Biogeography of the cyanobacterium Raphidiopsis (Cylindrospermopsis) raciborskii: Integrating genomics, phylogenetic and toxicity data.

Raphidiopsis (Cylindrospermopsis) raciborskii, a globally distributed bloom-forming cyanobacterium, produces either the cytotoxin cylindrospermopsin (CYL) in Oceania, Asia and Europe or the neurotoxin saxitoxin (STX) and analogues (paralytic shellfish poison, PSP) in South America (encoded by sxt genetic cluster) and none of them in Africa. Nevertheless, this particular geographic pattern is usually overlooked in current hypotheses about the species dispersal routes. Here, we combined genomics, phylogenetic analyses, toxicity data and a literature survey to unveil the evolutionary history and spread of the species. Phylogenies based on 354 orthologous genes from all the available genomes and ribosomal ITS sequences of the taxon showed two well-defined clades: the American, having the PSP producers; and the Oceania/Europe/Asia, including the CYL producers. We propose central Africa as the original dispersion center (non-toxic populations), reaching North Africa and North America (in former Laurasia continent). The ability to produce CYL probably took place in populations that advanced to sub-Saharan Africa and then to Oceania and South America. According to the genomic context of the sxt cluster found in PSP-producer strains, this trait was acquired once by horizontal transfer in South America, where the ability to produce CYL was lost.

A Greek Cylindrospermopsis raciborskii strain: Missing link in tropic invader's phylogeography tale.

The cyanobacterium Cylindrospermopsis raciborskii represents a challenge for researchers and it is extensively studied for its toxicity and invasive behaviour, which is presumably enhanced by global warming. Biogeography studies indicate a tropical origin for this species, with Greece considered as the expansion route of C. raciborskii in Europe. The widening of its geographic distribution and the isolation of strains showing high optimum growth temperature underline its ecological heterogeneity, suggesting the existence of different ecotypes. The dominance of species like C. raciborskii along with their ecotoxicology and potential human risk related problems, render the establishment of a clear phylogeography model essential. In the context of the present study, the characterization of Cylindrospermopsis raciborskii TAU-MAC 1414 strain, isolated from Lake Karla, with respect to its phylogeography and toxic potential, is attempted. Our research provides new insights on the origin of C. raciborskii in the Mediterranean region; C. raciborskii expanded in Mediterranean from North America, whilst the rest of the European strains may originate from Asia and Australia. Microcystin synthetase genes, phylogenetic closely related with Microcystis strains, were also present in C. raciborskii TAU-MAC 1414. We were unable to unambiguously confirm the presence of MC-LR, using LC-MS/MS. Our results are shedding light on the expansion and distribution of C. raciborskii, whilst they pose further questions on the toxic capacity of this species.

Variability in a permanent cyanobacterial bloom: species-specific responses to environmental drivers.

Cyanobacterial blooms are characterized by intense growth of one or few species that will dominate the phytoplankton community for periods of few months to an entire year or more. However, even during persistent blooms, important seasonal changes among dominant species can be observed. Pampulha reservoir is a tropical eutrophic reservoir presenting permanent blooms. To identify the main species in this environment, a closer analysis performed by microscopy and 16S-rRNA DGGE revealed Cylindrospermopsis raciborskii as highly dominant throughout the year. The second most abundant group comprised species belonging to the Microcystis genus. They followed a well-defined seasonal pattern described by interesting species-specific ecological trends. During thermal stratification in the rainy/warmer season, C. raciborskii dominated in the water column, while Microcystis spp. were abundant at the end of the dry season, a period characterized by higher total phosphorus concentrations. Phylogenetic analyses confirmed the two dominant taxa and their seasonal trends. The results showed that cyanobacteria major controlling factors were strongly species dependent, shifting from physical/climate related (stratification) to more chemical driven (nutrients/eutrophication). Identifying these drivers is therefore essential for the understanding of the bloom dynamics and the real risks associated with each species, and to eventually adopt the most appropriate and effective management strategies.

Comparison of Quantitative PCR and Droplet Digital PCR Multiplex Assays for Two Genera of Bloom-Forming Cyanobacteria, Cylindrospermopsis and Microcystis.

The increasing occurrence of harmful cyanobacterial blooms, often linked to deteriorated water quality and adverse public health effects, has become a worldwide concern in recent decades. The use of molecular techniques such as real-time quantitative PCR (qPCR) has become increasingly popular in the detection and monitoring of harmful cyanobacterial species. Multiplex qPCR assays that quantify several toxigenic cyanobacterial species have been established previously; however, there is no molecular assay that detects several bloom-forming species simultaneously. Microcystis and Cylindrospermopsis are the two most commonly found genera and are known to be able to produce microcystin and cylindrospermopsin hepatotoxins. In this study, we designed primers and probes which enable quantification of these genera based on the RNA polymerase C1 gene for Cylindrospermopsis species and the c-phycocyanin beta subunit-like gene for Microcystis species. Duplex assays were developed for two molecular techniques-qPCR and droplet digital PCR (ddPCR). After optimization, both qPCR and ddPCR assays have high linearity and quantitative correlations for standards. Comparisons of the two techniques showed that qPCR has higher sensitivity, a wider linear dynamic range, and shorter analysis time and that it was more cost-effective, making it a suitable method for initial screening. However, the ddPCR approach has lower variability and was able to handle the PCR inhibition and competitive effects found in duplex assays, thus providing more precise and accurate analysis for bloom samples.

Efeito do herbicida glifosato sobre o crescimento e produção de metabólitos secundários em Microcystis aeruginosa e Cylindrospermopsis raciborskii / The effect of herbicide glyphosate on the growth and of secondary metabolites production in Microcystis aeruginosa and Cylindrospermopsis raciborskii

ianobactérias, conhecidas por sua habilidade de sintetizar metabólitos com ação tóxica, podem se tornar dominantes em águas com altas concentrações de nitrogênio e fósforo. Embora a toxicidade do glifosato, o herbicida mais usado no mundo, em alguns organismos aquáticos seja conhecida, poucos estudos abordam o efeito desse composto sobre a produção de metabólitos secundários por cianobactérias. O objetivo deste trabalho foi avaliar a influência de diferentes concentrações de glifosato (produto técnico) sobre o crescimento e produção de cianotoxinas e microgininas pelas cepas brasileiras Microcystis aeruginosa LTPNA 08 e Cylindrospermopsis raciborskii CENA 302. Na presença de 15 mg/L de glifosato, o crescimento e a produção de toxinas pela M. aeruginosa foram reduzidos e de microgininas significativamente aumentada. Já a C. raciborskii, quando exposta à 20 mg/L de glifosato teve seu crescimento e síntese de clorofila-a, carotenoides e saxitoxinas aumentados. Concentrações superiores a 20 e 30 mg/L impediram o crescimento celular das cepas LTPNA 08 e CENA 302, respectivamente. A análise de ácidos graxos mostrou perfis bastante distintos entre as cepas. Na cepa LTPNA 08, enquanto que na presença de 10 mg/L de glifosato ocorreu diminuição do teor do ácido linoleico, o ácido estearidônico foi aumentado. Nenhuma das concentrações testadas promoveu alteração sobre o perfil de ácidos graxos da cepa CENA 302. A toxicidade de 5 produtos formulados a base de glifosato foi comparada ao produto técnico em ambas as linhagens-teste. Observou-se uma resistência distinta entre as cepas e toxicidade também variável entre as formulações comerciais. Sendo assim, diante da elevada resistência das cianobactérias M. aeruginosa e C. raciborskii ao glifosato, e considerando-se a elevada interferência antrópica através das práticas agrícolas, pode-se inferir que o uso excessivo e frequente desse herbicida é capaz de estimular o crescimento e dominância desses organismos, podendo modificar a estrutura e funcionalidade de ecossistemas aquáticos

Cyanobacteria, known for their ability to synthesize toxic metabolites, can become dominant in water bodies with high concentrations of nitrogen and phosphorus. Although the toxicity of glyphosate, the most widely used herbicide in the world, in some aquatic organisms is well known, few studies address the effect of this compound on the production of secondary metabolites by cyanobacteria. The aim of this study was to evaluate the influence of different concentrations the herbicide glyphosate (technical grade) on growth and production of cyanotoxins and microginins by Brazilian strains of Microcystis aeruginosa LTPNA 08 and Cylindrospermopsis raciborskii CENA 302. In the presence of 15 mg/L of glyphosate, growth and toxin production by M. aeruginosa were reduced and microginins cell quota significantly increased. The C. raciborskii strain, when exposed to 20 mg/L of glyphosate, had the growth, and chlorophyll-a, carotenoids and saxitoxins production increased. Concentrations above 20 and 30 mg/L prevented cell growth of LTPNA 08 and CENA 302 strains, respectively. Fatty acid analysis showed distinct profiles among the strains. When exposed to 10 mg/L of glyphosate, a decrease in the linoleic acid and increase in stearidonic acid content were observed in M. aeruginosa LTPNA 08 strain. None of the tested concentrations of glyphosate promoted change on the fatty acid profile of CENA 302 strain. The toxicity of 5 glyphosate formulated products was compared to technical product to both strains. There was a distinct resistance among strains and also a variable toxicity among formulated products. Thus, given the high glyphosate resistance of M. aeruginosa and C. raciborskii cyanobacteria, and considering the high anthropogenic interference through agri cultural practices, it can be inferred that excessive and frequent use of this herbicide is able to stimulate growth and dominance of these organisms, which may modify the structure and function of aquatic ecosystems

Phylogeny and biogeography of the invasive cyanobacterium Cylindrospermopsis raciborskii.

Cylindrospermopsis raciborskii is a toxic cyanobacterium with an invasive nature. The species is found in all the main continents but its origin and dispersal routes on a worldwide perspective remain yet mostly unknown. In this study, 27 isolates of C. raciborskii gathered worldwide have been used for an in-deep phylogenetic analyses with a concatenated system of three genetic markers (16 rRNA, 16S-23S ITS larger subunit, and RNA polymerase rpoC1) comprehending 3,188 bp. Our results provide support for an origin of C. raciborskii in the American continent. Dispersal routes included afterward a spread into the African continent and then Asia and Australia, being Europe the last continent to be colonized by this species. Our phylogenetic inferences suggest that C. raciborskii seem to have a well-defined dispersal behavior with a well-established population structure around the world.

The effect of pyrogallic acid on growth, oxidative stress, and gene expression in Cylindrospermopsis raciborskii (Cyanobacteria).

In order to investigate the effect of the allelopathic compound pyrogallic acid on Cylindrospermopsis raciborskii F2, the impact on growth, oxidative stress and expression of the psbA, grpE, fabZ, recA, cmpA, ftsZ and cyrJ genes were studied. The results indicated significant decreases in Chl a and cell number following a 24-h incubation with 4 mg L(-1) pyrogallic acid. Additionally, malodialdehyde content, superoxide dismutase activity and catalase activity were enhanced following treatment with 2 and 4 mg L(-1) pyrogallic acid. Expressions of the genes psbA, grpE, fabZ, recA and cyrJ were significantly up-regulated following exposure to 4 mg L(-1) pyrogallic acid, while no changes were observed with concentrations of 1 or 2 mg L(-1). Expression of cmpA was significantly down-regulated following treatment with the lowest tested concentration of pyrogallic acid (1 mg L(-1)), while ftsZ was only significantly down-regulated with concentrations of 2 and 4 mg L(-1). These results suggest that photosynthesis inhibition and oxidative damage are important modes of action for the allelopathic effect of pyrogallic acid on C. raciborskii.

Genetic variability of the invasive cyanobacteria Cylindrospermopsis raciborskii from Bir M'cherga reservoir (Tunisia).

Cylindrospermopsis raciborskii is an invasive freshwater cyanobacteria of tropical origin, also found in temperate regions. Due to its known ability to produce potent toxins, such as cylindrospermopsin and the paralytic shellfish poisoning, this species is of major concern from a water quality perspective. This study presents a genetic characterization of four C. raciborskii strains isolated from the Bir M'cherga Tunisian reservoir. The toxicity assessment was investigated via molecular biology tools, which suggested that all the isolated strains were not producing cylindrospermopsin, saxitoxin, or microcystin. This result was further confirmed by HPLC and MALDI-TOF analyses. However, we report for the first time in C. raciborskii the presence of mcyA and mcyE, two segments of the microcystin synthetase mcy cluster. All the strains were identified taxonomically based on the 16S rRNA sequences, and their phylogenetic relationships were assessed using the rpoC1 region. Tunisian strains formed a distinct clade separated from the other African strains.

Genetic diversity and structure of the invasive toxic cyanobacterium Cylindrospermopsis raciborskii.

Strains of the invasive toxic cyanobacteria Cylindrospermopsis raciborskii were genetically evaluated with four genetic markers encompassing in total 2.9 kb (16S rRNA, ITS longer spacer, ITS shorter spacer and rpoC1) to assess the phylogenetic relationships, genetic variation and population differentiation of the species across all five continents. The phylogenetic analysis showed that the C. raciborskii strains grouped into three well-supported distinct clusters: (I) European (II) African/American, and (III) Asian/Australian. The European group presented a high genetic similarity with the Asian and the Australian isolates than with the African and American isolates. Several Portuguese isolates were analyzed (n = 7) and revealed a low genetic differentiation with little geographical structure. The genetic distance among groups and phylogenetic relationships obtained in this study suggest that the recent invasion of C. raciborskii in Portuguese and other European temperate environments could have had its origin in the Asian and/or Australian continents.

Development of a hierarchical oligonucleotide primer extension assay for the qualitative and quantitative analysis of Cylindrospermopsis raciborskii subspecies in freshwater.

A newly-developed molecular method, hierarchical oligonucleotide primer extension (HOPE), was used to analyze various groups within the species Cylindrospermopsis raciborskii. PCR-amplified internally transcribed spacer sequences of 16S-23S from C. raciborskii in reservoir samples of Taiwan and Kinmen were examined. One of eight sequevars in the clone libraries was closely related to strains obtained from the European continent, while the others, designated of Taiwan (TW) type, belonged to a novel group. Optimized HOPE analyses showed that C. raciborskii distributed in different reservoirs with a relative abundance of 0.5% to 76.4% in the cyanobacterial communities. They further detected the concurrence of three C. raciborskii subpopulations, in which European and TW groups were predominant. The TW sequevars accounted for greater than 87.5% of C. raciborskii in the reservoirs Taihu, Yangmin, Jinsha, and Mudan, while this decreased to 55.4-58.1%, accompanied by a proportional increase of the European group, in reservoirs Lantan and Renyi. These findings revealed the complex subspecies structure within C. raciborskii and the subspecies dynamics associated with geographic locations.

Toxicity phenotype does not correlate with phylogeny of Cylindrospermopsis raciborskii strains.

Cylindrospermopsis raciborskii is a species of freshwater, bloom-forming cyanobacterium. C. raciborskii produces toxins, including cylindrospermopsin (hepatotoxin) and saxitoxin (neurotoxin), although non toxin-producing strains are also observed. In spite of differences in toxicity, C. raciborskii strains comprise a monophyletic group, based upon 16S rRNA gene sequence identities (greater than 99%). We performed phylogenetic analyses; 16S rRNA gene and 16S-23S rRNA gene internally transcribed spacer (ITS-1) sequence comparisons, and genomic DNA restriction fragment length polymorphism (RFLP), resolved by pulsed-field gel electrophoresis (PFGE), of strains of C. raciborskii, obtained mainly from the Australian phylogeographic cluster. Our results showed no correlation between toxic phenotype and phylogenetic association in the Australian strains. Analyses of the 16S rRNA gene and the respective ITS-1 sequences (long L, and short S) showed an independent evolution of each ribosomal operon. The genes putatively involved in the cylindrospermopsin biosynthetic pathway were present in one locus and only in the hepatotoxic strains, demonstrating a common genomic organization for these genes and the absence of mutated or inactivated biosynthetic genes in the non toxic strains. In summary, our results support the hypothesis that the genes involved in toxicity may have been transferred as an island by processes of gene lateral transfer, rather than convergent evolution.

Genetic diversity of Cylindrospermopsis strains (cyanobacteria) isolated from four continents.

The genetic diversity of Cylindrospermopsis strains (cyanobacteria) was examined using mainly the 16S-23S internally transcribed spacer (ITS1) sequences. Strains were grouped in three clusters: (i) America, (ii) Europe, and (iii) Africa and Australia. These results suggested a recent spread of Cylindrospermopsis across the American and European continents from restricted warm refuge areas instead of exchanges between continents. On the other hand, they also suggested a recent colonization of Australia by African strains.

First report of cyanobacterium Cylindrospermopsis raciborskii from Algerian freshwaters.

This study investigated the first report of the cyanobacterium Cylindrospermopsis raciborskii in Algerian freshwaters. The morphological characteristics of the two morphotypes observed in Lake Oubeira (Algeria) conformed to those of natural populations of C. raciborskii species described in the literature. The two morphotypes produced only straight trichomes. During the study (February 2000-September 2001), this species occurred as a codominant with Microcystis spp., and a peak was observed during the autumn (November 2000) with a remarkable density estimated to be 43 x 10(5) trichomes/L. However, difficulty in isolating and culturing these two morphotypes limited the evaluation of their toxic potential.

Morphology, genetic diversity, temperature tolerance and toxicity of Cylindrospermopsis raciborskii (Nostocales, Cyanobacteria) strains from Thailand and Japan.

Cylindrospermopsis raciborskii is a planktonic, nostocalean cyanobacterium, which produces an alkaloid heptatoxin, cylindrospermopsin. We performed morphological observations, 16S rDNA sequence analysis, PCR fingerprint analysis of short tandemly repeated repetitive (STRR) sequences, temperature tolerances and toxin analysis to characterize 24 strains of this toxic cyanobacterium isolated from Thailand and Japan. All strains shared common morphological traits characteristic of C. raciborskii and showed high 16S rDNA sequence similarity, forming a defined cluster together with the reference strains from Australia. In particular, some of the Thai strains shared 99.9% to 100% similarity with the Australian strains. Various combinations of STRR primers revealed different and unique DNA band patterns among strains of C. raciborskii. The phylogenetic tree revealed two main clusters of C. raciborskii strains, the Thai/Japan-Shinobazugaike cluster (cluster I) and the Japan-Gonoike cluster (cluster II). Cluster I was further divided into two subclusters, A (only Thai strains) and B (one Thai strain and the Japan-Shinobazugaike strains). Thus, the results from 16S rDNA and STRR analyses showed no clear geographical distinction between Japanese and Thai strains and between Thai and Australian strains. Thai strains were separated into adaptive and non-adaptive groups to low temperature (15 and 17.5 degrees C) and Japanese strains were composed of only low-temperature-adaptive ones. The toxin cylindrospermopsin was detected in some strains of cluster I-A and in one strain of cluster II. We conclude that C. raciborskii is a species that has recently begun to invade, and a species with different physiological strains or ecotypes in temperature tolerance; the toxin is synthesized without any relation to phylogenetic or genetic clusters and to geography.