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1.
Antonie Van Leeuwenhoek ; 113(2): 221-231, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31535337

RESUMO

An extremely halophilic archaeon, strain ZY21T, was isolated from a subterranean rock salt sample in Yunnan, China. Colonies of strain ZY21T on nutrient-rich agar plates are orange, wet and transparent. Cells are pleomorphic, motile, Gram-stain negative and lyse in distilled water. Cells can grow at 20-55 °C (optimum 42 °C), in the presence of 15-30% (w/v) NaCl (optimum 18-20%) and at pH 6.0-9.5 (optimum 7.5). Mg2+ is required for growth (optimum 0.3 M). The major polar lipids of strain ZY21T are phosphatidylglycerol, phosphatidylglycerol sulfate and phosphatidylglycerol phosphate methyl ester, sulfated mannosyl-glucosyl-glycerol diether-1 and seven unidentified glycolipids. Sequence similarity searches with the 16S rRNA gene and rpoB' gene showed that strain ZY21T is closely related to Halobellus rufus CBA1103T (sequence similarities: 97.5% for 16S rRNA gene and 93.3% for rpoB' gene). The DNA G+C content of strain ZY21T was determined to be 63.0 mol% based on the draft genome sequence. Genome-based sequence similarity analysis showed that the values of the ANI, AAI, and DDH were far below the boundary for delineation of new species. Phenotypic, chemotaxonomic characteristics and phylogenetic properties suggest that strain ZY21T represents a novel species in the genus Halobellus, for which the name Halobellus captivus sp. nov. is proposed. The type strain is ZY21T (= CGMCC 1.16343T = NBRC 113439T).


Assuntos
Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/metabolismo , Cloreto de Sódio/farmacologia , Composição de Bases/genética , DNA Arqueal/genética , DNA Ribossômico/genética , Halobacteriaceae/genética , RNA Ribossômico 16S/genética
2.
FEMS Microbiol Lett ; 366(18)2019 09 01.
Artigo em Inglês | MEDLINE | ID: mdl-31742601

RESUMO

Adaptive strategies responsible for heavy metal tolerance were explored in the extremely halophilic archaeon Halomicrobium mukohataei DSM 12286. The tested strain was seemingly able to overcome silver-induced oxidative stress (assessed by malondialdehyde quantification, catalase assay and total antioxidant capacity measurement) mainly through non-enzymatic antioxidants. Energy dispersive spectrometry analysis illustrated the presence of colloidal silver in Hmc. mukohataei cultures exposed to AgNO3. Bright-field and transmission electron microscopy images, as well as dynamic light scattering analysis, demonstrated the presence of intracellular nanoparticles, mostly spherical, within a size range of 20-100 nm. As determined by the zeta potential measurement, the biosynthesized nanoparticles were highly stable, with a negative surface charge. Our research is a first attempt in the systematic study of the oxidative stress and intracellular silver nanoparticle accumulation, generated by exposure to silver ions, in members of Halobacteria class, thus broadening our knowledge on mechanisms supporting heavy metal tolerance of microbial cells living under saline conditions.


Assuntos
Adaptação Fisiológica , Halobacteriaceae/efeitos dos fármacos , Halobacteriales/efeitos dos fármacos , Nitrato de Prata/toxicidade , Catalase/metabolismo , Halobacteriaceae/metabolismo , Halobacteriaceae/ultraestrutura , Halobacteriales/metabolismo , Halobacteriales/ultraestrutura , Malondialdeído/metabolismo , Testes de Sensibilidade Microbiana , Nanopartículas/química , Nanopartículas/ultraestrutura , Estresse Oxidativo , Tamanho da Partícula , Prata/química , Prata/metabolismo , Eletricidade Estática
3.
Ecotoxicol Environ Saf ; 184: 109634, 2019 Nov 30.
Artigo em Inglês | MEDLINE | ID: mdl-31520950

RESUMO

Imidazolium-based ionic liquids (IL) with short-alkyl side chain such as 1-ethyl-3-methyl-imidazolium chloride ([Emim]Cl) and 1-butyl-3-methyl-imidazolium chloride ([Bmim]Cl) has immense application potential including in lignocellulosic bioenergy production. But they are toxic to most microorganisms, and those isolated from different environments as IL-tolerant have salt tolerance capabilities. This study evaluates the relationship between salt and [Emim]Cl tolerance of microorganisms using different salinity sediments (2-19%) and brines (35%) of India's largest inland hypersaline lake, Sambhar in Rajasthan as the model system. While samples with 2% and 35% salinities do not yield any [Emim]Cl (100 mM) tolerant colonies, others have 6-50% colonies tolerant to the IL. Similar trend was observed with 50 mM [Bmim]Cl. Moderate halophilic isolates of genera Halomonas and Bacillus (growth in 0.7-3.0 M NaCl) isolated from the sediments could grow in as high as 375 mM [Emim]Cl, or 125 mM [Bmim]Cl facilitated by higher synthesis, and uptake of organic osmolytes; and up to 1.7-fold increased activity of active efflux pumps. [Bmim]Cl was more toxic than [Emim]Cl in all performed experiments. [Emim]Cl-adapted cells could trounce IL-induced stress. Interestingly, enrichment with 100 mM [Emim]Cl resulted in increase of IL-tolerant colonies in all sediments including the one with 2% salinity. However, the salt saturated brines (35%) do not yield any such colony even after repeated incubations. Extreme halophilic archaea, Natronomonas (growth in 3.0-4.0 M NaCl) isolated from such brines, were exceedingly sensitive to even 5 mM [Emim]Cl, or 1 mM [Bmim]Cl. Two additional extremophilic archaea, namely Haloferax and Haladaptatus were also sensitive to the tested ILs. Archaeal sensitivity is possibly due to the competitive interaction of [Emim]+ with their acidic proteome (15.4-17.5% aspartic and glutamic acids, against 10.7-12.9% in bacteria) that they maintain to stabilize the high amount of K+ ion accumulated by salt-in strategy. Thus, general salt adaptation strategies of moderate halophilic bacteria help them to restrain toxicity of these ILs, but extremophilic archaea are highly sensitive and demands meticulous use of these solvents to prevent environmental contamination.


Assuntos
Halobacteriaceae/efeitos dos fármacos , Halomonas/efeitos dos fármacos , Imidazóis/toxicidade , Líquidos Iônicos/toxicidade , Sedimentos Geológicos/química , Sedimentos Geológicos/microbiologia , Índia , Lagos/química , Lagos/microbiologia , Salinidade , Tolerância ao Sal
4.
J Mol Biol ; 431(15): 2790-2809, 2019 07 12.
Artigo em Inglês | MEDLINE | ID: mdl-31071327

RESUMO

Sensory rhodopsin II (pSRII), a retinal-binding photophobic receptor from Natronomonas pharaonis, is a novel model system for membrane protein folding studies. Recently, the SDS-denatured states and the kinetics for reversible unfolding of pSRII have been investigated, opening the door to the first detailed characterisation of denatured states of a membrane protein by solution-state nuclear magnetic resonance (NMR) using uniformly 15N-labelled pSRII. SDS denaturation and acid denaturation of pSRII both lead to fraying of helix ends but otherwise small structural changes in the transmembrane domain, consistent with little changes in secondary structure and disruption of the retinal-binding pocket and tertiary structure. Widespread changes in the backbone amide dynamics are detected in the form of line broadening, indicative of µs-to-ms timescale conformational exchange in the transmembrane region. Detailed analysis of chemical shift and intensity changes lead to high-resolution molecular insights on structural and dynamics changes in SDS- and acid-denatured pSRII, thus highlighting differences in the unfolding pathways under the two different denaturing conditions. These results will form the foundation for furthering our understanding on the folding and unfolding pathways of retinal-binding proteins and membrane proteins in general, and also for investigating the importance of ligand-binding in the folding pathways of other ligand-binding membrane proteins, such as GPCRs.


Assuntos
Halobacteriaceae/metabolismo , Rodopsinas Sensoriais/química , Dodecilsulfato de Sódio/farmacologia , Halobacteriaceae/química , Halobacteriaceae/efeitos dos fármacos , Modelos Moleculares , Ressonância Magnética Nuclear Biomolecular , Desnaturação Proteica , Dobramento de Proteína/efeitos dos fármacos , Estrutura Secundária de Proteína/efeitos dos fármacos , Estrutura Terciária de Proteína/efeitos dos fármacos , Rodopsinas Sensoriais/efeitos dos fármacos
5.
Cell Mol Biol (Noisy-le-grand) ; 64(4): 83-91, 2018 Mar 31.
Artigo em Inglês | MEDLINE | ID: mdl-29631688

RESUMO

In Algeria, many salt lakes are to be found spread from southern Tunisia up to the Atlas Mountains in northern Algeria. Oum Eraneb and Ain El beida sebkhas (salt lakes), are located in the Algerian Sahara. The aim of this study was to explore the diversity of the halobacteria in this type of habitats. The physicochemical properties of these shallow saline environments were examined and compared with other hypersaline and marine ecosystems. Both sites were relatively alkaline with a pH around 8.57- 8.74 and rich in salt at 13% and 16% (w/v) salinity for Oum Eraneb and Ain El beida, respectively, with dominant ions of sodium and chloride. The microbial approach revealed the presence of two halophilic archaea, strains JCM13561 and A33T in both explored sebkhas. Growth occurred between 10 and 25% (w/v) NaCl and the isolates grow optimally at 20% (w/v) NaCl. The pH range for growth was 6 to 9.5 with an optimum at pH 7.5 for the first strain and 7 to 9.5 with an optimum pH at 8.5-9 for the second strain. On the basis of 16S rRNA gene sequence analysis, strains JCM13561 and A33T were most closely related to Halorubrum litoreum and Natronorubrum bangense (99% and 96% similarity, respectively).


Assuntos
DNA Arqueal/genética , Halobacteriaceae/isolamento & purificação , Halorubrum/isolamento & purificação , Lagos/microbiologia , RNA Ribossômico 16S/genética , África do Norte , Argélia , Halobacteriaceae/classificação , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/genética , Halorubrum/classificação , Halorubrum/efeitos dos fármacos , Halorubrum/genética , Concentração de Íons de Hidrogênio , Salinidade , Análise de Sequência de DNA , Cloreto de Sódio/farmacologia
6.
Biochem Biophys Res Commun ; 498(4): 810-816, 2018 04 15.
Artigo em Inglês | MEDLINE | ID: mdl-29530530

RESUMO

Bacteriocin LB44 was purified from cell-free supernatant (CFS) of Pediococcus pentosaceus LB44 using activity-guided chromatography techniques. It was stable up to 121 °C, pH 2.0-6.0, sensitive to proteinase K, papain and trypsin, and retained complete activity in the presence of organic solvents tested. The molecular weight of bacteriocin was ∼6 kDa and initial ten amino acid residues (GECGMCXECG) suggested a new compound. The loss in viable cell count and K+ ion efflux of target cells of Micrococcus luteus suggested bactericidal activity. The cell membrane of bacteriocin-treated cells was found to be ruptured which was further confirmed by Fourier Transform Infrared (FTIR) analysis suggesting interaction of bacteriocin with phospholipids in cell membrane. It showed broad host-range and inhibited the growth of Lactobacillus delbrueckii NRRL B-4525, L. plantarum NRRL B-4496, L. acidophilus NRRL B-4495, Enterococcus hirae LD3, Weissella confusa LM85, Staphylococcus aureus, Salmonella typhi ATCC 13311, Serratia marcescens ATCC 27137, Pseudomonas aeruginosa ATCC 27853, Proteus vulgaris ATCC 29905, Haloferax larsenii HA1, HA3, HA8, HA9 and HA10. These properties suggested a new bacteriocin from soil isolate P. pentosaceus LB44 which may offers possible applications in food-safety and therapeutics.


Assuntos
Antibacterianos/isolamento & purificação , Antibacterianos/farmacologia , Bactérias/efeitos dos fármacos , Bacteriocinas/isolamento & purificação , Bacteriocinas/farmacologia , Pediococcus pentosaceus/química , Sequência de Aminoácidos , Antibacterianos/química , Infecções Bacterianas/tratamento farmacológico , Bacteriocinas/química , Microbiologia de Alimentos , Halobacteriaceae/efeitos dos fármacos , Humanos , Microbiologia do Solo
7.
PLoS One ; 12(9): e0184974, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28926633

RESUMO

The halophilic archaea (haloarchaea) live in hyersaline environments such as salt lakes, salt ponds and marine salterns. To cope with the salt stress conditions, haloarchaea have developed two fundamentally different strategies: the "salt-in" strategy and the "compatible-solute" strategy. Although investigation of the molecular mechanisms underlying the tolerance to high salt concentrations has made outstanding achievements, experimental study from the aspect of transcription is rare. In the present study, we monitored cellular physiology of Natrinema sp. J7-2 cells incubated in different salinity media (15%, 25% and 30% NaCl) from several aspects, such as cellular morphology, growth, global transcriptome and the content of intracellular free amino acids. The results showed that the cells were polymorphic and fragile at a low salt concentration (15% NaCl) but had a long, slender rod shape at high salt concentrations (25% and 30% NaCl). The cells grew best in 25% NaCl, mediocre in 30% NaCl and struggled in 15% NaCl. An RNA-seq analysis revealed differentially expressed genes (DEGs) in various salinity media. A total of 1,148 genes were differentially expressed, consisting of 719 DEGs (348 up-regulated and 371 down-regulated genes) between cells in 15% vs 25% NaCl, and 733 DEGs (521 up-regulated and 212 down-regulated genes) between cells in 25% vs 30% NaCl. Moreover, 304 genes were commonly differentially expressed in both 15% vs 25% and 25% vs30% NaCl. The DEGs were enriched in different KEGG metabolic pathways, such as amino acids, glycerolipid, ribosome, nitrogen, protoporphyrin, porphyrin and porhiniods. The intracellular predominant free amino acids consisted of the glutamate family (Glu, Arg and Pro), aspartate family (Asp) and aromatic amino acids (Phe and Trp), especially Glu and Asp.


Assuntos
Halobacteriaceae/metabolismo , Cloreto de Sódio/farmacologia , Transcriptoma/efeitos dos fármacos , Aminoácidos/metabolismo , Regulação para Baixo/efeitos dos fármacos , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/crescimento & desenvolvimento , Microscopia Eletrônica , Porfirinas/metabolismo , RNA/química , RNA/isolamento & purificação , RNA/metabolismo , Análise de Sequência de RNA , Regulação para Cima/efeitos dos fármacos
8.
Microbiol Res ; 199: 19-28, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28454706

RESUMO

Salar de Uyuni, situated in the Southwest of the Bolivian Altiplano, is the largest salt flat on Earth. Brines of this athalassohaline hypersaline environment are rich in lithium and boron. Due to the ever- increasing commodity demand, the industrial exploitation of brines for metal recovery from the world's biggest lithium reservoir is likely to increase substantially in the near future. Studies on the composition of halophilic microbial communities in brines of the salar have not been published yet. Here we report for the first time on the prokaryotic diversity of four brine habitats across the salar. The brine is characterized by salinity values between 132 and 177 PSU, slightly acidic to near-neutral pH and lithium and boron concentrations of up to 2.0 and 1.4g/L, respectively. Community analysis was performed after sequencing the V3-V4 region of the 16S rRNA genes employing the Illumina MiSeq technology. The mothur software package was used for sequence processing and data analysis. Metagenomic analysis revealed the occurrence of an exclusively archaeal community comprising 26 halobacterial genera including only recently identified genera like Halapricum, Halorubellus and Salinarchaeum. Despite the high diversity of the halobacteria-dominated community in sample P3 (Shannon-Weaver index H'=3.12 at 3% OTU cutoff) almost 40% of the Halobacteriaceae-assigned sequences could not be classified on the genus level under stringent filtering conditions. Even if the limited taxonomic resolution of the V3-V4 region for halobacteria is considered, it seems likely to discover new, hitherto undescribed genera of the family halobacteriaceae in this particular habitat of Salar de Uyuni in future.


Assuntos
Biodiversidade , Lítio/química , Consórcios Microbianos , Salinidade , Archaea/classificação , Archaea/efeitos dos fármacos , Archaea/genética , Archaea/isolamento & purificação , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Bolívia , Boro/química , DNA Arqueal/análise , DNA Arqueal/genética , DNA Bacteriano/análise , DNA Bacteriano/genética , DNA Ribossômico/genética , Mapeamento Geográfico , Halobacteriaceae/classificação , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/genética , Concentração de Íons de Hidrogênio , Lagos/microbiologia , Metagenômica , Filogenia , RNA Arqueal/genética , RNA Bacteriano/genética , RNA Ribossômico 16S/genética , Sais/química , Análise de Sequência de DNA , Cloreto de Sódio/metabolismo , Microbiologia do Solo , Microbiologia da Água
9.
Archaea ; 2013: 732864, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-23533331

RESUMO

Haloarchaea are the predominant microflora of hypersaline econiches such as solar salterns, soda lakes, and estuaries where the salinity ranges from 35 to 400 ppt. Econiches like estuaries and solar crystallizer ponds may contain high concentrations of metals since they serve as ecological sinks for metal pollution and also as effective traps for river borne metals. The availability of metals in these econiches is determined by the type of metal complexes formed and the solubility of the metal species at such high salinity. Haloarchaea have developed specialized mechanisms for the uptake of metals required for various key physiological processes and are not readily available at high salinity, beside evolving resistance mechanisms for metals with high solubility. The present paper seeks to give an overview of the main molecular mechanisms involved in metal tolerance in haloarchaea and focuses on factors such as salinity and metal speciation that affect the bioavailability of metals to haloarchaea. Global transcriptomic analysis during metal stress in these organisms will help in determining the various factors differentially regulated and essential for metal physiology.


Assuntos
Resistência Microbiana a Medicamentos , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/metabolismo , Homeostase , Metais/metabolismo , Metais/toxicidade
10.
PLoS One ; 7(7): e41621, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-22911826

RESUMO

Natrinema sp. J7-2 is an extreme haloarchaeon capable of growing on synthetic media without amino acid supplements. Here we report the complete genome sequence of Natrinema sp. J7-2 which is composed of a 3,697,626-bp chromosome and a 95,989-bp plasmid pJ7-I. This is the first complete genome sequence of a member of the genus Natrinema. We demonstrate that Natrinema sp. J7-2 can use gluconate, glycerol, or acetate as the sole carbon source and that its genome encodes complete metabolic pathways for assimilating these substrates. The biosynthetic pathways for all 20 amino acids have been reconstructed, and we discuss a possible evolutionary relationship between the haloarchaeal arginine synthetic pathway and the bacterial lysine synthetic pathway. The genome harbors the genes for assimilation of ammonium and nitrite, but not nitrate, and has a denitrification pathway to reduce nitrite to N(2)O. Comparative genomic analysis suggests that most sequenced haloarchaea employ the TrkAH system, rather than the Kdp system, to actively uptake potassium. The genomic analysis also reveals that one of the three CRISPR loci in the Natrinema sp. J7-2 chromosome is located in an integrative genetic element and is probably propagated via horizontal gene transfer (HGT). Finally, our phylogenetic analysis of haloarchaeal genomes provides clues about evolutionary relationships of haloarchaea.


Assuntos
Aminoácidos/farmacologia , Meios de Cultura/farmacologia , Genoma Arqueal/genética , Halobacteriaceae/crescimento & desenvolvimento , Halobacteriaceae/genética , Aminoácidos/biossíntese , Proteínas Arqueais/genética , Proteínas Arqueais/metabolismo , Sequência de Bases , Vias Biossintéticas/efeitos dos fármacos , Vias Biossintéticas/genética , Metabolismo dos Carboidratos/efeitos dos fármacos , Metabolismo dos Carboidratos/genética , Carbono/metabolismo , Carbono/farmacologia , Halobacteriaceae/efeitos dos fármacos , Dados de Sequência Molecular , Nitrogênio/metabolismo , Nitrogênio/farmacologia , Filogenia
11.
FEMS Microbiol Ecol ; 63(3): 309-15, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-18205815

RESUMO

Antibiotics and bile salts have been used to differentiate between heterotrophic activity of halophilic Archaea and Bacteria in saltern ponds. In NaCl-saturated brines of crystallizer ponds, most activity was attributed to Archaea. Following the recent isolation of Haloquadratum, the dominant archaeon in the salterns (reported to be sensitive to chloramphenicol and erythromycin), and the discovery of Salinibacter, a representative of the Bacteria, in the same ecosystem, reevaluation of the earlier data is required. The authors measured amino acid incorporation by Haloquadratum and Salinibacter suspended in crystallizer brine to investigate the suitability of antibiotics and bile salts to distinguish between archaeal and bacterial activities. The amino acid uptake rate per cell in Salinibacter was two orders of magnitude lower than that of Haloquadratum under the same conditions. Salinibacter was inhibited by chloramphenicol, erythromycin, and deoxycholate, but not by taurocholate. Erythromycin did not inhibit incorporation by Haloquadratum, but moderate inhibition was found by chloramphenicol at 10-50 microg mL(-1). Deoxycholate was highly inhibitory, but only partial inhibition was obtained in the presence of 25 microg mL(-1) taurocholate. Inhibition by chloramphenicol and taurocholate increased with increasing salt concentration. Erythromycin and taurocholate proved most valuable to differentiate between archaeal and bacterial activities in saltern brines.


Assuntos
Antibacterianos/farmacologia , Bacteroidetes/efeitos dos fármacos , Ácidos e Sais Biliares/farmacologia , Água Doce/microbiologia , Halobacteriaceae/efeitos dos fármacos , Cloreto de Sódio , Aminoácidos/metabolismo , Bacteroidetes/crescimento & desenvolvimento , Bacteroidetes/metabolismo , Cloranfenicol/farmacologia , Ecossistema , Eritromicina/farmacologia , Halobacteriaceae/crescimento & desenvolvimento , Halobacteriaceae/metabolismo , Ácido Taurocólico/farmacologia
12.
J Microbiol Biotechnol ; 17(6): 985-92, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18050917

RESUMO

The diversity of archaeal strains from six hypersaline environments in Turkey was analyzed by comparing their phenotypic characteristics and 16S rDNA sequences. Thirty-three isolates were characterized in terms of their phenotypic properties including morphological and biochemical characteristics, susceptibility to different antibiotics, and total lipid and plasmid contents, and finally compared by 16S rDNA gene sequences. The results showed that all isolates belong to the family Halobacteriaceae. Phylogenetic analyses using approximately 1,388 bp comparisions of 16S rDNA sequences demonstrated that all isolates clustered closely to species belonging to 9 genera, namely Halorubrum (8 isolates), Natrinema (5 isolates), Haloarcula (4 isolates), Natronococcus (4 isolates), Natrialba (4 isolates), Haloferax (3 isolates), Haloterrigena (3 isolates), Halalkalicoccus (1 isolate), and Halomicrobium (1 isolate). The results revealed a high diversity among the isolated halophilic strains and indicated that some of these strains constitute new taxa of extremely halophilic archaea.


Assuntos
Halobacteriaceae/classificação , Microbiologia da Água , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/genética , Lipídeos/análise , Filogenia , Plasmídeos , RNA Ribossômico 16S/genética , Cloreto de Sódio
13.
Lett Appl Microbiol ; 44(6): 637-42, 2007 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-17576226

RESUMO

AIMS: The effect of various nitrogen sources and nutritional starvation was examined on the production of an extracellular protease secreted by the haloalkaliphilic archaeon Natrialba magadii. METHODS AND RESULTS: Cell growth and proteolytic activity were measured in cells grown with different nitrogen sources. Proteolytic activity was produced in complex and easily metabolized nitrogen sources such as yeast extract, casein and casamino acids; meanwhile, ammonium repressed enzyme production. The time course and amount of protease accumulated showed an inverse correlation with growth rate and nutrient concentration. Starvation did not induce extracellular protease production. CONCLUSION: The accumulation of Nab. magadii extracellular protease is stimulated by nutrient limitation and slow growth rate indicating that it is probably induced in response to a deficit in the energetic status of the cells. Nutritional starvation did not induce protease accumulation suggesting that de novo synthesis of this protease and/or factor/s necessary for its activation are required. This enzyme may be regulated by nitrogen catabolite repression and it does not require protein substrates for induction. SIGNIFICANCE AND IMPACT OF THE STUDY: These results contribute to the basic knowledge on protease regulation in haloalkaliphilic archaea and will help to optimize the production of this extremozyme for biotechnological applications such as protease-catalysed peptide synthesis.


Assuntos
Proteínas Arqueais/biossíntese , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/enzimologia , Nitrogênio/farmacologia , Peptídeo Hidrolases/biossíntese , Proteínas Arqueais/análise , Técnicas de Cultura de Células , Meios de Cultura/química , Meios de Cultura/farmacologia , Halobacteriaceae/crescimento & desenvolvimento , Nitrogênio/análise , Peptídeo Hidrolases/análise , Leveduras/química
14.
J Ind Microbiol Biotechnol ; 34(2): 111-5, 2007 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-17024426

RESUMO

The effect of various organic solvents on the activity and stability of an extracellular protease produced by the haloalkaliphilic archaeon Natrialba magadii was tested. This protease was active and stable in aqueous-organic solvent mixtures containing 1.5 M NaCl and glycerol, dimethylsulfoxide (DMSO), N,N-dimethyl formamide, propylenglycol, and dioxane. Among the solvents tested, DMSO, propylenglycol, and glycerol were effective in preserving enzyme stability in suboptimal NaCl concentrations. The stabilizing effect of DMSO on this haloalkaliphilic protease was more efficient at pH 8 than at pH 10, suggesting that DMSO may not substitute for salt to allow halophilic proteins to withstand the effect of high pH values. These results show that Nab. magadii extracellular protease is a solvent tolerant enzyme and suggest a potential application of this haloalkaliphilic protease in aqueous-organic solvent biocatalysis.


Assuntos
Halobacteriaceae/enzimologia , Compostos Orgânicos/farmacologia , Peptídeo Hidrolases/efeitos dos fármacos , Cloreto de Sódio/farmacologia , Solventes/farmacologia , Proteínas Arqueais/efeitos dos fármacos , Proteínas Arqueais/metabolismo , Biotecnologia/métodos , Dimetil Sulfóxido/farmacologia , Dioxanos/farmacologia , Estabilidade Enzimática/efeitos dos fármacos , Halobacteriaceae/efeitos dos fármacos , Peptídeo Hidrolases/metabolismo , Propilenoglicol/farmacologia
15.
Mikrobiologiia ; 75(6): 849-56, 2006.
Artigo em Russo | MEDLINE | ID: mdl-17205811

RESUMO

Ninety-five extremely halophilic strains were isolated from six distinct saline regions of Turkey by using complex medium containing 25% NaCl. The selected regions are Tuz Golu (salt lake), Ankara; Aci Lake, Denizli; Salda Lake, Denizli; Seyfe Lake, Kirsehir; Tuzla Lake, Kayseri; and Bolluk Lake, Konya. The isolated strains were tested for motility, Gram reaction, cell and colony morphologies, pigmentation, biochemical characteristics, and antibiotic sensitivities. According to membrane glycerol diether moieties and antibiotic susceptibilities, all isolated strains were found to belong to the domain Archaea. All isolates were examined for the presence of plasmids by agarose gel electrophoresis and it was established that most isolates contained plasmids that varied in number and whose molecular sizes ranged from 1 to 36.9 kbp. Whole-cell protein profiles from isolates were analyzed by SDS-PAGE and a similarity dendogram was constructed using the UPGMA method. Significant similarities and differences were observed among the isolates. The strains were clustered in eight groups and ten of our isolates were placed in the same group with the standard strains. The current study represents the first isolation and characterization of such a large collection of archeal strains from Turkey.


Assuntos
Água Doce/microbiologia , Halobacteriaceae , Microbiologia do Solo , Antibacterianos/farmacologia , Proteínas Arqueais/análise , Meios de Cultura , Eletroforese em Gel de Ágar , Eletroforese em Gel de Poliacrilamida , Halobacteriaceae/química , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/isolamento & purificação , Halobacteriaceae/fisiologia , Peso Molecular , Plasmídeos/análise , Plasmídeos/química , Cloreto de Sódio , Turquia
16.
Biosci Biotechnol Biochem ; 67(8): 1809-12, 2003 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-12951519

RESUMO

Organic solvent tolerance was tested in type strains of type species of the sixteen genera of Halobacteriaceae, the halophilic archaea. Most of the strains were observed to grow in the presence of hexylether (log Pow=5.1), but none grew in the presence of n-octane (log Pow=4.9) except Halogeometricum borinquense JCM 10706T and Halorubrum saccharovorum JCM 8865T. On the other hand, two strains, Haloarcula spp. OHF-1 and 2 isolated from a French solar salt were found to show stronger tolerance even to isooctane (log Pow=4.8). Growth of some strains was retarded by the presence of n-decane but reached to the same cell densities at late stationary phase. Final cell densities of some strains were greatly repressed by the presence of the solvent.


Assuntos
Alcanos/farmacologia , Éter/farmacologia , Halobacteriaceae/crescimento & desenvolvimento , Alcanos/química , Meios de Cultura , Éter/análogos & derivados , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/genética , Solventes , Especificidade da Espécie
17.
Extremophiles ; 4(2): 91-8, 2000 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-10805563

RESUMO

It is now clear that the understanding of halophilic adaptation at a molecular level requires a strategy of complementary experiments, combining molecular biology, biochemistry, and cellular approaches with physical chemistry and thermodynamics. In this review, after a discussion of the definition and composition of halophilic enzymes, the effects of salt on their activity, solubility, and stability are reviewed. We then describe how thermodynamic observations, such as parameters pertaining to solvent-protein interactions or enzyme-unfolding kinetics, depend strongly on solvent composition and reveal the important role played by water and ion binding to halophilic proteins. The three high-resolution crystal structures now available for halophilic proteins are analyzed in terms of haloadaptation, and finally cellular response to salt stress is discussed briefly.


Assuntos
Ativação Enzimática/fisiologia , Estabilidade Enzimática/fisiologia , Enzimas/metabolismo , Halobacteriaceae/enzimologia , Sais/metabolismo , Adaptação Fisiológica , Cristalografia por Raios X , Ativação Enzimática/efeitos dos fármacos , Estabilidade Enzimática/efeitos dos fármacos , Enzimas/química , Enzimas/efeitos dos fármacos , Enzimas/genética , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/fisiologia , Mutagênese Sítio-Dirigida , Conformação Proteica/efeitos dos fármacos , Dobramento de Proteína , Sais/farmacologia , Solubilidade/efeitos dos fármacos , Solventes/metabolismo , Solventes/farmacologia
18.
Extremophiles ; 4(1): 35-41, 2000 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-10741835

RESUMO

Many representatives of the family Halobacteriaceae ("halobacteria") excrete halophilic bacteriocins (halocins) that inhibit the growth of other halobacteria. In spite of the fact that halocin production is widespread among the Halobacteriaceae, no information is available on their ecological significance. To test whether halocins may play a role in the interspecies competition between different types of halobacteria in saltern crystallizer ponds inhabited by dense communities of these red halophiles, we assayed for halocins active against a variety of halobacteria in salterns from different locations worldwide. Detection of halocin activity was based on the inhibition of growth of indicator organisms on agar plates, the decreased incorporation of radiolabeled substrates, and microscopic examinations. No halocin activity was detected in any of the brines examined, in spite of the fact that halocin production was demonstrated in cultures of most microorganisms isolated from these brines. Thus, the contribution of halocins in the competition between different halobacteria in hypersaline aquatic environments is probably negligible.


Assuntos
Bacteriocinas/farmacologia , Halobacteriaceae/metabolismo , Proteínas Arqueais/análise , Bacteriocinas/análise , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/crescimento & desenvolvimento , Israel , Sais , Espanha
19.
Microbiology (Reading) ; 142 ( Pt 7): 1715-23, 1996 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-8757736

RESUMO

The transcription of the 14 gvp genes of the gas-vesicle-encoding mc-vac region was investigated, using RNA from 25% and 15% (w/v) salt cultures of the moderately halophilic archaeon Haloferax mediterranei. Transcription occurred only from two promoters, located in front of the mc-gvpA and mc-gvpD genes. In both cultures transcripts spanning the entire mc-gvpDEFGHIJKLM transcription unit were formed only during the exponential growth phase. Amounts of these transcripts were larger in the 25% salt culture, in which the 2.0 kb mc-gvpD transcripts were also synthesized during the stationary phase. The levels of the mc-gvpD transcripts and of the 324 nt mc-gvpA mRNA increased in parallel during the stationary phase of the 25% salt culture. Only under these conditions were mRNAs spanning the entire mc-gvpACNO transcription unit observed, and gas-vesicles were formed. Investigation of the influence of the mc-gvpDE genes on both mc-vac promoters in transformants revealed that by themselves they were nearly inactive. The addition of mc-gvpE, however, resulted in a high level of constitutively produced mc-gvpA and mc-gvpD mRNA, indicating a transcriptional activator function for the mc-gvpE product.


Assuntos
Proteínas Arqueais , Genes Bacterianos , Halobacteriaceae/genética , Proteínas de Membrana , Proteínas , Proteínas da Membrana Bacteriana Externa/genética , Sequência de Bases , Mapeamento Cromossômico , Primers do DNA/genética , DNA Bacteriano/química , DNA Bacteriano/genética , Halobacteriaceae/efeitos dos fármacos , Halobacteriaceae/crescimento & desenvolvimento , Dados de Sequência Molecular , Conformação de Ácido Nucleico , Regiões Promotoras Genéticas , RNA Bacteriano/genética , RNA Bacteriano/isolamento & purificação , RNA Bacteriano/metabolismo , RNA Mensageiro/genética , RNA Mensageiro/isolamento & purificação , RNA Mensageiro/metabolismo , Cloreto de Sódio/farmacologia , Transativadores , Transcrição Gênica/efeitos dos fármacos
20.
Arch Microbiol ; 165(5): 354-8, 1996 May.
Artigo em Inglês | MEDLINE | ID: mdl-8661928

RESUMO

Many members of the Halobacteriaceae are inhibited by quinolone compounds, which inhibit type II DNA topoisomerase. Ciprofloxacin was the most potent inhibitor, followed by ofloxacin and norfloxacin. Ciprofloxacin concentration between 25 and 60 micrograms/ml caused 50% inhibition of the growth of most Haloferax and Haloarcula species. Halobacterium species were less sensitive, At sublethal concentrations, formation of elongated and/or swollen cells was observed in many species. The alkaliphilic Natronobacterium pharaonis was very sensitive (50% inhibition by ciprofloxacin, ofloxacin, and norfloxacin at concentrations between 4 and 15 micrograms/ml). The resistance of many members of the Halobacteriaceae to high concentrations of quinolone compounds may in part be due to the high magnesium concentrations present in the growth media. Haloferax volcanii was sensitive to 40 micrograms/ml ciprofloxacin when grown at suboptimal magnesium concentrations (0.1 M), but was hardly affected by 100 micrograms/ml of the inhibitor when grown in the presence of 0.5-0.75 M MgCl2. It is suggested that the putative archaeal type II DNA topoisomerase has properties similar to those of the enzyme from Bacteria, although its sensitivity to quinolone antimicrobial compounds may be lower.


Assuntos
Anti-Infecciosos/farmacologia , Halobacteriaceae/efeitos dos fármacos , Archaea/efeitos dos fármacos , Ciprofloxacina/farmacologia , Resistência Microbiana a Medicamentos , Halobacteriaceae/crescimento & desenvolvimento , Magnésio/farmacologia , Microscopia de Contraste de Fase
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