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1.
Virology ; 568: 86-100, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-35149347

RESUMO

Bacteriophage T7 is an extensively studied virulent phage, and its taxonomic family, the Autographiviridae, is broadly synonymous with a strictly virulent lifestyle. It is difficult to imagine how a T7-like phage could function in a "domesticated" temperate lifestyle, in which it is incorporated into the host's genome. Here we describe two temperate T7-like bacteriophages: ProddE, a Desulfovibrio phage, and Pasto, an Agrobacterium phage. Each contains recognizable T7-like proteins in the canonical T7-like gene order, but with the addition of lysogeny gene modules. While ProddE contains a phage-like repressor, Pasto lysogeny appears to be controlled by a novel MarR-like transcriptional regulator. In addition, we identify similar T7-like prophage elements in a wide variety of Gram-negative bacterial genomes and a small number of Gram-positive genomes. Identification of these elements in diverse bacterial species raises interesting evolutionary questions about the origins of T7-like phages and which lifestyle, temperate or virulent, is the ancestral form.


Assuntos
Bacteriófagos/fisiologia , Caudovirales/fisiologia , Evolução Biológica , Evolução Molecular , Regulação Viral da Expressão Gênica , Interações Hospedeiro-Patógeno , Lisogenia , Filogenia , Prófagos/fisiologia , Replicação Viral
2.
Viruses ; 13(8)2021 07 21.
Artigo em Inglês | MEDLINE | ID: mdl-34452284

RESUMO

Kosakonia cowanii (syn. Enterobacter cowanii) is a highly competitive bacterium that lives with plant, insect, fish, bird, and human organisms. It is pathogenic on some plants and an opportunistic pathogen of human. Nine novel viruses that lyse plant pathogenic strains and/or human strains of K. cowanii were isolated, sequenced, and characterized. Kc166A is a novel kayfunavirus, Kc261 is a novel bonnellvirus, and Kc318 is a new cronosvirus (all Autographiviridae). Kc237 is a new sortsnevirus, but Kc166B and Kc283 are members of new genera within Podoviridae. Kc304 is a new winklervirus, and Kc263 and Kc305 are new myoviruses. The viruses differ in host specificity, plaque phenotype, and lysis kinetics. Some of them should be suitable also as pathogen control agents.


Assuntos
Bacteriólise , Bacteriófagos/fisiologia , Caudovirales/fisiologia , Enterobacteriaceae/virologia , Folhas de Planta/microbiologia , Bacteriófagos/classificação , Bacteriófagos/genética , Bacteriófagos/isolamento & purificação , Caudovirales/classificação , Caudovirales/genética , Caudovirales/isolamento & purificação , Enterobacteriaceae/fisiologia , Genoma Viral , Especificidade de Hospedeiro , Humanos , Myoviridae/classificação , Myoviridae/genética , Myoviridae/isolamento & purificação , Myoviridae/fisiologia , Filogenia , Doenças das Plantas/microbiologia , Microbiologia do Solo , Glycine max/microbiologia
3.
Virol J ; 18(1): 9, 2021 01 06.
Artigo em Inglês | MEDLINE | ID: mdl-33407669

RESUMO

BACKGROUND: Nowadays, hundreds of thousands of deaths per year are caused by antibiotic resistant nosocomial infections and the prognosis for future years is much worse, as evidenced by modern research. Bacteria of the Klebsiella genus are one of the main pathogens that cause nosocomial infections. Among the many antimicrobials offered to replace or supplement traditional antibiotics, bacteriophages are promising candidates. METHODS: This article presents microbiological, physicochemical and genomic characterization of 4 virulent bacteriophages belonging to Siphoviridae, Myoviridae and Podoviridae families. Phages were studied by electron microscopy; their host range, lytic activity, adsorption rate, burst size, latent period, frequency of phage-resistant forms generation, lysis dynamics and sensitivity of phage particles to temperature and pH were identified; genomes of all 4 bacteriophages were studied by restriction digestion and complete genome sequence. RESULTS: Studied phages showed wide host range and high stability at different temperature and pH values. In contrast with single phages, a cocktail of bacteriophages lysed all studied bacterial strains, moreover, no cases of the emergence of phage-resistant bacterial colonies were detected. Genomic data proved that isolated viruses do not carry antibiotic resistance, virulence or lysogenic genes. Three out of four bacteriophages encode polysaccharide depolymerases, which are involved in the degradation of biofilms and capsules. CONCLUSIONS: The bacteriophages studied in this work are promising for further in vivo studies and might be used in phage therapy as part of a complex therapeutic and prophylactic phage preparation. The conducted studies showed that the complex preparation is more effective than individual phages. The use of the complex phage cocktail allows to extend the lytic spectrum, and significantly reduces the possibility of phage-resistant forms generation.


Assuntos
Bacteriófagos/fisiologia , Caudovirales/fisiologia , Klebsiella pneumoniae/virologia , Terapia por Fagos/métodos , Bacteriólise , Bacteriófagos/classificação , Bacteriófagos/genética , Caudovirales/classificação , Caudovirales/genética , Caudovirales/isolamento & purificação , DNA Viral/genética , Genoma Viral/genética , Glicosídeo Hidrolases/genética , Glicosídeo Hidrolases/metabolismo , Especificidade de Hospedeiro , Concentração de Íons de Hidrogênio , Infecções por Klebsiella/terapia , Temperatura , Proteínas Virais/genética , Proteínas Virais/metabolismo , Ligação Viral , Latência Viral
4.
Viruses ; 12(10)2020 09 25.
Artigo em Inglês | MEDLINE | ID: mdl-32992766

RESUMO

Staphylococcus epidermidis is a major causative agent of nosocomial infections, mainly associated with the use of indwelling devices, on which this bacterium forms structures known as biofilms. Due to biofilms' high tolerance to antibiotics, virulent bacteriophages were previously tested as novel therapeutic agents. However, several staphylococcal bacteriophages were shown to be inefficient against biofilms. In this study, the previously characterized S. epidermidis-specific Sepunavirus phiIBB-SEP1 (SEP1), which has a broad spectrum and high activity against planktonic cells, was evaluated concerning its efficacy against S. epidermidis biofilms. The in vitro biofilm killing assays demonstrated a reduced activity of the phage. To understand the underlying factors impairing SEP1 inefficacy against biofilms, this phage was tested against distinct planktonic and biofilm-derived bacterial populations. Interestingly, SEP1 was able to lyse planktonic cells in different physiological states, suggesting that the inefficacy for biofilm control resulted from the biofilm 3D structure and the protective effect of the matrix. To assess the impact of the biofilm architecture on phage predation, SEP1 was tested in disrupted biofilms resulting in a 2 orders-of-magnitude reduction in the number of viable cells after 6 h of infection. The interaction between SEP1 and the biofilm matrix was further assessed by the addition of matrix to phage particles. Results showed that the matrix did not inactivate phages nor affected phage adsorption. Moreover, confocal laser scanning microscopy data demonstrated that phage infected cells were less predominant in the biofilm regions where the matrix was more abundant. Our results provide compelling evidence indicating that the biofilm matrix can work as a barrier, allowing the bacteria to be hindered from phage infection.


Assuntos
Biofilmes/crescimento & desenvolvimento , Fagos de Staphylococcus/fisiologia , Staphylococcus epidermidis/virologia , Biomassa , Caudovirales/fisiologia , Contagem de Colônia Microbiana , Matriz Extracelular de Substâncias Poliméricas/ultraestrutura , Matriz Extracelular de Substâncias Poliméricas/virologia , Interações Hospedeiro-Patógeno , Staphylococcus epidermidis/fisiologia
5.
J Glob Antimicrob Resist ; 21: 68-75, 2020 06.
Artigo em Inglês | MEDLINE | ID: mdl-31678321

RESUMO

OBJECTIVES: The aim of this study is to characterize a new bacteriophage able to infect Enterococcus faecalis, and to evaluate its ability to disrupt biofilm. METHODS: The vB_EfaH_EF1TV (EF1TV) host-range was determined by spot test and efficiency of plating using a collection of 15E. faecalis clinical strains. The phage genome was sequenced with a next generation sequencing approach. Anti-biofilm activity was tested by crystal violet method and confocal laser scanning microscopy. Phage-resistant mutants were selected and sequenced to investigate receptors exploited by phage for infection. RESULTS: EF1TV is a newly discoveredE. faecalis phage which belongs to the Herelleviridae family. EF1TV, whose genome is 98% identical to φEF24C, is characterized by a linear dsDNA genome of 143,507 bp with direct terminal repeats of 1,911 bp. The phage is able to infect E. faecalis and shows also the ability to degrade biofilm produced by strains of this species. The results were confirmed by confocal laser scanning microscopy analyzing the biofilm reduction in the same optical field before and after phage infection. CONCLUSIONS: The EF1TV phage shows promising features such as an obligatory lytic nature, an anti-biofilm activity and the absence of integration-related proteins, antibiotic resistance determinants and virulence factors, and therefore could be a promising tool for therapeutic applications.


Assuntos
Biofilmes/crescimento & desenvolvimento , Caudovirales/fisiologia , Enterococcus faecalis/fisiologia , Sequenciamento Completo do Genoma/métodos , Bacteriólise , Enterococcus faecalis/ultraestrutura , Enterococcus faecalis/virologia , Tamanho do Genoma , Genoma Viral , Sequenciamento de Nucleotídeos em Larga Escala , Microscopia Confocal
6.
Meat Sci ; 162: 108023, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-31812064

RESUMO

After High Event Periods, beef subprimals are usually removed from vacuum and treated with antimicrobials. After re-packaging, subprimals are tested to verify the presence of STEC. In this study, bacteriophage and organic acids were applied on beef contaminated with STEC O157:H7 to evaluate the efficiency of industry practices. Beef samples inoculated with STEC were treated with bacteriophage, lactic acid, and peroxyacetic acid and kept under vacuum or aerobic conditions. STEC loads were evaluated 30 min and 6 h after antimicrobial applications. Under aerobic conditions for 30 min and 6 h, phage reduced STEC in beef by approximately 1.4 log whereas organic acids led to a 0.5 log reduction. Under vacuum for 30 min, bacteriophage significantly reduced STEC by 1 log. No effects were observed when samples were treated with organic acids. Under vacuum after 6 h, bacteriophage reduced STEC loads by 1.4 log, lactic acid reduced by 0.6 log, and no effects were observed when peroxyacetic acid was applied.


Assuntos
Anti-Infecciosos/farmacologia , Caudovirales/fisiologia , Escherichia coli O157/efeitos dos fármacos , Escherichia coli O157/virologia , Carne Vermelha/microbiologia , Animais , Bovinos , Manipulação de Alimentos/métodos , Microbiologia de Alimentos , Ácido Láctico/farmacologia , Ácido Peracético/farmacologia , Vácuo
7.
Elife ; 82019 04 04.
Artigo em Inglês | MEDLINE | ID: mdl-30945633

RESUMO

The major coat proteins of dsDNA tailed phages (order Caudovirales) and herpesviruses form capsids by a mechanism that includes active packaging of the dsDNA genome into a precursor procapsid, followed by expansion and stabilization of the capsid. These viruses have evolved diverse strategies to fortify their capsids, such as non-covalent binding of auxiliary 'decoration' (Dec) proteins. The Dec protein from the P22-like phage L has a highly unusual binding strategy that distinguishes between nearly identical three-fold and quasi-three-fold sites of the icosahedral capsid. Cryo-electron microscopy and three-dimensional image reconstruction were employed to determine the structure of native phage L particles. NMR was used to determine the structure/dynamics of Dec in solution. The NMR structure and the cryo-EM density envelope were combined to build a model of the capsid-bound Dec trimer. Key regions that modulate the binding interface were verified by site-directed mutagenesis.


Assuntos
Proteínas do Capsídeo/química , Proteínas do Capsídeo/metabolismo , Capsídeo/metabolismo , Caudovirales/fisiologia , Montagem de Vírus , Capsídeo/ultraestrutura , Caudovirales/ultraestrutura , Microscopia Crioeletrônica , DNA Viral/metabolismo , Imageamento Tridimensional , Espectroscopia de Ressonância Magnética , Ligação Proteica , Multimerização Proteica
8.
FEMS Microbiol Ecol ; 94(10)2018 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-30060135

RESUMO

The majority of phage infection studies are performed in bacteria that are growing exponentially, although in nature, phages usually interact also with non-replicating cells. These stationary-phase cells differ from exponential cells morphologically, physiologically and metabolically. The interaction of a Sep1virus with Staphylococcus epidermidis stationary and exponential phase cells was explored. Phage SEP1 efficiently infected both cell culture states, without the addition of any fresh nutrients to stationary cultures. Phage-host interactions, analysed by flow cytometry, showed stationary-phase cells response to phage immediately after SEP1 addition. Quantitative PCR experiments corroborate that phage genes are expressed within 5 min of contact with stationary phase cells. The increase of host RNA polymerase transcripts in stationary cells suggests that SEP1 infection leads to the upregulation of host machinery fundamental for completion of its lytic life cycle. SEP1 infection and replication process highlights its potential clinical interest targeting stationary phase cells.


Assuntos
Caudovirales/fisiologia , Interações entre Hospedeiro e Microrganismos/genética , Staphylococcus epidermidis/crescimento & desenvolvimento , Staphylococcus epidermidis/virologia , Proteínas de Bactérias/genética , Caudovirales/genética , RNA Polimerases Dirigidas por DNA/genética , Citometria de Fluxo , Expressão Gênica , Staphylococcus epidermidis/genética , Proteínas Virais/genética
9.
J Bacteriol ; 200(19)2018 10 01.
Artigo em Inglês | MEDLINE | ID: mdl-30012730

RESUMO

Bacteriophage 7-7-1, a member of the family Myoviridae, infects the soil bacterium Agrobacterium sp. strain H13-3. Infection requires attachment to actively rotating bacterial flagellar filaments, with flagellar number, length, and rotation speed being important determinants for infection efficiency. To identify the secondary receptor(s) on the cell surface, we isolated motile, phage-resistant Agrobacterium sp. H13-3 transposon mutants. Transposon insertion sites were pinpointed using arbitrary primed PCR and bioinformatics analyses. Three genes were recognized, whose corresponding proteins had the following computationally predicted functions: AGROH133_07337, a glycosyltransferase; AGROH133_13050, a UDP-glucose 4-epimerase; and AGROH133_08824, an integral cytoplasmic membrane protein. The first two gene products are part of the lipopolysaccharide (LPS) synthesis pathway, while the last is predicted to be a relatively small (13.4-kDa) cytosolic membrane protein with up to four transmembrane helices. The phenotypes of the transposon mutants were verified by complementation and site-directed mutagenesis. Additional characterization of motile, phage-resistant mutants is also described. Given these findings, we propose a model for Agrobacterium sp. H13-3 infection by bacteriophage 7-7-1 where the phage initially attaches to the flagellar filament and is propelled down toward the cell surface by clockwise flagellar rotation. The phage then attaches to and degrades the LPS to reach the outer membrane and ejects its DNA into the host using its syringe-like contractile tail. We hypothesize that the integral membrane protein plays an important role in events following viral DNA ejection or in LPS processing and/or deployment. The proposed two-step attachment mechanism may be conserved among other flagellotropic phages infecting Gram-negative bacteria.IMPORTANCE Flagellotropic bacteriophages belong to the tailed-phage order Caudovirales, the most abundant phages in the virome. While it is known that these viruses adhere to the bacterial flagellum and use flagellar rotation to reach the cell surface, their infection mechanisms are poorly understood. Characterizing flagellotropic-phage-host interactions is crucial to understanding how microbial communities are shaped. Using a transposon mutagenesis approach combined with a screen for motile, phage-resistant mutants, we identified lipopolysaccharides as the secondary cell surface receptor for phage 7-7-1. This is the first cell surface receptor identified for flagellotropic phages. One hypothetical membrane protein was also recognized as essential for infection. These new findings, together with previous results, culminated in an infection model for phage 7-7-1.


Assuntos
Agrobacterium/virologia , Proteínas de Bactérias/metabolismo , Caudovirales/fisiologia , Flagelos/metabolismo , Lipopolissacarídeos/metabolismo , Receptores Virais/metabolismo , Agrobacterium/genética , Proteínas de Bactérias/genética , Elementos de DNA Transponíveis , DNA Viral/genética , Flagelos/genética , Teste de Complementação Genética , Mutagênese , Receptores Virais/genética , Ligação Viral
10.
Genes Cells ; 23(7): 528-536, 2018 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-29767456

RESUMO

Tailed bacteriophages (Caudovirales) are divided into three families: Myoviridae with long contractile tails, Siphoviridae with long noncontractile tails and Podoviridae with short noncontractile tails. All have an icosahedral head with a portal vertex connected to a neck structure followed by a tail. Bacteriophage Mu belongs to the Myoviridae family. Herein, the gp29 portal subunit and neck subunits gp35, gp36 and gp37 of the Mu phage were purified to elucidate their arrangement in the neck. Both gp29 and gp36 were monomeric in solution, like the corresponding subunits of Podoviridae P22 and Siphoviridae SPP1. X-ray crystal structure of gp36 showed structural similarity to neck subunits of Siphoviridae and Podoviridae. The gp36 structure has a characteristic aromatic hydrophobic core, and the structure of the ring form of the Mu phage connector deduced from the Siphoviridae and Podoviridae connector showed that this feature builds the contact surface between gp36 subunits. Structural comparison with the neck of Siphoviridae and Podoviridae also implies direct interaction between gp36 and gp29. Because gp35 and gp36 form a stable complex, we predict that the head-portal ring (gp29), the connector complex (gp36 and gp35), the tail terminator (gp37) and the tube (gp40) are arranged in the Mu phage neck in this order.


Assuntos
Myoviridae/ultraestrutura , Podoviridae/ultraestrutura , Siphoviridae/ultraestrutura , Bacteriófagos/fisiologia , Caudovirales/fisiologia , Caudovirales/ultraestrutura , Cristalografia por Raios X/métodos , DNA Viral , Genoma Viral , Myoviridae/fisiologia , Podoviridae/fisiologia , Conformação Proteica , Siphoviridae/fisiologia
11.
Biol Lett ; 12(5)2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-27194288

RESUMO

Antibiotic resistance has wide-ranging effects on bacterial phenotypes and evolution. However, the influence of antibiotic resistance on bacterial responses to parasitic viruses remains unclear, despite the ubiquity of such viruses in nature and current interest in therapeutic applications. We experimentally investigated this by exposing various Escherichia coli genotypes, including eight antibiotic-resistant genotypes and a mutator, to different viruses (lytic bacteriophages). Across 960 populations, we measured changes in population density and sensitivity to viruses, and tested whether variation among bacterial genotypes was explained by their relative growth in the absence of parasites, or mutation rate towards phage resistance measured by fluctuation tests for each phage. We found that antibiotic resistance had relatively weak effects on adaptation to phages, although some antibiotic-resistance alleles impeded the evolution of resistance to phages via growth costs. By contrast, a mutator allele, often found in antibiotic-resistant lineages in pathogenic populations, had a relatively large positive effect on phage-resistance evolution and population density under parasitism. This suggests costs of antibiotic resistance may modify the outcome of phage therapy against pathogenic populations previously exposed to antibiotics, but the effects of any co-occurring mutator alleles are likely to be stronger.


Assuntos
Antibacterianos/farmacologia , Caudovirales/fisiologia , Farmacorresistência Bacteriana/genética , Escherichia coli/virologia , Evolução Biológica , Escherichia coli/genética , Genótipo , Mutação , Taxa de Mutação
12.
Viruses ; 7(12): 6424-40, 2015 Dec 08.
Artigo em Inglês | MEDLINE | ID: mdl-26670244

RESUMO

Bacteriophage T5, a Siphovirus belonging to the order Caudovirales, has a flexible, three-fold symmetric tail, to which three L-shaped fibres are attached. These fibres recognize oligo-mannose units on the bacterial cell surface prior to infection and are composed of homotrimers of the pb1 protein. Pb1 has 1396 amino acids, of which the carboxy-terminal 133 residues form a trimeric intra-molecular chaperone that is auto-proteolyzed after correct folding. The structure of a trimer of residues 970-1263 was determined by single anomalous dispersion phasing using incorporated selenomethionine residues and refined at 2.3 Å resolution using crystals grown from native, methionine-containing, protein. The protein inhibits phage infection by competition. The phage-distal receptor-binding domain resembles a bullet, with the walls formed by partially intertwined beta-sheets, conferring stability to the structure. The fold of the domain is novel and the topology unique to the pb1 structure. A site-directed mutant (Ser1264 to Ala), in which auto-proteolysis is impeded, was also produced, crystallized and its 2.5 Å structure solved by molecular replacement. The additional chaperone domain (residues 1263-1396) consists of a central trimeric alpha-helical coiled-coil flanked by a mixed alpha-beta domain. Three long beta-hairpin tentacles, one from each chaperone monomer, extend into long curved grooves of the bullet-shaped domain. The chaperone-containing mutant did not inhibit infection by competition.


Assuntos
Chaperonas Moleculares/química , Siphoviridae/química , Proteínas da Cauda Viral/química , Caudovirales/química , Caudovirales/fisiologia , Cristalografia por Raios X , Modelos Moleculares , Chaperonas Moleculares/genética , Proteínas Mutantes/química , Proteínas Mutantes/genética , Conformação Proteica , Siphoviridae/fisiologia , Proteínas da Cauda Viral/genética , Ligação Viral
13.
Elife ; 3: e03125, 2014 Aug 29.
Artigo em Inglês | MEDLINE | ID: mdl-25171894

RESUMO

Viruses modulate microbial communities and alter ecosystem functions. However, due to cultivation bottlenecks, specific virus-host interaction dynamics remain cryptic. In this study, we examined 127 single-cell amplified genomes (SAGs) from uncultivated SUP05 bacteria isolated from a model marine oxygen minimum zone (OMZ) to identify 69 viral contigs representing five new genera within dsDNA Caudovirales and ssDNA Microviridae. Infection frequencies suggest that ∼1/3 of SUP05 bacteria is viral-infected, with higher infection frequency where oxygen-deficiency was most severe. Observed Microviridae clonality suggests recovery of bloom-terminating viruses, while systematic co-infection between dsDNA and ssDNA viruses posits previously unrecognized cooperation modes. Analyses of 186 microbial and viral metagenomes revealed that SUP05 viruses persisted for years, but remained endemic to the OMZ. Finally, identification of virus-encoded dissimilatory sulfite reductase suggests SUP05 viruses reprogram their host's energy metabolism. Together, these results demonstrate closely coupled SUP05 virus-host co-evolutionary dynamics with the potential to modulate biogeochemical cycling in climate-critical and expanding OMZs.


Assuntos
Caudovirales/genética , Gammaproteobacteria/genética , Metagenoma/genética , Microviridae/genética , Colúmbia Britânica , Caudovirales/metabolismo , Caudovirales/fisiologia , DNA de Cadeia Simples/genética , Ecologia , Ecossistema , Evolução Molecular , Gammaproteobacteria/classificação , Gammaproteobacteria/virologia , Genoma Bacteriano/genética , Genoma Viral/genética , Genômica , Interações Hospedeiro-Patógeno , Microviridae/metabolismo , Microviridae/fisiologia , Oxigênio/metabolismo , Filogenia , Água do Mar/química , Água do Mar/microbiologia , Água do Mar/virologia , Enxofre/metabolismo
14.
Appl Environ Microbiol ; 80(7): 2216-28, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24487530

RESUMO

Pseudomonas syringae pv. actinidiae is a reemerging pathogen which causes bacterial canker of kiwifruit (Actinidia sp.). Since 2008, a global outbreak of P. syringae pv. actinidiae has occurred, and in 2010 this pathogen was detected in New Zealand. The economic impact and the development of resistance in P. syringae pv. actinidiae and other pathovars against antibiotics and copper sprays have led to a search for alternative management strategies. We isolated 275 phages, 258 of which were active against P. syringae pv. actinidiae. Extensive host range testing on P. syringae pv. actinidiae, other pseudomonads, and bacteria isolated from kiwifruit orchards showed that most phages have a narrow host range. Twenty-four were analyzed by electron microscopy, pulse-field gel electrophoresis, and restriction digestion. Their suitability for biocontrol was tested by assessing stability and the absence of lysogeny and transduction. A detailed host range was performed, phage-resistant bacteria were isolated, and resistance to other phages was examined. The phages belonged to the Caudovirales and were analyzed based on morphology and genome size, which showed them to be representatives of Myoviridae, Podoviridae, and Siphoviridae. Twenty-one Myoviridae members have similar morphologies and genome sizes yet differ in restriction patterns, host range, and resistance, indicating a closely related group. Nine of these Myoviridae members were sequenced, and each was unique. The most closely related sequenced phages were a group infecting Pseudomonas aeruginosa and characterized by phages JG004 and PAK_P1. In summary, this study reports the isolation and characterization of P. syringae pv. actinidiae phages and provides a framework for the intelligent formulation of phage biocontrol agents against kiwifruit bacterial canker.


Assuntos
Caudovirales/isolamento & purificação , DNA Viral/genética , Especificidade de Hospedeiro , Fagos de Pseudomonas/isolamento & purificação , Pseudomonas syringae/virologia , Vírion/ultraestrutura , Actinidia/microbiologia , Caudovirales/genética , Caudovirales/fisiologia , Caudovirales/ultraestrutura , DNA Viral/química , Eletroforese em Gel de Campo Pulsado , Dados de Sequência Molecular , Nova Zelândia , Doenças das Plantas/microbiologia , Polimorfismo de Fragmento de Restrição , Fagos de Pseudomonas/genética , Fagos de Pseudomonas/fisiologia , Fagos de Pseudomonas/ultraestrutura , Análise de Sequência de DNA
15.
Virology ; 434(2): 210-21, 2012 Dec 20.
Artigo em Inglês | MEDLINE | ID: mdl-23131350

RESUMO

Molecular piracy is a biological phenomenon in which one replicon (the pirate) uses the structural proteins encoded by another replicon (the helper) to package its own genome and thus allow its propagation and spread. Such piracy is dependent on a complex web of interactions between the helper and the pirate that occur at several levels, from transcriptional control to macromolecular assembly. The best characterized examples of molecular piracy are from the E. coli P2/P4 system and the S. aureus SaPI pathogenicity island/helper system. In both of these cases, the pirate element is mobilized and packaged into phage-like transducing particles assembled from proteins supplied by a helper phage that belongs to the Caudovirales order of viruses (tailed, dsDNA bacteriophages). In this review we will summarize and compare the processes that are involved in molecular piracy in these two systems.


Assuntos
Caudovirales/fisiologia , Montagem de Vírus , Replicação Viral , Caudovirales/genética , Escherichia coli/virologia , Vírus Auxiliares/genética , Vírus Auxiliares/fisiologia , Staphylococcus aureus/virologia
16.
J Microbiol Methods ; 91(3): 514-9, 2012 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-23041492

RESUMO

The bacteriophage, φPto-bp6g, exhibited strong bactericidal activity against Pseudomonas tolaasii, the bacterium that causes brown blotch disease in cultivated mushrooms. Analysis of phage morphology with an electron microscope revealed that φPto-bp6g contains an icosahedral head and a long tail, which is classified as the family of Siphoviridae. The phage was observed to lyse P. tolaasii in the broth about 4h after inoculation, indicating a putative lytic pathway exists during bacterial growth. The whole genome of φPto-bp6g was completely sequenced, with a length of 26,499 bp and a G+C content of 42.7%. A total of 77 open reading frames (ORFs) as putative coding sequences were identified and annotated, whereas 43 ORFs possessed no homologs. Proteins of several ORFs showed similarity with proteins of a diverse group of phages, including Siphoviridae (5 ORFs), Myoviridae (11 ORFs), and Podoviridae (4 ORFs). Phage proteins were grouped into three categories based on their predicted functions: (i) DNA replication and nucleotide metabolism, (ii) phage particle formation, and (iii) host interaction. Since there is no identified gene encoding integrase and toxins in phage genome, phage φPto-bp6g could be potentially applicable as a safe biological control reagent against brown blotch disease in mushroom cultivation.


Assuntos
Agaricales/crescimento & desenvolvimento , Bacteriófagos/isolamento & purificação , Bacteriófagos/fisiologia , Caudovirales/isolamento & purificação , Caudovirales/fisiologia , Pseudomonas/virologia , Bacteriófagos/classificação , Bacteriófagos/genética , Composição de Bases , Caudovirales/classificação , Caudovirales/genética , Efeito Citopatogênico Viral , Genoma Viral , Dados de Sequência Molecular , Fases de Leitura Aberta , Pseudomonas/fisiologia
17.
BMC Microbiol ; 12: 156, 2012 Jul 28.
Artigo em Inglês | MEDLINE | ID: mdl-22838726

RESUMO

BACKGROUND: Acinetobacter baumannii, a significant nosocomial pathogen, has evolved resistance to almost all conventional antimicrobial drugs. Bacteriophage therapy is a potential alternative treatment for multidrug-resistant bacterial infections. In this study, one lytic bacteriophage, ZZ1, which infects A. baumannii and has a broad host range, was selected for characterization. RESULTS: Phage ZZ1 and 3 of its natural hosts, A. baumanni clinical isolates AB09V, AB0902, and AB0901, are described in this study. The 3 strains have different sensitivities to ZZ1, but they have the same sensitivity to antibiotics. They are resistant to almost all of the antibiotics tested, except for polymyxin. Several aspects of the life cycle of ZZ1 were investigated using the sensitive strain AB09V under optimal growth conditions. ZZ1 is highly infectious with a short latent period (9 min) and a large burst size (200 PFU/cell). It exhibited the most powerful antibacterial activity at temperatures ranging from 35°C to 39°C. Moreover, when ZZ1 alone was incubated at different pHs and different temperatures, the phage was stable over a wide pH range (4 to 9) and at extreme temperatures (between 50°C and 60°C). ZZ1 possesses a 100-nm icosahedral head containing double-stranded DNA with a total length of 166,682 bp and a 120-nm long contractile tail. Morphologically, it could be classified as a member of the Myoviridae family and the Caudovirales order. Bioinformatic analysis of the phage whole genome sequence further suggested that ZZ1 was more likely to be a new member of the Myoviridae phages. Most of the predicted ORFs of the phage were similar to the predicted ORFs from other Acinetobacter phages. CONCLUSION: The phage ZZ1 has a relatively broad lytic spectrum, high pH stability, strong heat resistance, and efficient antibacterial potential at body temperature. These characteristics greatly increase the utility of this phage as an antibacterial agent; thus, it should be further investigated.


Assuntos
Acinetobacter baumannii/virologia , Bacteriófagos/isolamento & purificação , Bacteriófagos/fisiologia , Infecções por Acinetobacter/microbiologia , Acinetobacter baumannii/efeitos dos fármacos , Acinetobacter baumannii/isolamento & purificação , Antibacterianos/farmacologia , Bacteriófagos/genética , Bacteriófagos/ultraestrutura , Caudovirales/genética , Caudovirales/isolamento & purificação , Caudovirales/fisiologia , Caudovirales/ultraestrutura , DNA Viral/química , DNA Viral/genética , Farmacorresistência Bacteriana Múltipla , Ordem dos Genes , Genoma Viral , Especificidade de Hospedeiro , Humanos , Concentração de Íons de Hidrogênio , Viabilidade Microbiana/efeitos dos fármacos , Viabilidade Microbiana/efeitos da radiação , Dados de Sequência Molecular , Myoviridae/genética , Myoviridae/isolamento & purificação , Myoviridae/fisiologia , Myoviridae/ultraestrutura , Fases de Leitura Aberta , Análise de Sequência de DNA , Temperatura , Vírion/ultraestrutura
18.
Virus Genes ; 45(2): 380-8, 2012 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-22710996

RESUMO

The Nosticoida limicola filamentous morphotype is held responsible for incidents of bulking and foaming in activated sludge. Members of the actinobacterial N. limicola II have been isolated and grown in pure culture and shown to belong to the genus Tetrasphaera, and play an important role in phosphorus removal. This article describes the isolation and genomic characterization of a phage able to lyse Tetrasphaera jenkinsii, TJE1. This lytic phage is a member of the Caudovirales specific for T. jenkinsii. The complete DNA sequence of TJE1 phage revealed it to have a circularly permuted genome (49,219 bp) with 66 putative open reading frames, a single transcriptional terminator, and 6 pairs of inverted repeats within the genome sequence. The TJE1 phage genome is organised into a modular gene structure, but shares only limited sequence identity with other phages so far described.


Assuntos
Actinomycetales/virologia , Bacteriófagos/genética , Caudovirales/genética , DNA Viral/química , DNA Viral/genética , Genoma Viral , Bacteriólise , Bacteriófagos/classificação , Bacteriófagos/isolamento & purificação , Bacteriófagos/fisiologia , Caudovirales/classificação , Caudovirales/isolamento & purificação , Caudovirales/fisiologia , Genes Virais , Sequências Repetidas Invertidas , Dados de Sequência Molecular , Fases de Leitura Aberta , Análise de Sequência de DNA , Esgotos/microbiologia , Terminação da Transcrição Genética
19.
Environ Microbiol ; 14(8): 1844-54, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22118225

RESUMO

Bacteriophages have been known to be present in the gut for many years, but studies of relationships between these viruses and their hosts in the intestine are still in their infancy. We isolated three bacteriophages specific for an enteroaggregative O104:H4 Escherichia coli (EAEC) strain responsible for diarrhoeal diseases in humans. We studied the replication of these bacteriophages in vitro and in vivo in a mouse model of gut colonization. Each bacteriophage was able to replicate in vitro in both aerobic and anaerobic conditions. Each bacteriophage individually reduced biofilms formed on plastic pegs and a cocktail of the three bacteriophages was found to be more efficient. The cocktail was also able to infect bacterial aggregates formed on the surface of epithelial cells. In the mouse intestine, bacteriophages replicated for at least 3 weeks, provided the host was present, with no change in host levels in the faeces. This model of stable and continuous viral replication provides opportunities for studying the long-term coevolution of virulent bacteriophages with their hosts within a mammalian polymicrobial ecosystem.


Assuntos
Bacteriófagos/fisiologia , Escherichia coli/virologia , Animais , Bacteriófagos/classificação , Bacteriófagos/isolamento & purificação , Bacteriófagos/ultraestrutura , Biofilmes , Caudovirales/classificação , Caudovirales/isolamento & purificação , Caudovirales/fisiologia , Caudovirales/ultraestrutura , Fezes/microbiologia , Fezes/virologia , Especificidade de Hospedeiro , Intestinos/microbiologia , Intestinos/virologia , Camundongos , Replicação Viral
20.
Microbiol Immunol ; 53(5): 301-4, 2009 May.
Artigo em Inglês | MEDLINE | ID: mdl-19457172

RESUMO

Due to multiple-drug resistant bacteria, phage therapy is being revisited. Although most animal experiments focus on therapeutic efficacy, the blood clearance kinetics of phages have not been well described. For further development of an efficient therapeutic strategy, information on phage blood kinetics is important. In this study, time-course concentration changes in peripheral blood of healthy and neutropenic mice were measured using four therapeutic phages (phiMR11, KPP10, phiEF24C, and KEP10). The results showed a two- to three-day rapid phage clearance, which fits a two-compartment model.


Assuntos
Infecções Bacterianas/terapia , Sangue/virologia , Caudovirales/química , Neutropenia/sangue , Neutropenia/terapia , Animais , Bactérias/virologia , Caudovirales/fisiologia , Modelos Animais de Doenças , Feminino , Humanos , Injeções Intraperitoneais , Cinética , Camundongos , Camundongos Endogâmicos BALB C , Neutropenia/induzido quimicamente
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