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1.
Cell Chem Biol ; 31(5): 932-943.e8, 2024 May 16.
Artigo em Inglês | MEDLINE | ID: mdl-38759619

RESUMO

Nucleotides perform important metabolic functions, carrying energy and feeding nucleic acid synthesis. Here, we use isotope tracing-mass spectrometry to quantitate contributions to purine nucleotides from salvage versus de novo synthesis. We further explore the impact of augmenting a key precursor for purine synthesis, one-carbon (1C) units. We show that tumors and tumor-infiltrating T cells (relative to splenic or lymph node T cells) synthesize purines de novo. Shortage of 1C units for T cell purine synthesis is accordingly a potential bottleneck for anti-tumor immunity. Supplementing 1C units by infusing formate drives formate assimilation into purines in tumor-infiltrating T cells. Orally administered methanol functions as a formate pro-drug, with deuteration enabling kinetic control of formate production. Safe doses of methanol raise formate levels and augment anti-PD-1 checkpoint blockade in MC38 tumors, tripling durable regressions. Thus, 1C deficiency can gate antitumor immunity and this metabolic checkpoint can be overcome with pharmacological 1C supplementation.


Assuntos
Carbono , Camundongos Endogâmicos C57BL , Purinas , Animais , Camundongos , Purinas/química , Purinas/farmacologia , Carbono/química , Carbono/metabolismo , Inibidores de Checkpoint Imunológico/farmacologia , Linfócitos do Interstício Tumoral/imunologia , Linfócitos do Interstício Tumoral/metabolismo , Linfócitos do Interstício Tumoral/efeitos dos fármacos , Linfócitos T/metabolismo , Linfócitos T/imunologia , Linfócitos T/efeitos dos fármacos , Formiatos/química , Formiatos/metabolismo , Formiatos/farmacologia , Metanol/química , Metanol/farmacologia , Feminino , Humanos , Linhagem Celular Tumoral
2.
J Nanobiotechnology ; 21(1): 474, 2023 Dec 10.
Artigo em Inglês | MEDLINE | ID: mdl-38072979

RESUMO

Copper-based antibacterial materials have emerged as a potential alternative for combating bacterial infections, which continue to pose significant health risks. Nevertheless, the use of copper-based nanoparticles as antibacterial agents has faced challenges due to their toxicity towards cells and tissues. To overcome this obstacle, we propose a new approach using a contact-active copper-based nanoparticles called polydopamine (PDA)-coated copper-amine (Cuf-TMB@PDA). The positively charged surface of Cuf-TMB@PDA enables efficient targeting of negatively charged bacteria, allowing controlled release of Cu(II) into the bacterial cell membrane. Moreover, Cuf-TMB@PDA exhibits similar ·OH signals as Cuf-TMB suspensions in previous work. In cytotoxicity assays conducted over 72 h, Cuf-TMB@PDA demonstrated an efficacy of 98.56%, while releasing lower levels of Cu(II) that were less harmful to cells, resulting in enhanced antimicrobial effects. These antimicrobial properties are attributed to the synergistic effects of charge-contact activity of PDA, controlled release of Cu(II), and free radicals. Subsequent in vivo experiments confirmed the strong antimicrobial potency of Cuf-TMB@PDA and its ability to promote wound healing.


Assuntos
Cobre , Nanopartículas , Cobre/farmacologia , Preparações de Ação Retardada/farmacologia , Antibacterianos/farmacologia , Cicatrização , Formiatos/farmacologia
3.
J Environ Manage ; 347: 119235, 2023 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-37806267

RESUMO

Silage as the main forage for ruminants could be a reservoir for antibiotic resistance genes (ARGs) through which these genes got access into the animals' system causing a latent health risk. This study employed metagenomics and investigated the ARGs' fate and transmission mechanism in high-moisture alfalfa silage treated with formic acid bactericide. The results showed that there were 22 ARGs types, in which multidrug, macrolide-lincosamide-streptogramine, bacitracin, beta-lactam, fosmidomycin, kasugamycin, and polymycin resistance genes were the most prevalent ARGs types in the ensiled alfalfa. The natural ensiling process increased ARGs enrichment. Intriguingly, after 5 days of ensiling, formic acid-treated silage reduced ARGs abundances by inhibiting host bacterial and plasmids. Although formic acid bactericide enhanced the fermentation characteristics of the high-moisture alfalfa by lowering silage pH, butyric acid concentration, dry matter losses and proteolysis, it increased ARGs abundances in alfalfa silage owing to increases in abundances of ARGs carriers and transposase after 90 days of ensiling. Notably, several pathogens like Staphylococcus, Clostridium, and Pseudomonas were inferred as potential ARGs hosts in high-moisture alfalfa silage, and high-moisture alfalfa silage may harbor a portion of the clinical ARGs. Fundamentally, microbes were distinguished as the foremost driving factor of ARGs propagation in ensiling microecosystem. In conclusion, although formic acid bactericide improved the fermentation characteristics of high-moisture alfalfa during ensiling and reduced ARGs enrichment at the initial ensiling stage, it increased ARGs enrichment at the end of ensiling.


Assuntos
Antibacterianos , Silagem , Animais , Silagem/análise , Silagem/microbiologia , Antibacterianos/farmacologia , Medicago sativa , Formiatos/farmacologia , Fermentação
4.
Microbiol Spectr ; 11(3): e0063122, 2023 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-37042762

RESUMO

Shigellosis caused by Shigella is one of the most important foodborne illnesses in global health, but little is known about the metabolic cross talk between this bacterial pathogen and its host cells during the different stages of the infection process. A detailed understanding of the metabolism can potentially lead to new drug targets remedying the pressing problem of antibiotic resistance. Here, we use stable isotope-resolved metabolomics as an unbiased and fast method to investigate how Shigella metabolizes 13C-glucose in three different environments: inside the host cells, adhering to the host cells, and alone in suspension. We find that especially formate metabolism by bacteria is sensitive to these different environments. The role of formate in pathogen metabolism is sparsely described in the literature compared to the roles of acetate and butyrate. However, its metabolic pathway is regarded as a potential drug target due to its production in microorganisms and its absence in humans. Our study provides new knowledge about the regulatory effect of formate. Bacterial metabolism of formate is pH dependent when studied alone in culture medium, whereas this effect is less pronounced when the bacteria adhere to the host cells. Once the bacteria are inside the host cells, we find that formate accumulation is reduced. Formate also affects the host cells resulting in a reduced infection rate. This was correlated to an increased immune response. Thus, intriguingly formate plays a double role in pathogenesis by increasing the virulence of Shigella and at the same time stimulating the immune response of the host. IMPORTANCE Bacterial infection is a pressing societal concern due to development of resistance toward known antibiotics. Central carbon metabolism has been suggested as a potential new target for drug development, but metabolic changes upon infection remain incompletely understood. Here, we used a cellular infection model to study how the bacterial pathogen Shigella adapts its metabolism depending on the environment starting from the extracellular medium until Shigella successfully invaded and proliferated inside host cells. The mixed-acid fermentation of Shigella was the major metabolic pathway during the infectious process, and the glucose-derived metabolite formate surprisingly played a divergent role in the pathogen and in the host cell. Our data show reduced infection rate when both host cells and bacteria were treated with formate, which correlated with an upregulated immune response in the host cells. The formate metabolism in Shigella thus potentially provides a route toward alternative treatment strategies for Shigella prevention.


Assuntos
Shigella flexneri , Shigella , Humanos , Células HeLa , Formiatos/metabolismo , Formiatos/farmacologia , Glucose/metabolismo
5.
Fish Physiol Biochem ; 49(1): 19-37, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-36759400

RESUMO

Organic acids and their derivatives have been attributed to growth and well-being improvement in fish when supplemented in their diets. Therefore, this study was conducted to evaluate the ameliorative role of potassium formate (PF) in rohu Labeo rohita fingerlings. A total of 240 healthy rohu fingerlings (9.0 ± 0.5 g ± SE) were randomly divided into four equal groups in triplicates. Fish were fed with isonitrogenous feeds: PF10 (10 g PF/kg), PF20 (20 g PF/kg) and PF30 (30 g PF/kg). Feed without PF supplementation served as control. The results indicated that the specific growth rate (SGR) and feed conversion ratio (FCR) were significantly (p<0.05) higher in PF10. Total serum globulin content was found significantly (p<0.05) elevated in PF10 after the bacterial challenge. Non-specific lysozyme activity was significantly higher (p<0.05) after the challenge. The digestive protease enzyme activity was significantly (p<0.05) improved in PF10 treatment. Additionally, the digestive morphology of the treated fish was seen to be improved. Greater villus area, increased villus number, reduced lumen space in the hindgut, reduced vacuolation in mucosal folds and proliferation of goblet cells-like changes were observed in the PF-supplemented fish. Significantly (p<0.05), a higher relative percentage of survival (RPS) was observed in PF10 and PF20 treatments. The study revealed that the dietary supplementation of rohu fingerlings with lower levels of potassium formate could enhance the nutritional efficiency and physiological activities of rohu fingerlings. This study serves as a baseline for future research on the application of formic acid derivatives and other acidifiers in carp culture.


Assuntos
Cyprinidae , Potássio na Dieta , Animais , Dieta/veterinária , Suplementos Nutricionais , Formiatos/farmacologia , Proteínas , Ração Animal/análise
6.
Curr Pharm Des ; 28(34): 2835-2841, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35996233

RESUMO

AIMS: To develop new anticancer agents based on ferrocene core. BACKGROUND: Cancer has become the major cause of human death globally. The death caused by cancer mainly focuses on lung cancer, breast cancer, liver cancer, carcinoma of the colon, and rectum. Some small molecular inhibitors have been authorized by FDA for the treatment of cancer and several candidates are in different phases of clinical trials. However, cancer chemotherapy is still highly inadequate. Thus, it is indispensable to develop novel anticancer agents. OBJECTIVE: Based on the previous good results, twelve novel structures of ferrocene formates bearing isoxazole moiety (3a-3l) were synthesized in this work for the development of anticancer agents. METHODS: The target compounds were synthesized using Ferrocenecarboxylic acid and 3-[(R)-substitutedphenyl]- isoxazole-5-methanol catalyzed by DCC and DMAP. The structures of target compounds were characterized by 1H NMR, 13C NMR, MS, HR-MS and XRD. Then, their preliminarily in vitro cytotoxicity against A549, HCT116, and MCF-7 cell lines was evaluated using the MTT method. RESULTS: The results showed that most compounds exhibited moderate cytotoxicity against A549, HCT116, and MCF-7 cell lines compared with the positive control gefitinib. However, (3b, 3c, 3e, 3j, and 3k) simultaneously exhibited stronger inhibitory activity against A549, HCT116, and MCF-7 cell lines, which can be regarded as promising metal-based lead compounds for the development of anticancer agents. CONCLUSION: In this work, twelve new structures of ferrocene derivatives containing isozaole moiety were synthesized and their cytotoxicity against 549, HCT116, and MCF-7 cell lines was evaluated. (3b, 3c, 3e, 3j, and 3k) simultaneously exhibited stronger inhibitory activity towards A549, HCT116, and MCF-7 cell lines, which can be regarded as promising metal-based lead compounds for the development of anticancer agents.


Assuntos
Antineoplásicos , Isoxazóis , Humanos , Células MCF-7 , Metalocenos/farmacologia , Isoxazóis/farmacologia , Isoxazóis/química , Cristalografia por Raios X , Formiatos/farmacologia , Relação Estrutura-Atividade , Antineoplásicos/farmacologia , Antineoplásicos/química , Ensaios de Seleção de Medicamentos Antitumorais , Proliferação de Células , Estrutura Molecular , Linhagem Celular Tumoral
7.
J Econ Entomol ; 115(5): 1417-1422, 2022 10 12.
Artigo em Inglês | MEDLINE | ID: mdl-35980393

RESUMO

Resistance to traditional synthetic compounds by Varroa destructor Anderson and Trueman and shortcomings of the organic acid class of acaracides commonly used in varroa management requires continual development of new controls. V. destructor, however, are difficult to obtain for use in control bioassays because they are obligate parasites that cannot be easily reared outside of a honey bee colony. We conducted bioassays using other, more easily obtainable species to find organisms that could be used as surrogates for V. destructor when testing new potential controls. We compared the toxicities of acetic acid, lactic acid, formic acid, and oxalic acid at 0.005%, 0.05%, 0.5%, 5%, and 50% (20% oxalic acid only) concentrations based on natural volatility (nonheated) for the control of two beetle species, Oryzaephilus surinamensis L. and Alphitobius diaperinus Panzer, greater wax moth larvae, Galleria mellonella L., and V. destructor. The assay results were consistent across all species with formic acid and acetic acid showing 100% mortality of all four test species at 50% concentration. The assays also provided insight into the method of application (vaporization or contact) needed to cause mortality. Our results show that other organisms can be used in place of V. destructor for initial testing of acids and possibly other chemicals for control of the ectoparasite.


Assuntos
Aracnídeos , Varroidae , Animais , Abelhas , Bioensaio , Formiatos/farmacologia , Insetos , Ácido Láctico , Ácido Oxálico
8.
Int J Biochem Cell Biol ; 148: 106236, 2022 07.
Artigo em Inglês | MEDLINE | ID: mdl-35688405

RESUMO

Various inhibitors are produced during the hydrolysis of lignocellulosic biomass that can interfere with the growth of yeast cells and the production of bioethanol. Formic acid is a common weak acid inhibitor present in lignocellulosic hydrolysate that has toxic effects on yeast cells. However, the mechanism of the response of Saccharomyces cerevisiae to formic acid is not fully understood. In this study, liquid chromatography-mass spectrometry (LC-MS) was used to investigate the effects of formic acid treatment on cell metabolites of S. cerevisiae. Treatment with different concentrations of formic acid significantly inhibited the growth of yeast cells, reduced the yield of ethanol, prolonged the cell fermentation cycle, and increased the content of malondialdehyde. Principal component analysis and orthogonal partial least squares discriminant analysis showed that 55 metabolites were significantly altered in S. cerevisiae after formic acid treatment. The metabolic relevance of these compounds in the response of S. cerevisiae to formic acid stress was investigated. Formic acid can cause oxidative stress, inhibit protein synthesis, and damage DNA in S. cerevisiae, and these are possible reasons for the inhibition of S. cerevisiae cell growth. In addition, the levels of several aromatic amino acids identified in the cells of formic acid-treated yeast were increased; the biosynthesis of nucleotides was slowed, and energy consumption was reduced. These mechanisms may help to improve the tolerance of yeast cells to formic acid. The results described herein highlight our current understanding of the molecular mechanism of the response of S. cerevisiae to formic acid. The study will provide a theoretical basis for research on the tolerance mechanisms of S. cerevisiae.


Assuntos
Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae , Fermentação , Formiatos/metabolismo , Formiatos/farmacologia , Metaboloma , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo
9.
Environ Microbiol Rep ; 14(4): 664-678, 2022 08.
Artigo em Inglês | MEDLINE | ID: mdl-35615789

RESUMO

Anaerobic digestion (AD) is an important technology for the effective conversion of waste and wastewater to methane. Here, syntrophic bacteria transfer molecular hydrogen (H2 ), formate, or directly supply electrons (direct interspecies electron transfer, DIET) to the methanogens. Evidence is accumulating that the methanation of short-chain fatty acids can be enhanced by the addition of conductive material to the anaerobic digester, which has often been attributed to the stimulation of DIET. Since little is known about the transcriptional response of a complex AD microbial community to the addition of conductive material, we added magnetite to propionate-fed laboratory-scale reactors that were inoculated with wastewater sludge. Compared to the control reactors, the magnetite-amended reactors showed improved methanation of propionate. A genome-centric metatranscriptomics approach identified the active SCFA-oxidizing bacteria that affiliated with Firmicutes, Desulfobacterota and Cloacimonadota. The transcriptional profiles revealed that the syntrophic bacteria transferred acetate, H2 and formate to acetoclastic and hydrogenotrophic methanogens, whereas transcription of potential determinants for DIET such as conductive pili and outer-membrane cytochromes did not significantly change with magnetite addition. Overall, changes in the transcriptional profiles of syntrophic Bacteria and Archaea in propionate-fed lab-scale reactors amended with magnetite refute a major role of DIET in the studied system.


Assuntos
Archaea , Euryarchaeota , Anaerobiose , Archaea/genética , Bactérias/genética , Euryarchaeota/genética , Óxido Ferroso-Férrico/farmacologia , Formiatos/farmacologia , Metano , Propionatos , Esgotos , Águas Residuárias
10.
Int J Mol Sci ; 23(6)2022 Mar 21.
Artigo em Inglês | MEDLINE | ID: mdl-35328826

RESUMO

Bioethanol from lignocellulosic biomass is a promising and sustainable strategy to meet the energy demand and to be carbon neutral. Nevertheless, the damage of lignocellulose-derived inhibitors to microorganisms is still the main bottleneck. Developing robust strains is critical for lignocellulosic ethanol production. An evolved strain with a stronger tolerance to formate and acetate was obtained after adaptive laboratory evolution (ALE) in the formate. Transcriptional analysis was conducted to reveal the possible resistance mechanisms to weak acids, and fdh coding for formate dehydrogenase was selected as the target to verify whether it was related to resistance enhancement in Saccharomyces cerevisiae F3. Engineered S. cerevisiae FA with fdh overexpression exhibited boosted tolerance to both formate and acetate, but the resistance mechanism to formate and acetate was different. When formate exists, it breaks down by formate dehydrogenase into carbon dioxide (CO2) to relieve its inhibition. When there was acetate without formate, FDH1 converted CO2 from glucose fermentation to formate and ATP and enhanced cell viability. Together, fdh overexpression alone can improve the tolerance to both formate and acetate with a higher cell viability and ATP, which provides a novel strategy for robustness strain construction to produce lignocellulosic ethanol.


Assuntos
Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae , Ácido Acético/farmacologia , Trifosfato de Adenosina , Dióxido de Carbono , Etanol , Fermentação , Formiato Desidrogenases/genética , Formiatos/farmacologia , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética
11.
World J Microbiol Biotechnol ; 38(2): 34, 2022 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-34989900

RESUMO

Formic acid is a representative small molecule acid in lignocellulosic hydrolysate that can inhibit the growth of Saccharomyces cerevisiae cells during alcohol fermentation. However, the mechanism of formic acid cytotoxicity remains largely unknown. In this study, RNA-Seq technology was used to study the response of S. cerevisiae to formic acid stress at the transcriptional level. Scanning electron microscopy and Fourier transform infrared spectroscopy were conducted to observe the surface morphology of yeast cells. A total of 1504 genes were identified as being differentially expressed, with 797 upregulated and 707 downregulated genes. Transcriptomic analysis showed that most genes related to glycolysis, glycogen synthesis, protein degradation, the cell cycle, the MAPK signaling pathway, and redox regulation were significantly induced under formic acid stress and were involved in protein translation and synthesis amino acid synthesis genes were significantly suppressed. Formic acid stress can induce oxidative stress, inhibit protein biosynthesis, cause cells to undergo autophagy, and activate the intracellular metabolic pathways of energy production. The increase of glycogen and the decrease of energy consumption metabolism may be important in the adaptation of S. cerevisiae to formic acid. In addition, formic acid can also induce sexual reproduction and spore formation. This study through transcriptome analysis has preliminarily reveal the molecular response mechanism of S. cerevisiae to formic acid stress and has provided a basis for further research on methods used to improve the tolerance to cell inhibitors in lignocellulose hydrolysate.


Assuntos
Formiatos/farmacologia , Saccharomyces cerevisiae/efeitos dos fármacos , Saccharomyces cerevisiae/metabolismo , Estresse Fisiológico/efeitos dos fármacos , Transcriptoma , Ciclo Celular , Tolerância a Medicamentos , Metabolismo Energético , Fermentação , Perfilação da Expressão Gênica/métodos , Regulação Fúngica da Expressão Gênica , Glicólise , Lignina , Estresse Oxidativo/efeitos dos fármacos , Biossíntese de Proteínas , RNA-Seq , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/crescimento & desenvolvimento , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Estresse Fisiológico/genética
12.
PLoS One ; 16(10): e0258845, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34699527

RESUMO

The ectoparasite Varroa destructor Anderson and Trueman is the most important parasites of the western honey bee, Apis mellifera L. The most widely currently used treatment uses formic acid (FA), but the understanding of its effects on V. destructor is limited. In order to understand the mechanism of action of FA, its effect on Varroa mites was investigated using proteomic analysis by liquid chromatography-mass spectrometry/mass spectrometry (LC-MS/MS). V. destructor was collected from honey bee colonies with natural mite infestation before and 24 h after the initiation of FA treatment and subjected to proteome analysis. A total of 2637 proteins were identified. Quantitative analysis of differentially expressed candidate proteins (fold change ≥ 1.5; p ≤ 0.05) revealed 205 differentially expressed proteins: 91 were induced and 114 repressed in the FA-treated group compared to the untreated control group. Impaired protein synthesis accompanied by increased protein and amino acid degradation suggest an imbalance in proteostasis. Signs of oxidative stress included significant dysregulation of candidate proteins of mitochondrial cellular respiration, increased endocytosis, and induction of heat shock proteins. Furthermore, an increased concentration of several candidate proteins associated with detoxification was observed. These results suggest dysregulated cellular respiration triggered by FA treatment as well as an increase in cellular defense mechanisms, including induced heat shock proteins and detoxification enzymes.


Assuntos
Proteínas de Artrópodes/metabolismo , Formiatos/farmacologia , Proteômica/métodos , Varroidae/metabolismo , Animais , Abelhas/parasitologia , Respiração Celular/efeitos dos fármacos , Cromatografia Líquida , Regulação da Expressão Gênica/efeitos dos fármacos , Estresse Oxidativo , Espectrometria de Massas em Tandem , Varroidae/efeitos dos fármacos
13.
J Neuropathol Exp Neurol ; 80(10): 912-921, 2021 10 26.
Artigo em Inglês | MEDLINE | ID: mdl-34498073

RESUMO

The protein tau, when misfolded in neurodegenerative diseases, has several prion-like properties including being able to spread by cell-to-cell transfer, induce templated seeding, and exist in distinct conformational strains. These properties of transmission may present health hazards when lesion-containing biospecimens are used in research and neuropathology laboratories. We evaluated the impact standard sterilization and cleaning methods have on the capacity of tau seeds to induce aggregation. We employed a previously developed, highly sensitive FRET-based biosensor assay to assess remnant tau seeding after exposure to these procedures. For tau species derived from human Alzheimer disease tissue (brain homogenate and sarkosyl-insoluble fibrils), both autoclaving and incubation in 90.6% formic acid were sufficient to reduce tau bioactivity. By contrast, boiling was not always effective in completely blocking bioactivity in the seeding assay. Notably, only formic acid incubation was able to produce a similar reduction in tissue from a P301L mutant tau mouse model of tauopathy. Our study highlights nuances in methods for inactivation of tau seeding which may support adapted tissue processing procedures, especially in research settings. These findings also highlight the importance of universal precautions when handling human neuropathological and research laboratory materials.


Assuntos
Doença de Alzheimer/patologia , Encéfalo/patologia , Esterilização/métodos , Proteínas tau/isolamento & purificação , Animais , Encéfalo/efeitos dos fármacos , Cromatografia em Gel/métodos , Formiatos/farmacologia , Células HEK293 , Humanos , Camundongos , Camundongos Transgênicos , Tauopatias/patologia , Proteínas tau/antagonistas & inibidores
14.
BMC Microbiol ; 21(1): 77, 2021 03 08.
Artigo em Inglês | MEDLINE | ID: mdl-33685391

RESUMO

BACKGROUND: Lignocellulosic material is a suitable renewable carbon and energy source for microbial cell factories, such as Yarrowia lipolytica. To be accessible for microorganisms, the constituent sugars need to be released in a hydrolysis step, which as a side effect leads to the formation of various inhibitory compounds. However, the effects of these inhibitory compounds on the growth of Y. lipolytica have not been thoroughly investigated. RESULTS: Here we show the individual and combined effect of six inhibitors from three major inhibitor groups on the growth of Y. lipolytica. We engineered a xylose consuming strain by overexpressing the three native genes XR, XDH, and XK and found that the inhibitor tolerance of Y. lipolytica is similar in glucose and in xylose. Aromatic compounds could be tolerated at high concentrations, while furfural linearly increased the lag phase of the cultivation, and hydroxymethylfurfural only inhibited growth partially. The furfural induced increase in lag phase can be overcome by an increased volume of inoculum. Formic acid only affected growth at concentrations above 25 mM. In a synthetic hydrolysate, formic acid, furfural, and coniferyl aldehyde were identified as the major growth inhibitors. CONCLUSION: We showed the individual and combined effect of inhibitors found in hydrolysate on the growth of Y. lipolytica. Our study improves understanding of the growth limiting inhibitors found in hydrolysate and enables a more targeted engineering approach to increase the inhibitor tolerance of Y. lipolytica. This will help to improve the usage of Y. lipolytica as a sustainable microbial cell factory.


Assuntos
Inibidores do Crescimento/farmacologia , Microbiologia Industrial , Yarrowia/efeitos dos fármacos , Acroleína/análogos & derivados , Acroleína/farmacologia , Formiatos/farmacologia , Furaldeído/farmacologia , Hidrólise , Lignina/química , Lignina/metabolismo , Yarrowia/metabolismo
15.
IUBMB Life ; 73(6): 883-892, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-33773019

RESUMO

Escherichia coli is able to utilize the mixture of carbon sources and produce molecular hydrogen (H2 ) via formate hydrogen lyase (FHL) complexes. In current work role of transcriptional activator of formate regulon FhlA in generation of fermentation end products and proton motive force, N'N'-dicyclohexylcarbodiimide (DCCD)-sensitive ATPase activity at 20 and 72 hr growth during utilization of mixture of glucose, glycerol, and formate were investigated. It was shown that in fhlA mutant specific growth rate was ~1.5 fold lower compared to wt, while addition of DCCD abolished the growth in fhlA but not in wt. Formate was not utilized in fhlA mutant but wt cells simultaneously utilized formate with glucose. Glycerol utilization started earlier (from 2 hr) in fhlA than in wt. The DCCD-sensitive ATPase activity in wt cells membrane vesicles increased ~2 fold at 72 hr and was decreased 70% in fhlA. Addition of formate in the assays increased proton ATPase activity in wt and mutant strain. FhlA absence mainly affected the ΔpH but not ΔΨ component of Δp in the cells grown at 72 hr but not in 24 hr. The Δp in wt cells decreased from 24 to 72 hr of growth ~40 mV while in fhlA mutant it was stable. Taken together, it is suggested that FhlA regulates the concentration of fermentation end products and via influencing FO F1 -ATPase activity contributes to the proton motive force generation.


Assuntos
Proteínas de Escherichia coli/genética , Escherichia coli/genética , Força Próton-Motriz/genética , ATPases Translocadoras de Prótons/genética , Transativadores/fisiologia , Acetatos/metabolismo , Carbono/metabolismo , Dicicloexilcarbodi-Imida/farmacologia , Escherichia coli/efeitos dos fármacos , Escherichia coli/metabolismo , Proteínas de Escherichia coli/metabolismo , Proteínas de Escherichia coli/fisiologia , Fermentação , Formiatos/metabolismo , Formiatos/farmacologia , Glucose/metabolismo , Glicerol/metabolismo , Hidrogênio/metabolismo , Concentração de Íons de Hidrogênio , Oxirredução , Transativadores/genética
16.
Cell Rep ; 34(11): 108869, 2021 03 16.
Artigo em Inglês | MEDLINE | ID: mdl-33730581

RESUMO

Mitochondrial carriers (MCs) mediate the passage of small molecules across the inner mitochondrial membrane (IMM), enabling regulated crosstalk between compartmentalized reactions. Despite MCs representing the largest family of solute carriers in mammals, most have not been subjected to a comprehensive investigation, limiting our understanding of their metabolic contributions. Here, we functionally characterize SFXN1, a member of the non-canonical, sideroflexin family. We find that SFXN1, an integral IMM protein with an uneven number of transmembrane domains, is a TIM22 complex substrate. SFXN1 deficiency leads to mitochondrial respiratory chain impairments, most detrimental to complex III (CIII) biogenesis, activity, and assembly, compromising coenzyme Q levels. The CIII dysfunction is independent of one-carbon metabolism, the known primary role for SFXN1 as a mitochondrial serine transporter. Instead, SFXN1 supports CIII function by participating in heme and α-ketoglutarate metabolism. Our findings highlight the multiple ways that SFXN1-based amino acid transport impacts mitochondrial and cellular metabolic efficiency.


Assuntos
Complexo III da Cadeia de Transporte de Elétrons/metabolismo , Mitocôndrias/metabolismo , Transportador 1 de Glucose-Sódio/metabolismo , Formiatos/farmacologia , Deleção de Genes , Células HEK293 , Células HeLa , Heme/biossíntese , Hemina/farmacologia , Homeostase/efeitos dos fármacos , Humanos , Ferro/metabolismo , Ácidos Cetoglutáricos/farmacologia , Membranas Mitocondriais/efeitos dos fármacos , Membranas Mitocondriais/metabolismo , Proteínas do Complexo de Importação de Proteína Precursora Mitocondrial/metabolismo , Especificidade por Substrato/efeitos dos fármacos
17.
Biotechnol Bioeng ; 118(3): 1366-1380, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33331660

RESUMO

Autotrophic or mixotrophic use of one-carbon (C1) compounds is gaining importance for sustainable bioproduction. In an effort to integrate the reductive glycine pathway (rGP) as a highly promising pathway for the assimilation of CO2 and formate, genes coding for glycine synthase system from Gottschalkia acidurici were successfully introduced into Clostridium pasteurianum, a non-model host microorganism with industrial interests. The mutant harboring glycine synthase exhibited assimilation of exogenous formate and reduced CO2 formation. Further metabolic data clearly showed large impacts of expression of glycine synthase on the product metabolism of C. pasteurianum. In particular, 2-oxobutyrate (2-OB) was observed for the first time as a metabolic intermediate of C. pasteurianum and its secretion was solely triggered by the expression of glycine synthase. The perturbation of C1 metabolism is discussed regarding its interactions with pathways of the central metabolism, acidogenesis, solventogenesis, and amino acid metabolism. The secretion of 2-OB is considered as a consequence of metabolic and redox instabilities due to the activity of glycine synthase and may represent a common metabolic response of Clostridia in enhanced use of C1 compounds.


Assuntos
Aminometiltransferase/biossíntese , Proteínas de Bactérias/biossíntese , Clostridium/enzimologia , Formiatos/farmacologia , Indução Enzimática/efeitos dos fármacos
18.
Sci Rep ; 10(1): 21943, 2020 12 14.
Artigo em Inglês | MEDLINE | ID: mdl-33318550

RESUMO

Formic acid (FA) has been used for decades to control Varroa destructor, one of the most important parasites of the western honey bee, Apis mellifera. The rather unselective molecular mode of action of FA and its possible effects on honeybees have long been a concern of beekeepers, as it has undesirable side effects that affect the health of bee colonies. This study focuses on short-term transcriptomic changes as analysed by RNAseq in both larval and adult honey bees and in mites after FA treatment under applied conditions. Our study aims to identify those genes in honey bees and varroa mites differentially expressed upon a typical FA hive exposure scenario. Five detoxification-related genes were identified with significantly enhanced and one gene with significantly decreased expression under FA exposure. Regulated genes in our test setting included members of various cytochrome P450 subfamilies, a flavin-dependent monooxygenase and a cytosolic 10-formyltetrahydrofolate dehydrogenase (FDH), known to be involved in formate metabolism in mammals. We were able to detect differences in the regulation of detoxification-associated genes between mites and honey bees as well as between the two different developmental stages of the honey bee. Additionally, we detected repressed regulation of Varroa genes involved in cellular respiration, suggesting mitochondrial dysfunction and supporting the current view on the mode of action of FA-inhibition of oxidative phosphorylation. This study shows distinct cellular effects induced by FA on the global transcriptome of both host and parasite in comparison. Our expression data might help to identify possible differences in the affected metabolic pathways and thus make a first contribution to elucidate the mode of detoxification of FA.


Assuntos
Abelhas , Formiatos/farmacologia , Perfilação da Expressão Gênica , Regulação da Expressão Gênica/efeitos dos fármacos , Varroidae/metabolismo , Animais , Abelhas/metabolismo , Abelhas/parasitologia
19.
Food Microbiol ; 92: 103569, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32950154

RESUMO

This study investigated the antimicrobial activities of organic acid vapors against a phytopathogen (Acidovorax citrulli) and foodborne pathogens (Salmonella enterica, Escherichia coli O157:H7, and Listeria monocytogenes) on the surface of Cucurbitaceae seeds. Germination percentages of cucumber, honeydew melon and watermelon seeds treated with acetic and propionic acid vapors (100 mg/L) at 50 °C and 43% or 85% relative humidity (RH) for up to 2 h did not significantly (P > 0.05) decrease. Treatment with formic acid significantly (P ≤ 0.05) decreased the germination percentage. The antimicrobial activities of acetic and propionic acid vapors (100 mg/L; 50 °C; 43% or 85% RH) were determined. A. citrulli was inactivated within 1 h on cucumber and watermelon seeds, regardless of type of organic acid or RH. The phytopathogen was reduced to levels below the detection limit (-0.5 log CFU/g) for enrichment on honeydew melon seeds treated with acetic acid vapor. S. enterica and L. monocytogenes were inactivated within 2 h at 85% RH on honeydew melon and watermelon seeds treated with acetic acid and propionic acid vapors. E. coli O157: H7 was inactivated by treatment with acetic acid vapor at 85% RH. This study provides useful information for developing a method to decontaminate Curcurbitaceae seeds using organic acid vapors as lethal agents.


Assuntos
Ácidos/farmacologia , Antibacterianos/farmacologia , Cucurbitaceae/microbiologia , Escherichia coli O157/efeitos dos fármacos , Listeria monocytogenes/efeitos dos fármacos , Salmonella enterica/efeitos dos fármacos , Ácido Acético/química , Ácido Acético/farmacologia , Ácidos/química , Antibacterianos/química , Comamonadaceae/efeitos dos fármacos , Comamonadaceae/crescimento & desenvolvimento , Cucurbitaceae/crescimento & desenvolvimento , Escherichia coli O157/crescimento & desenvolvimento , Formiatos/química , Formiatos/farmacologia , Germinação , Listeria monocytogenes/crescimento & desenvolvimento , Propionatos/química , Propionatos/farmacologia , Salmonella enterica/crescimento & desenvolvimento , Sementes/crescimento & desenvolvimento , Sementes/microbiologia
20.
Int J Biol Macromol ; 164: 4662-4670, 2020 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-32941904

RESUMO

Understanding the structure and properties of lignin has important practical significance for its further applications. In this case, eucalyptus was fractionated with 88% formic acid at 101 °C for different durations, and the removal efficiency as well as the chemical structure of lignin at various stages were comparatively analyzed. The obtained data indicated that with increasing reaction time, lignin was continuously removed and the process could be divided into three stages. The lignin dissolution rate was fast first and then slow, and the molecular weight of the dissolved lignin increased with time. The lignin structure was condensed and the molecular weight increased with prolonged of reaction time. Structural analysis indicated that the ß-O-4' structure was largely destroyed, the G-type lignin dissolved early, and the degradation of the S-type lignin became more intensive with increasing reaction time. This is of great help for reaction control as well as the further processing of lignin byproducts.


Assuntos
Eucalyptus/química , Formiatos/farmacologia , Lignina/isolamento & purificação , Carboidratos/isolamento & purificação , Celulose/análise , Fracionamento Químico , Cromatografia Líquida de Alta Pressão , Lignina/química , Estrutura Molecular , Peso Molecular , Ressonância Magnética Nuclear Biomolecular , Solubilidade , Temperatura , Madeira/química , Madeira/efeitos dos fármacos
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