectively. This method was also able to detect these three Campylobacter species in artificially contaminated milk with a sensitivity of five spiked cells of each target per reaction. CONCLUSION: The three Campylobacter targets were simultaneously identified using artificially mixed genomic DNA and spiked raw milk. This SmartCycler-based multiplex qPCR is a rapid, specific, and sensitive method to identify C. jejuni, C. coli, and C. lari.


Assuntos
Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Reação em Cadeia da Polimerase Multiplex , Animais , Infecções por Campylobacter/diagnóstico , DNA Bacteriano/isolamento & purificação , Contaminação de Alimentos/análise , Microbiologia de Alimentos , Limite de Detecção , Leite/microbiologia , Sensibilidade e Especificidade
6.
Jpn J Infect Dis ; 69(3): 256-8, 2016 May 20.
Artigo em Inglês | MEDLINE | ID: mdl-26255737

RESUMO

In this study, we devised a multiplex PCR assay based on the gene of cytolethal distending toxin (cdt) B subunit to simultaneously detect and discriminate Campylobacter jejuni, C. fetus, C. coli, C. upsaliensis, C. hyointestinalis, and C. lari. Species-specific PCR products were successfully obtained from all 38 C. jejuni, 12 C. fetus, 39 C. coli, 22 C. upsaliensis, 24 C. hyointestinalis, and 7 C. lari strains tested. On the other hand, no specific PCR products were obtained from other campylobacters and bacterial species tested (41 strains in total). The proposed multiplex PCR assay is a valuable tool for detection and descrimination of 6 major Campylobacter species, that are associated with gastrointestinal diseases in humans.


Assuntos
Infecções por Campylobacter/diagnóstico , Campylobacter coli/genética , Campylobacter fetus/genética , Campylobacter hyointestinalis/genética , Campylobacter jejuni/genética , Campylobacter lari/genética , Campylobacter upsaliensis/genética , Reação em Cadeia da Polimerase Multiplex/métodos , Toxinas Bacterianas/genética , Infecções por Campylobacter/microbiologia , Campylobacter coli/isolamento & purificação , Campylobacter fetus/isolamento & purificação , Campylobacter hyointestinalis/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Campylobacter upsaliensis/isolamento & purificação , Primers do DNA/química , DNA Bacteriano/genética , Diagnóstico Diferencial , Humanos , Sensibilidade e Especificidade , Especificidade da Espécie
7.
J Food Prot ; 78(7): 1363-9, 2015 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-26197289

RESUMO

A multiplex PCR assay for simultaneous detection and differentiation of Campylobacter jejuni, Campylobacter coli, and Campylobacter lari was developed and validated to assess the occurrence of these bacteria in fresh chicken meat and by-products in Bangkok, Thailand, by using a new combination of four previously published PCR primers for C. jejuni, C. coli, C. lari, and a universal 16S rDNA gene as an internal control. The specificity was determined by using 13 strains of other bacteria. With pure culture DNA, the detection limit was 0.017 ng/PCR for C. jejuni and C. coli and was 0.016 ng/PCR for C. lari. It can detect 10 CFU of C. jejuni, C. coli, and C. lari in 2 g of chicken meat within a 16-h enrichment time. Our multiplex PCR assay was applied for identification of Campylobacter spp. in 122 supermarket samples and 108 fresh market samples. Of the 230 samples evaluated by multiplex PCR, 54.0, 3.3, and 10.7% of supermarket samples were positive for C. jejuni, C. coli, and mixed C. jejuni and C. coli, respectively, and 56.5 and 33.3% of fresh market samples were positive for C. jejuni and mixed C. jejuni and C. coli, respectively. No sample was positive for C. lari. Fresh market samples had significantly higher C. jejuni and C. coli contamination than those from supermarkets (relative risk: 1.3; P = 0.0001). Compared with the culture method (a gold standard), the sensitivity, specificity, positive predictive value, negative predictive value, and diagnostic accuracy of multiplex PCR were 97.7, 86.8, 96.1, 92.0, and 95.2%, respectively. No significant difference was observed between results from two methods (P = 0.55). Therefore, the established multiplex PCR was not only rapid and easy to perform but had a high sensitivity and specificity to distinguish between C. jejuni, C. coli, and C. lari, even in samples containing mixed contamination. Our study indicated that fresh chicken meat and by-products from fresh markets were significantly less hygienic than those from supermarkets.


Assuntos
Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Produtos da Carne/microbiologia , Reação em Cadeia da Polimerase Multiplex/métodos , Aves Domésticas/microbiologia , Animais , Campylobacter coli/genética , Campylobacter jejuni/genética , Campylobacter lari/genética , Galinhas/microbiologia , Primers do DNA/genética , Contaminação de Alimentos/análise , Sensibilidade e Especificidade , Tailândia
8.
Folia Microbiol (Praha) ; 60(6): 505-14, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-25906999

RESUMO

Full-length tlyA gene and its adjacent genetic loci from the urease-positive thermophilic Campylobacter (UPTC) CF89-12 [approximately 15,000 base pairs (bp) in length], as well as a reference strain Campylobacter lari RM2100 (approximately 9,000 bp), were analyzed. The possible open-reading frame of tlyA from UPTC CF89-12 was shown to have 720 bp with a calculated molecular mass of approximately 26.7 kDa. Using a primer pair designed in silico, a total of approximately 1.1 kbp consisting of putative promoter region, structural gene for tlyA, and its adjacent genetic loci were identified in all 17 C. lari isolates [n = 13 for UPTC; n = 4 for urease-negative (UN) C. lari]. Although sequence differences were demonstrated at approximately 20 loci within the 90 bp non-coding (NC) region, including the putative promoter structure candidates immediately upstream of the tlyA gene among the 18 isolates including C. lari RM2100, no sequence differences were identified within the NC region among the five UN C. lari isolates examined. A start codon ATG and a probable ribosome-binding site, AGGC(T)GG(A), for the tlyA gene were identified in all 18 isolates, including C. lari RM2100. The putative intrinsic ρ-independent transcriptional terminator structure candidate was also identified for the tlyA gene in both UPTC CF89-12 and C. lari RM2100. Additionally, the hemolysis assay was performed with some of the C. lari isolates. The tlyA gene nucleotide sequence data may possibly be useful for discrimination between UN C. lari and UPTC organisms, as well as for the differentiation among the four thermophilic Campylobacter species.


Assuntos
Proteínas de Bactérias/genética , Infecções por Campylobacter/microbiologia , Infecções por Campylobacter/veterinária , Campylobacter lari/genética , Proteínas Hemolisinas/genética , Sequência de Aminoácidos , Animais , Proteínas de Bactérias/química , Sequência de Bases , Aves/microbiologia , Bivalves/microbiologia , Campylobacter lari/química , Campylobacter lari/classificação , Campylobacter lari/isolamento & purificação , Galinhas/microbiologia , Microbiologia Ambiental , Proteínas Hemolisinas/química , Dados de Sequência Molecular , Fases de Leitura Aberta , Filogenia , Regiões Promotoras Genéticas , Alinhamento de Sequência
10.
Water Res ; 61: 243-52, 2014 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-24930011

RESUMO

The occurrence and diversity of thermophilic Campylobacter species (C. jejuni, coli, and lari) were studied in water samples from four river basins located across Canada. These basins located in Quebec (Bras d'Henri), Alberta (Oldman), Ontario (South Nation), and British Columbia (Sumas) represented some of the most intensive farming areas in Canada for hog, beef cattle, dairy cattle, and poultry, respectively. This study analyzed 769 water samples collected from 23 monitoring sites with agricultural influence, and four reference sites with limited or no agricultural influence. Water samples were collected bi-weekly over two years and analyzed for Campylobacter using a semi-quantitative minimum probable number (MPN) enrichment protocol. Putative isolates were confirmed by genus- and species-specific multiplex polymerase chain reaction (PCR) assays. A total of 377 (49%) water samples were positive for campylobacters with 355 samples having a cell density ranging from 4 to 4000 MPN L(-1). Campylobacters were more common at agricultural than reference sites in each river basin, although this difference was not significant in the Oldman and South Nation (p > 0.05). Campylobacter was significantly more common in the Bras d'Henri and Sumas (63%) compared to the South Nation (45%) and Oldman (33%) River basins (p < 0.05). C. jejuni, C. coli and C. lari were detected in each river basin, and these species occurred in 45% (n = 168), 34% (n = 128) and 19% (n = 73), of all Campylobacter positive samples, respectively. The remaining Campylobacter positive water samples without these three species (n = 67; 18%) were identified as other Campylobacter species. C. jejuni was the predominant species occurring in the Sumas, Oldman and South Nation River basins. However, in the Bras d'Henri River basin with intensive hog production, C. coli was the predominant species. This study found campylobacters to be common in some agricultural systems with intensive livestock farming activities, and different river basins could have strikingly different profiles of either C. jejuni or C. coli as the predominant waterborne thermophilic Campylobacter species.


Assuntos
Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Água Doce/microbiologia , Agricultura , Campylobacter coli/genética , Campylobacter jejuni/genética , Campylobacter lari/genética , Canadá , DNA Bacteriano/análise , DNA Bacteriano/genética , Reação em Cadeia da Polimerase Multiplex , RNA Ribossômico 16S/análise , RNA Ribossômico 16S/genética
11.
J Wildl Dis ; 50(1): 31-41, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-24171567

RESUMO

Campylobacter jejuni is responsible for the majority of bacterial foodborne gastroenteritis in the US, usually due to the consumption of undercooked poultry. Research on which avian species transmit the bacterium is limited, especially in the US. We sampled wild birds in three families-Anatidae, Scolopacidae, and Laridae-in eastern North America to determine the prevalence and specific strains of Campylobacter. The overall prevalence of Campylobacter spp. was 9.2% for all wild birds sampled (n = 781). Campylobacter jejuni was the most prevalent species (8.1%), while Campylobacter coli and Campylobacter lari prevalence estimates were low (1.4% and 0.3%, respectively). We used multilocus sequence typing PCR specific to C. jejuni to characterize clonal complexes and sequence types isolated from wild bird samples and detected 13 novel sequence types, along with a clonal complex previously only associated with human disease (ST-658). Wild birds share an increasing amount of habitat with humans as more landscapes become fragmented and developed for human needs. Wild birds are and will remain an important aspect of public health due to their ability to carry and disperse emerging zoonotic pathogens or their arthropod vectors. As basic information such as prevalence is limited or lacking from a majority of wild birds in the US, this study provides further insight into Campylobacter epidemiology, host preference, and strain characterization of C. jejuni.


Assuntos
Doenças das Aves/epidemiologia , Infecções por Campylobacter/veterinária , Campylobacter/isolamento & purificação , Animais , Animais Selvagens/microbiologia , Técnicas de Tipagem Bacteriana/veterinária , Doenças das Aves/microbiologia , Aves , Campylobacter/classificação , Campylobacter/genética , Infecções por Campylobacter/epidemiologia , Infecções por Campylobacter/microbiologia , Campylobacter coli/classificação , Campylobacter coli/genética , Campylobacter coli/isolamento & purificação , Campylobacter jejuni/classificação , Campylobacter jejuni/genética , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/classificação , Campylobacter lari/genética , Campylobacter lari/isolamento & purificação , Análise por Conglomerados , DNA Bacteriano/genética , Humanos , Mid-Atlantic Region/epidemiologia , Epidemiologia Molecular , Prevalência , Saúde Pública , Análise de Sequência de DNA
12.
Appl Environ Microbiol ; 79(24): 7639-45, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24077717

RESUMO

This large-scale study compared incubation temperatures (37°C versus 42°C) to study the detection of thermophilic Campylobacter species, including Campylobacter jejuni, C. coli, and C. lari, in various surface water samples and bird fecal droppings around Hamilton Harbor, Lake Ontario. The putative culture isolates obtained from incubation temperatures of 37 and 42°C were confirmed by Campylobacter genus- and species-specific triplex PCR assays targeting the 16S rRNA gene and the 16S-23S rRNA gene internal transcribed spacer (ITS) region. A total of 759 water, wastewater, and bird fecal dropping samples were tested. Positive amplification reactions for the genus Campylobacter were found for 454 (60%) samples incubated at 37°C, compared to 258 (34%) samples incubated at 42°C. C. jejuni (16%) and C. lari (12%) were detected significantly more frequently at the 42°C incubation temperature than at 37°C (8% and 5%, respectively). In contrast, significantly higher rates of C. coli (14%) and other Campylobacter spp. (36%) were detected at the 37°C incubation temperature than at 42°C (8% and 7%, respectively). These results were consistent across surface water, wastewater, and bird fecal dropping samples. At times, Campylobacter spp. were recovered and detected at 37°C (3% for C. jejuni, 10% for C. coli, and 3% for C. lari) when the same samples incubated at 42°C were negative. A significantly higher rate of other Campylobacter spp. was detected only at 37°C (32%) than only at 42°C (3%). These results indicate that incubation temperature can significantly influence the culturability and detection of thermophilic and other fastidious Campylobacter spp. and that a comprehensive characterization of the Campylobacter spp. in surface water, wastewaters, or bird fecal droppings will require incubation at both 37 and 42°C.


Assuntos
Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Fezes/microbiologia , Água Doce/microbiologia , Técnicas Microbiológicas/métodos , Águas Residuárias/microbiologia , Animais , Aves , DNA Espaçador Ribossômico/genética , Ontário , Reação em Cadeia da Polimerase , RNA Ribossômico 16S/genética , Temperatura
13.
J Microbiol Methods ; 95(1): 32-8, 2013 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-23811205

RESUMO

A real time quantitative PCR combined with propidium monoazide (PMA) treatment of samples was implemented to quantify live C. jejuni, C. coli and C. lari on broiler chicken carcasses at selected processing steps in the slaughterhouse. The samples were enumerated by culture for comparison. The Campylobacter counts determined with the PMA-qPCR and the culture method were not concordant. We conclude that the qPCR combined with PMA treatment of the samples did not fully reduce the signal from dead cells.


Assuntos
Azidas/metabolismo , Carga Bacteriana/métodos , Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Galinhas/microbiologia , Propídio/análogos & derivados , Reação em Cadeia da Polimerase em Tempo Real/métodos , Animais , Campylobacter coli/fisiologia , Campylobacter jejuni/fisiologia , Campylobacter lari/fisiologia , Viabilidade Microbiana , Propídio/metabolismo
14.
Folia Microbiol (Praha) ; 58(6): 607-13, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23595231

RESUMO

Although the absence of intervening sequences (IVSs) within the 23S rRNA genes in Campylobacter lari isolates has been described, there are apparently no reports regarding correlations between the nucleotide sequences of 23S rRNA genes and erythromycin (Ery) susceptibility in C. lari isolates. Here, we determined the minimum inhibitory concentrations of 35 C. lari isolates [n = 19 for urease-positive thermophilic Campylobacter (UPTC); n = 16 urease-negative (UN) C. lari] obtained from Asia, Europe, and North America. We found that the 18 isolates were resistant to the Ery (defined as ≧8 µg/mL), and three isolates, UPTC A1, UPTC 92251, and UPTC 504, showed increased resistance (16 µg/mL). No correlations between the IVSs in the helix 45 region within the 23S rRNA gene sequences and Ery resistance were identified in the C. lari isolates examined. In addition, no point mutations occurred at any expected or putative position within the V domain in the isolates. In conclusion, antibiotic resistance against the macrolide erythromycin is mediated through an alternative pathway to that described above.


Assuntos
Campylobacter lari/genética , Íntrons , Mutação Puntual , RNA Ribossômico 23S/genética , Animais , Antibacterianos/farmacologia , Ásia , Sequência de Bases , Infecções por Campylobacter/microbiologia , Infecções por Campylobacter/veterinária , Campylobacter lari/efeitos dos fármacos , Campylobacter lari/isolamento & purificação , Farmacorresistência Bacteriana , Microbiologia Ambiental , Eritromicina/farmacologia , Europa (Continente) , Humanos , Testes de Sensibilidade Microbiana , Dados de Sequência Molecular , América do Norte , Análise de Sequência de DNA
15.
Folia Microbiol (Praha) ; 58(3): 253-60, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23132657

RESUMO

An arsenic (ars) four-gene operon, containing genes encoding a putative membrane permease (ArsP), a transcriptional repressor (ArsR), an arsenate reductase (ArsC) and an arsenical-resistance membrane transporter (Acr3) was first identified in urease-positive thermophilic Campylobacter (UPTC) isolate, CF89-12. UPTC CF89-12 and some other Campylobacter lari isolates contained their ars four-genes, similarly, differing from that in the reference C. lari RM2100 strain. Two putative promoters and a putative terminator were identified for the operon in UPTC CF89-12. In vivo transcription of the operon was confirmed in the UPTC cells. PCR experiments using two primer pairs designed in silico to amplify two arsR and arsC-acr3 segments, respectively, generated two amplicons, approximately 200 and 350 base pairs, with all 31 of 31 and 19 of 31 C. lari isolates (n = 17 for UPTC; n = 14 for UN C. lari), respectively. An inverted repeat forming a dyad structure, a potential binding site for a transcriptional repressor, was identified in the promoter region. Within the deduced 61 amino acids sequence of the putative arsR open reading frame from the UPTC CF89-12, a metal binding box and a DNA-binding helix-turn-helix motif were identified. The UPTC CF89-12 and some other UPTC isolates isolated from natural environment were resistant to arsenate.


Assuntos
Arsênio , Campylobacter lari/genética , Genes Bacterianos , Óperon/genética , Sequência de Aminoácidos , Arseniato Redutases/genética , Campylobacter lari/isolamento & purificação , Primers do DNA , DNA Bacteriano/genética , Loci Gênicos , Sequências Hélice-Volta-Hélice/genética , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Fases de Leitura Aberta , RNA Bacteriano/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Alinhamento de Sequência , Análise de Sequência de DNA , Urease/genética
16.
J Infect Chemother ; 19(2): 333-7, 2013 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22965843

RESUMO

We describe a case of bloodstream infection (BSI) caused by Campylobacter lari in a 58-year-old man diagnosed with lumbar pyogenic spondylitis. Anaerobic blood cultures, taken on the day of admission and on hospital day 4, were positive after 30 h of incubation, although no bacteria were detected by Gram staining. After subculture on 5 % sheep blood agar for 2 days at 35 °C in a 5 % CO2 environment, capnophilic, curved, gram-negative bacteria were recovered. The bacteria were identified as C. lari using a combination of phenotypic identification methods and partial 16S rRNA gene sequencing. The BSI was eradicated following combination therapy with intravenous tazobactam/piperacillin, oral erythromycin, and sulfamethoxazole/trimethoprim. These results suggest that accurate identification, to the species level, is important to determine effective treatment of BSI caused by Campylobacter spp. and can help us to understand the epidemiology.


Assuntos
Bacteriemia/microbiologia , Infecções por Campylobacter/sangue , Campylobacter lari/isolamento & purificação , Campylobacter lari/genética , Genes Bacterianos , Humanos , Masculino , Pessoa de Meia-Idade , Tipagem Molecular , RNA Ribossômico 16S/genética , Análise de Sequência de RNA
17.
Folia Microbiol (Praha) ; 56(5): 397-406, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21874596

RESUMO

Molecular cloning, nucleotide sequencing, and characterization of the flaA gene from additional isolates of urease-positive thermophilic Campylobacter (UPTC) were performed. These isolates were obtained from the natural environment in Northern Ireland (n = 9 from mussels) and in England (n = 1 from sea water). All isolates carried the shorter flaA gene, [open reading frames (ORFs), 1,461 to 1,503 base pairs], without any internal termination codons, and did not carry any flaA pseudogenes. The UPTC isolates were well discriminated by the neighbor joining (NJ) phylogenetic tree constructed based on the putative flaA genes ORFs nucleotide sequence information. In addition, the NJ tree constructed based on the flaA-short variable region sequence information discriminated the Campylobacter lari isolates with a similar degree of discrimination power.


Assuntos
Bivalves/microbiologia , Campylobacter/genética , Flagelina/genética , Proteínas Recombinantes/genética , Água do Mar/microbiologia , Análise de Sequência de DNA/métodos , Sequência de Aminoácidos , Animais , Campylobacter/classificação , Campylobacter/isolamento & purificação , Campylobacter/metabolismo , Campylobacter lari/classificação , Campylobacter lari/genética , Campylobacter lari/isolamento & purificação , Campylobacter lari/metabolismo , Clonagem Molecular , Inglaterra , Flagelina/química , Flagelina/metabolismo , Dados de Sequência Molecular , Irlanda do Norte , Fases de Leitura Aberta , Filogenia , Reação em Cadeia da Polimerase , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Urease/metabolismo
18.
J Wildl Dis ; 47(3): 750-4, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21719846

RESUMO

We evaluated the occurrence of three Campylobacter species--C. jejuni, C. coli, and C. lari--from 333 wild bird fecal samples collected at Tri-State Bird Rescue and Research in Newark, Delaware, in 2008. Using multiplex polymerase chain reaction, we detected C. jejuni from six avian families with an overall prevalence rate of 7.2%. We did not detect any other Campylobacter species. Campylobacter jejuni prevalence ranged widely between different avian families with crows (Corvidae) and gulls (Laridae) having the highest prevalence rates (23% and 25%, respectively).


Assuntos
Doenças das Aves/epidemiologia , Infecções por Campylobacter/veterinária , Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Animais , Animais Selvagens/microbiologia , Aves , Infecções por Campylobacter/epidemiologia , Feminino , Masculino , Mid-Atlantic Region/epidemiologia , Reação em Cadeia da Polimerase/veterinária , Prevalência
19.
Folia Microbiol (Praha) ; 56(2): 103-9, 2011 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21465259

RESUMO

We aimed to clarify if the thermophilic Campylobacter lari organisms including urease-negative (UN) C. lari and urease-positive thermophilic Campylobacter (UPTC) can be differentiated at the species and/or subspecies levels by employing the full-length flaA gene and flaA short variable region (SVR) nucleotide sequence information or not. Thermophilic Campylobacter isolates (n = 45) including UN C. lari (n = 17), UPTC (n = 18), and Campylobacter jejuni (n = 10) were well discriminated at the isolate level by the unweighted pair group method using arithmetic means analysis and neighbor joining procedures constructed based on the full-length flaA gene and flaA SVR nucleotide sequence information. Thus, these procedures may possibly be useful for epidemimological studies for C. lari and C. jejuni.


Assuntos
Campylobacter jejuni/classificação , Campylobacter jejuni/genética , Campylobacter lari/classificação , Campylobacter lari/genética , Flagelina/genética , Polimorfismo Genético , Animais , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , Genótipo , Humanos , Dados de Sequência Molecular , Análise de Sequência de DNA
20.
Appl Environ Microbiol ; 76(24): 7949-56, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20971875

RESUMO

The emergence of antimicrobial resistance in Campylobacter spp. has been a growing public health concern globally. The objectives of this study were to determine the prevalence, antimicrobial susceptibility, and genetic relatedness of Campylobacter spp. recovered by the National Antimicrobial Resistance Monitoring System (NARMS) retail meat program. Retail meat samples (n = 24,566) from 10 U.S. states collected between 2002 and 2007, consisting of 6,138 chicken breast, 6,109 ground turkey, 6,171 ground beef, and 6,148 pork chop samples, were analyzed. A total of 2,258 Campylobacter jejuni, 925 Campylobacter coli, and 7 Campylobacter lari isolates were identified. Chicken breast samples showed the highest contamination rate (49.9%), followed by ground turkey (1.6%), whereas both pork chops and ground beef had <0.5% contamination. The most common resistance was to doxycycline/tetracycline (46.6%), followed by nalidixic acid (18.5%), ciprofloxacin (17.4%), azithromycin and erythromycin (2.8%), telithromycin (2.4%), clindamycin (2.2%), and gentamicin (<0.1%). In a subset of isolates tested, no resistance to meropenem and florfenicol was seen. C. coli isolates showed higher resistance rates to antimicrobials, with the exception of doxycycline/tetracycline, than those seen for C. jejuni. Pulsed-field gel electrophoresis (PFGE) fingerprinting resulted in 1,226 PFGE profiles among the 2,318 isolates, with many clones being widely dispersed throughout the 6-year sampling period.


Assuntos
Antibacterianos/farmacologia , Campylobacter coli/efeitos dos fármacos , Campylobacter jejuni/efeitos dos fármacos , Campylobacter lari/efeitos dos fármacos , Farmacorresistência Bacteriana , Carne/microbiologia , Animais , Campylobacter coli/isolamento & purificação , Campylobacter jejuni/isolamento & purificação , Campylobacter lari/isolamento & purificação , Bovinos , Galinhas , Análise por Conglomerados , Impressões Digitais de DNA , Eletroforese em Gel de Campo Pulsado , Genótipo , Tipagem Molecular , Suínos , Perus , Estados Unidos
SELEÇÃO DE REFERÊNCIAS
DETALHE DA PESQUISA