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1.
Protein Sci ; 33(7): e5064, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38864722

RESUMO

Due to the low temperature, the Antarctic marine environment is challenging for protein functioning. Cold-adapted organisms have evolved proteins endowed with higher flexibility and lower stability in comparison to their thermophilic homologs, resulting in enhanced reaction rates at low temperatures. The Antarctic bacterium Pseudoalteromonas haloplanktis TAC125 (PhTAC125) genome is one of the few examples of coexistence of multiple hemoglobin genes encoding, among others, two constitutively transcribed 2/2 hemoglobins (2/2Hbs), also named truncated Hbs (TrHbs), belonging to the Group II (or O), annotated as PSHAa0030 and PSHAa2217. In this work, we describe the ligand binding kinetics and their interrelationship with the dynamical properties of globin Ph-2/2HbO-2217 by combining experimental and computational approaches and implementing a new computational method to retrieve information from molecular dynamic trajectories. We show that our approach allows us to identify docking sites within the protein matrix that are potentially able to transiently accommodate ligands and migration pathways connecting them. Consistently with ligand rebinding studies, our modeling suggests that the distal heme pocket is connected to the solvent through a low energy barrier, while inner cavities play only a minor role in modulating rebinding kinetics.


Assuntos
Proteínas de Bactérias , Pseudoalteromonas , Hemoglobinas Truncadas , Pseudoalteromonas/metabolismo , Pseudoalteromonas/genética , Pseudoalteromonas/química , Cinética , Hemoglobinas Truncadas/química , Hemoglobinas Truncadas/metabolismo , Hemoglobinas Truncadas/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Proteínas de Bactérias/genética , Simulação de Dinâmica Molecular , Regiões Antárticas , Ligantes
2.
Int J Biol Macromol ; 254(Pt 3): 128112, 2024 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-37972845

RESUMO

Bacterial hemoglobins play important roles inside the cell. Phylogenetically, they belong to three different families: the single domain hemoglobin, flavohemoglobin and truncated hemoglobin. Vitreoscilla hemoglobin (VHb) is the first characterized bacterial hemoglobin, and belongs to the single domain hemoglobin family. Heterologous expression of VHb promotes the growth of host cells under microaerobic conditions, and enhances the yield of products during fermentation. Although VHb has been widely applied in the biotechnology field, other bacterial hemoglobins have not demonstrated similar applications. In this study, we identified four bacterial hemoglobins from the microaerobic growing bacterium Sphaerotilus natans, including one flavohemoglobins (FHB) and three truncated hemoglobins (THB1, THB2 and THB3). Absorption spectrum studies validate the existent of the Soret peak and Q-band characteristic to heme and suggest heme groups in FHB and THB1 are hexa- or penta-coordinated, respectively. Our studies demonstrate that FHB and all three truncated hemoglobins have NADH oxidation and radical production activities, which is surprising since truncated hemoglobins do not have a reductase domain that could bind NADH. However, the M. tuberculosis HbN does not show these activities, indicating they are not universal among truncated hemoglobins. Docking studies suggest the nicotinamide ring of NADH may bind to the distal heme pocket of THB1, suggesting the direct electron transfer from NADH to heme might be possible. Our truncated hemoglobins also show peroxidase activities that in THB2 and THB3 could be inhibited by FdR, indicating possible interactions between FdR and truncate hemoglobins. Expression of FHB and THB1 in E. coli could promote cell growth. THB1 also enhances the production of limonene in an engineered E. coli strain, while VHb does not have this effect, which suggests that studies on truncated hemoglobins may lead to the discovery of new and more powerful tools that could have profound impact on biotechnology.


Assuntos
Escherichia coli , Hemoglobinas Truncadas , Humanos , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo , Escherichia coli/metabolismo , Limoneno , NAD/metabolismo , Hemoglobinas/genética , Hemoglobinas/metabolismo , Proteínas de Bactérias/metabolismo , Heme/metabolismo
3.
Gene ; 841: 146759, 2022 Oct 20.
Artigo em Inglês | MEDLINE | ID: mdl-35933051

RESUMO

Although truncated hemoglobin O, (trHbO), is ubiquitous among mycobacteria, its physiological function is not very obvious and may be diverse. In an attempt to understand role of trHbO in cellular metabolism of a non-pathogenic mycobacterium, we analysed expression profile of the glbO gene, encoding trHbO, in M. smegmatis and studied implications of its overexpression on physiology of its host under different environmental conditions. Quantitative RT-PCR indicated that transcript level of the glbO gene remains low at a basal level under aerobic growth cycle of M. smegmatis but its level gets induced significantly during low oxygen, oxidative stress and macrophage infection. Overexpression of the glbO gene enhanced growth of M. smegmatis under hypoxia, promoted pellicle biofilm formation and provided resistance towards oxidative stress. Additionally, glbO gene overexpressing M. smegmatis exhibited enhanced cell survival over isogenic control cells and altered the level of pro- and anti- inflammatory cytokines during intracellular infection. These results suggested important role of trHbO, in supporting the cellular metabolism and survival of M, smegmatis both under low oxygen and oxidative stress.


Assuntos
Mycobacterium , Hemoglobinas Truncadas , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Hipóxia , Mycobacterium smegmatis/genética , Mycobacterium smegmatis/metabolismo , Estresse Oxidativo/genética , Oxigênio , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo
4.
Appl Microbiol Biotechnol ; 106(9-10): 3657-3667, 2022 May.
Artigo em Inglês | MEDLINE | ID: mdl-35579683

RESUMO

Oxidases are a group of oxidoreductases and need molecular oxygen in the catalytic process. Vitreoscilla hemoglobin (VHb) can improve the growth and productivity of host cells under hypoxic conditions, rendering it attractive for industrial application. In this work, we demonstrated the addition of immobilized VHb increased the catalytic activity of immobilized D-amino acid oxidase of Trigonopsis variabilis by two-fold when catalyzing cephalosporin C under oxygen-limited conditions. A similar increase of activities was observed in glucose oxidase, alcohol oxidase, and p-hydroxymandelate synthase by adding free VHb or immobilized VHb under hypoxic conditions. When L-glutamate oxidase was used to catalyze L-glutamate to produce α-ketoglutarate, the yield increased from 80.6 to 96.9% by fusing VHb with L-glutamate oxidase. Results demonstrated that the addition of free VHb, immobilized VHb, or fused VHb could increase the catalytic efficiency of oxidases, which was considered by increasing the concentration of the microenvironmental oxygen. Thus, VHb may become a potential additive agent to promote the efficiency of oxidases on industrial scale . KEY POINTS: • First time confirmation of facilitation of VHb on several industrial oxidases in vitro • VHb functions under hypoxic conditions rather than oxygen-enriched conditions • VHb functions in vitro in the form of free, immobilized protein and fusion enzyme.


Assuntos
Oxirredutases , Vitreoscilla , Proteínas de Bactérias/metabolismo , Escherichia coli/metabolismo , Hemoglobinas/química , Hemoglobinas/metabolismo , Oxirredutases/metabolismo , Oxigênio/metabolismo , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo , Vitreoscilla/genética
5.
Biotechnol Lett ; 44(4): 595-604, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-35288781

RESUMO

Oxygen availability is a limiting factor for lipid biosynthesis in eukaryotic microorganisms. Two bacterial hemoglobins from Vitreoscilla sp. (VHb) and Shinorhizobium meliloti (SHb), which deliver oxygen to the respiratory chain to produce more ATP, were introduced into Mucor circinelloides to alleviate oxygen limitation, thereby improving cell growth and fatty acid production. The VHb and SHb genes were integrated into the M. circinelloides MU402 genome by homologous recombination. VHb and SHb protein expression was verified by carbon monoxide difference spectrum analysis. The biomass was increased by ~ 50% in the strain expressing SHb compared with VHb. The total fatty acid (TFA) content of the strain expressing SHb reached 15.7% of the dry cell weight (~ 40% higher than that of the control strain) during flask cultivation. The biomass and TFA content were markedly increased (12.1 g/L and 21.1% dry cell weight, respectively) in strains expressing SHb than strains expressing VHb during fermenter cultivation. VHb and SHb expression also increased the proportion of polyunsaturated fatty acids. Overexpressed bacterial hemoglobins, especially SHb, increased cell growth and TFA content in M. circinelloides at low and high aeration, suggesting that SHb improves fatty acid production more effectively than VHb in oleaginous microorganisms.


Assuntos
Metabolismo dos Lipídeos , Mucor , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Ácidos Graxos/metabolismo , Hemoglobinas/metabolismo , Mucor/genética , Mucor/metabolismo , Oxigênio/metabolismo , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo
6.
Bioresour Technol ; 342: 125965, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34563820

RESUMO

Androstenone production is limited by low-efficiency substrate transport and dissolved oxygen levels during fermentation. In this study, the coexpression of the optimized Vitreoscilla hemoglobin (VHb) and sterol transporter ATPase (MceG) genes in Mycobacterium sp. LZ2 (Msp) was investigated to alleviate dissolved oxygen and mass transfer limitations. Results revealed that Msp-vgb/mceG effectively improved the growth, production, and adaptation to dissolved oxygen compared with those of Msp. The increased catalase activity and reduced intracellular ROS levels enhanced cell viability and promoted transcription of genes critical for phytosterol metabolism. Bagasse as an immobilization carrier increased the productivity of Msp-vgb/mceG by 56%. Immobilized repeat batch fermentation reduced the biotransformation period from 60 days to 37 days and improved the productivity from 0.039 g/L/h to 0.069 g/L/h. To the best of our knowledge, this work is the first study on the immobilization of recombinant mycobacteria on bagasse for androstenone production.


Assuntos
Mycobacterium , Hemoglobinas Truncadas , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Fermentação , Mycobacterium/genética , Mycobacterium/metabolismo , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo
7.
J Photochem Photobiol B ; 221: 112237, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-34116318

RESUMO

Nannochloropsis oceanica is widely used as a model photosynthetic chassis to produce fatty acids and carotenoid pigments. However, intense light typically causes excessive generation of reactive oxygen species (ROS) and photorespiration in microalgal cells, which results in decreased cell growth rate and unsaturated fatty acid content. In this study, the Vitreoscilla hemoglobin gene (vgb) was introduced into N. oceanica cells and expressed by using the light-harvesting complex promoter and its signal peptide. Compared with wild type (WT), the growth rate of transformants increased by 7.4%-18.5%, and the eicosapentaenoic acid content in an optimal transformant increased by 21.0%. Correspondingly, the intracellular ROS levels decreased by 56.9%-70.0%, and the catalase content in transformants was about 1.8 times that of WT. The photorespiration level of transformants was reduced by the measurement and calculation of the dissolved oxygen concentration under the condition of light-dark transition. The expression level of the key genes related to the photorespiration pathway in transformants was more than 80% lower than that in WT. These results indicated that Vitreoscilla hemoglobin could improve microalgal growth by reducing ROS damage and modulating photorespiration under stress conditions.


Assuntos
Proteínas de Bactérias/metabolismo , Luz , Estramenópilas/metabolismo , Hemoglobinas Truncadas/metabolismo , Oxirredutases do Álcool/genética , Oxirredutases do Álcool/metabolismo , Proteínas de Bactérias/genética , Catalase/metabolismo , Complexos de Proteínas Captadores de Luz/genética , Fotossíntese/efeitos da radiação , Plasmídeos/genética , Plasmídeos/metabolismo , Regiões Promotoras Genéticas , Sinais Direcionadores de Proteínas/genética , Espécies Reativas de Oxigênio/metabolismo , Estramenópilas/efeitos da radiação , Hemoglobinas Truncadas/genética
8.
J Inorg Biochem ; 220: 111455, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-33882423

RESUMO

THB1 is a monomeric truncated hemoglobin from the green alga Chlamydomonas reinhardtii. In the absence of exogenous ligands and at neutral pH, the heme group of THB1 is coordinated by two protein residues, Lys53 and His77. THB1 is thought to function as a nitric oxide dioxygenase, and the distal binding of O2 requires the cleavage of the Fe-Lys53 bond accompanied by protonation and expulsion of the lysine from the heme cavity into the solvent. Nuclear magnetic resonance spectroscopy and crystallographic data have provided dynamic and structural insights of the process, but the details of the mechanism have not been fully elucidated. We applied a combination of computer simulations and site-directed mutagenesis experiments to shed light on this issue. Molecular dynamics simulations and hybrid quantum mechanics/molecular mechanics restrained optimizations were performed to explore the nature of the transition between the decoordinated and lysine-bound states of the ferrous heme in THB1. Lys49 and Arg52, which form ionic interactions with the heme propionates in the X-ray structure of lysine-bound THB1, were observed to assist in maintaining Lys53 inside the protein cavity and play a key role in the transition. Lys49Ala, Arg52Ala and Lys49Ala/Arg52Ala THB1 variants were prepared, and the consequences of the replacements on the Lys (de)coordination equilibrium were characterized experimentally for comparison with computational prediction. The results reinforced the dynamic role of protein-propionate interactions and strongly suggested that cleavage of the Fe-Lys53 bond and ensuing conformational rearrangement is facilitated by protonation of the amino group inside the distal cavity.


Assuntos
Proteínas de Algas/metabolismo , Lisina/metabolismo , Hemoglobinas Truncadas/metabolismo , Proteínas de Algas/química , Proteínas de Algas/genética , Chlamydomonas reinhardtii/química , Teoria da Densidade Funcional , Ferro/química , Ferro/metabolismo , Lisina/química , Modelos Químicos , Simulação de Dinâmica Molecular , Mutagênese Sítio-Dirigida , Mutação , Ligação Proteica , Conformação Proteica , Hemoglobinas Truncadas/química , Hemoglobinas Truncadas/genética
9.
Int J Biol Macromol ; 171: 465-479, 2021 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-33428952

RESUMO

The ubiquitous nature of hemoglobins, their presence in multiple forms and low cellular expression in organisms suggests alternative physiological functions of hemoglobins in addition to oxygen transport and storage. Previous research has proposed enzymatic function of hemoglobins such as nitric oxide dioxygenase, nitrite reductase and hydroxylamine reductase. In all these enzymatic functions, active ferrous form of hemoglobin is converted to ferric form and reconversion of ferric to ferrous through reduction partners is under active investigation. The model alga C. reinhardtii contains multiple globins and is thus expected to have multiple putative methemoglobin reductases to augment the physiological functions of the novel hemoglobins. In this regard, three putative methemoglobin reductases and three algal hemoglobins were characterized. Our results signify that the identified putative methemoglobin reductases can reduce algal methemoglobins in a nonspecific manner under in vitro conditions. Enzyme kinetics of two putative methemoglobin reductases with methemoglobins as substrates and in silico analysis support interaction between the hemoglobins and the two reduction partners as also observed in vitro. Our investigation on algal methemoglobin reductases underpins the valuable chemistry of nitric oxide with the newly discovered hemoglobins to ensure their physiological relevance, with multiple hemoglobins probably necessitating the presence of multiple reductases.


Assuntos
Chlamydomonas reinhardtii/enzimologia , Citocromo-B(5) Redutase/fisiologia , Oxigenases/metabolismo , Proteínas de Plantas/fisiologia , Hemoglobinas Truncadas/metabolismo , Técnicas de Química Analítica , Chlamydomonas reinhardtii/genética , Chlamydomonas reinhardtii/metabolismo , Sequência Conservada , Citocromo-B(5) Redutase/química , Citocromo-B(5) Redutase/genética , Citocromo-B(5) Redutase/isolamento & purificação , Humanos , Cinética , Metemoglobina/metabolismo , Modelos Moleculares , Simulação de Acoplamento Molecular , Oxirredução , Proteínas de Plantas/isolamento & purificação , Conformação Proteica , Domínios Proteicos , Proteínas Recombinantes/metabolismo , Alinhamento de Sequência , Homologia de Sequência de Aminoácidos , Eletricidade Estática , Especificidade por Substrato , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/isolamento & purificação
10.
J Biosci Bioeng ; 131(5): 518-524, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33487552

RESUMO

The miglitol intermediate, 6-(N-hydroxyethyl)-amino-6-deoxy-α-l-sorbofuranose (6NSL), is catalyzed from N-2-hydroxyethyl glucamine (NHEG) by resting cells of Gluconobacter oxydans. One of the key factors limiting 6NSL production was the availability of oxygen during both cell cultivation and biotransformation of NHEG to 6NSL. Based on G. oxydans/pBBR1-sldAB-pqqABCDE-tldD (G. oxydans/AB-PQQ), the Vitreoscilla hemoglobin (VHb) was heterologously expressed in G. oxydans to enhance oxygen transfer efficiency and improve 6NSL production. The recombinant G. oxydans/AB-PQQ-VHb displayed higher biomass and NHEG oxidation activity than the control stain. The transcription levels of respiratory chain-related enzyme genes in G. oxydans/AB-PQQ-VHb exhibited up-regulation, indicating that the presence of VHb promoted the respiration. The dissolved oxygen (DO) concentration for cell cultivation was optimized in a 5-L stirred bioreactor. At a DO concentration of 20%, the maximum volumetric oxidation activity of NHEG of G. oxydans/AB-PQQ-VHb in the stirred bioreactor reached 168.3 ± 3.2 U/L. Furthermore, the biotransformation of NHEG to 6NSL using G. oxydans/AB-PQQ-VHb was carried out under different oxygen tensions to investigate the effect of oxygen on 6NSL production. Finally, up to 87.5 ± 5.9 g/L 6NSL was accumulated in the reaction mixture within 16 h when the DO was controlled at 30%.


Assuntos
Proteínas de Bactérias/genética , Furanos/metabolismo , Gluconobacter oxydans/enzimologia , L-Iditol 2-Desidrogenase/genética , L-Iditol 2-Desidrogenase/metabolismo , Oxigênio/metabolismo , Engenharia de Proteínas , Hemoglobinas Truncadas/genética , Reatores Biológicos , Fermentação , Furanos/química , Expressão Gênica , Oxirredução
11.
Biotechnol Lett ; 42(11): 2169-2178, 2020 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-32691185

RESUMO

OBJECTIVE: To enhance the glucaric acid (GA) production in Saccharomyces cerevisiae, the Vitreoscilla hemoglobin was employed to reinforce cellular oxygen supplement. Additionally, the pH-free fermentation strategy was engaged to lower the cost brought by base feeding during the acid-accumulated and long-period glucaric acid production. RESULTS: Recombinant yeast Bga-4 was constructed harboring Vitreoscilla hemoglobin on the basis of previous Bga-3. Higher glucose uptake rate, growth rate, and ethanol reuse rate were achieved in Bga-4 in shake-flask fermentation than those in Bga-3. Furthermore, the fed-batch fermentation in a 5-L bioreactor was performed without pH control, resulting in a final glucaric acid titer of 6.38 g/L. CONCLUSIONS: Both the GA titer and biomass were enhanced along with the efficiency of ethanol re-utilization in the presence of VHb. Moreover, the absence of base feeding for long-period fermentation reduced production cost, which is meaningful for industrial applications.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Ácido Glucárico/metabolismo , Saccharomyces cerevisiae/crescimento & desenvolvimento , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo , Técnicas de Cultura Celular por Lotes , Biomassa , Reatores Biológicos/microbiologia , Clonagem Molecular , Fermentação , Proteínas Recombinantes/metabolismo , Saccharomyces cerevisiae/genética
12.
J Microbiol Biotechnol ; 30(10): 1592-1596, 2020 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-32699196

RESUMO

The aerobic growth and metabolic performance of Escherichia coli strains BL21 and W3110 were studied when the Vitreoscilla hemoglobin (VHb) was constitutively expressed in the chromosome. When VHb was expressed, acetate production decreased in both strains and was nearly eliminated in BL21. Transcriptional levels of the glyoxylate shunt genes decreased in both strains when VHb was expressed. However, higher transcription of the α-ketoglutarate dehydrogenase genes were observed for W3110, while for BL21 transcription levels decreased. VHb expression reduced the transcription of the cytochrome bo3 genes only in BL21. These results are useful for better selecting a production host.


Assuntos
Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Regulação Bacteriana da Expressão Gênica , Hemoglobinas Truncadas/genética , Hemoglobinas Truncadas/metabolismo , Proteínas de Ligação a DNA , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Hemeproteínas , Recombinases Rec A , Transcriptoma
13.
Cells ; 8(9)2019 08 21.
Artigo em Inglês | MEDLINE | ID: mdl-31438612

RESUMO

Truncated hemoglobins (trHbs) form a widely distributed family of proteins found in archaea, bacteria, and eukaryotes. Accumulating evidence suggests that trHbs may be implicated in functions other than oxygen delivery, but these roles are largely unknown. Characterization of the conditions that affect trHb expression and investigation of their regulatory mechanisms will provide a framework for elucidating the functions of these globins. Here, the transcription of Chlamydomonas trHb genes (THB1-12) under conditions of phosphorus (P) deprivation was analyzed. Three THB genes, THB1, THB2, and THB12 were expressed at the highest level. For the first time, we demonstrate the synthesis of nitric oxide (NO) under P-limiting conditions and the production of NO by cells via a nitrate reductase-independent pathway. To clarify the functions of THB1 and THB2, we generated and analyzed strains in which these THBs were strongly under-expressed by using an artificial microRNA approach. Similar to THB1 knockdown, the depletion of THB2 led to a decrease in cell size and chlorophyll levels. We provide evidence that the knockdown of THB1 or THB2 enhanced NO production under P deprivation. Overall, these results demonstrate that THB1 and THB2 are likely to contribute, at least in part, to acclimation responses in P-deprived Chlamydomonas.


Assuntos
Chlamydomonas/metabolismo , Óxido Nítrico/metabolismo , Fósforo/deficiência , Hemoglobinas Truncadas/metabolismo , Células Cultivadas , Chlamydomonas/citologia , Microscopia Confocal , Fósforo/metabolismo , Hemoglobinas Truncadas/genética
14.
Bioprocess Biosyst Eng ; 42(9): 1457-1466, 2019 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-31079222

RESUMO

Escherichia coli strains W3110 and BL21 were engineered for the production of plasmid DNA (pDNA) under aerobic and transitions to microaerobic conditions. The gene coding for recombinase A (recA) was deleted in both strains. In addition, the Vitreoscilla hemoglobin (VHb) gene (vgb) was chromosomally inserted and constitutively expressed in each E. coli recA mutant and wild type. The recA inactivation increased the supercoiled pDNA fraction (SCF) in both strains, while VHb expression improved the pDNA production in W3110, but not in BL21. Therefore, a codon-optimized version of vgb was inserted in strain BL21recA-, which, together with W3110recA-vgb+, was tested in cultures with shifts from aerobic to oxygen-limited regimes. VHb expression lowered the accumulation of fermentative by-products in both strains. VHb-expressing cells displayed higher oxidative activity as indicated by the Redox Sensor Green fluorescence, which was more intense in BL21 than in W3110. Furthermore, VHb expression did not change pDNA production in W3110, but decreased it in BL21. These results are useful for understanding the physiological effects of VHb expression in two industrially relevant E. coli strains, and for the selection of a host for pDNA production.


Assuntos
Escherichia coli/metabolismo , Microrganismos Geneticamente Modificados/metabolismo , Plasmídeos/biossíntese , Aerobiose , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Cromossomos Bacterianos/genética , Cromossomos Bacterianos/metabolismo , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Deleção de Genes , Microrganismos Geneticamente Modificados/genética , Plasmídeos/genética , Recombinases Rec A/genética , Recombinases Rec A/metabolismo , Hemoglobinas Truncadas/biossíntese , Hemoglobinas Truncadas/genética
15.
Int J Biol Macromol ; 132: 701-709, 2019 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-30953719

RESUMO

Overexpression of the optimized Vitreoscilla hemoglobin (VHb) gene and the native flavohemoglobin (FHb) gene in Aureobasidium melanogenum P16 rendered a V6 strain and a F44 strain to overproduce pullulan compared to that produced by their wild type strain P16. The capacity to bind CO and oxygen in the V6 strain and the F44 strain was also obviously enhanced. At the same time, the transcriptional levels of the relevant genes were also increased in the V6 strain and the F44 strain and the fused vgbop + the gene encoding GFP and FHb gene + the gene encoding GFP were also actively expressed. During a 10-liter fermentation, the P16 strain produced only 72.0 ±â€¯1.0 g/L pullulan, the yield was 0.77 g/g of sucrose, the productivity was 0.5 ±â€¯0.01 g/L/h and only 79.4% of the total sugar was used. In contrast, the strain V6 yielded 102.3 ±â€¯1.8 g/L of pullulan, the yield was 0.89 g/g of sucrose, the productivity was 0.7 ±â€¯0.01 g/L/h and 96.0% of total sugar was used while 101.4 ±â€¯2.9 g/L of pullulan was accumulated in the culture of the strain F44, the yield was 0.88 g/g of sucrose, the productivity was 0.7 ±â€¯0.02 g/L/h and 96.4% of total sugar was utilized. These data strongly demonstrated that the concentration of pullulan, yield, productivity and sugar utilization were greatly enhanced by overexpression of the VHb and FHb. But their cell growth was almost the similar.


Assuntos
Proteínas de Bactérias/genética , Biotecnologia , Glucanos/biossíntese , Hemeproteínas/genética , Hemoglobinas Truncadas/genética , Ascomicetos/genética , Ascomicetos/metabolismo , Códon/genética , Fermentação , Expressão Gênica
16.
Bioprocess Biosyst Eng ; 42(8): 1391-1397, 2019 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-31006041

RESUMO

A synthetic plasmid consisting of the minimal elements for replication control of the R1 replicon and kanamycin resistance marker, which was named pminiR1, was developed. pminiR1 production was tested at 30 °C under aerobic and microaerobic conditions in Escherichia coli W3110 recA- (W1). The plasmid DNA yields from biomass (YpDNA/X) were only 0.06 ± 0.02 and 0.22 ± 0.11 mg/g under aerobic and microaerobic conditions, respectively. As an option to increase YpDNA/X values, pminiR1 was introduced in an engineered E. coli strain expressing the Vitreoscilla hemoglobin inserted in chromosome (W12). The YpDNA/X values using strain W12 increased to 0.85 ± 0.05 and 1.53 ± 0.14 mg/g under aerobic and microaerobic conditions, respectively. pminiR1 production in both strains was compared with that of pUC57Kan at 37 °C under aerobic and microaerobic conditions. The YpDNA/X values for pminiR1 using strain W12 were 6.25 ± 0.16 and 9.27 ± 0.95 mg/g under aerobic and microaerobic conditions, respectively. Such yields were similar to those obtained for plasmid pUC57Kan using strain W12 (6.9 ± 0.64 and 10.85 ± 1.06 mg/g for aerobic and microaerobic cultures, respectively). Therefore, the synthetic minimal plasmid based on the R1 replicon is a valuable alternative to pUC plasmids for biotechnological applications.


Assuntos
Escherichia coli , Microrganismos Geneticamente Modificados , Plasmídeos , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Cromossomos Bacterianos/genética , Cromossomos Bacterianos/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Microrganismos Geneticamente Modificados/genética , Microrganismos Geneticamente Modificados/metabolismo , Plasmídeos/biossíntese , Plasmídeos/genética , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/genética , Hemoglobinas Truncadas/biossíntese , Hemoglobinas Truncadas/genética
17.
Microb Biotechnol ; 12(6): 1180-1187, 2019 11.
Artigo em Inglês | MEDLINE | ID: mdl-30821132

RESUMO

Ganoderic acids produced by Ganoderma exhibit anticancer and antimetastatic activities. A novel approach by combining Vitreoscilla haemoglobin (VHb) expression and calcium ion induction was developed to enhance ganoderic acid (GA) production in liquid static cultures of G. lingzhi. The maximum contents of GA-O, GA-S and GA-Me were 1451.33 ± 67.50, 1431.23 ± 79.74 and 1283.81 ± 85.13 µg per 100 mg cell weight, respectively under the integrated approach, which are the highest contents as ever reported in Ganoderma. The contents of squalene and lanosterol were increased by 2.0- and 3.0-fold in this case compared with those in the control. The transcription levels of 3-hydroxy-3-methylglutaryl coenzyme A reductase, farnesyl-diphosphate synthase, squalene synthase and cytochrome P450 CYP5150L8 were upregulated by 2.56-, 3.31-, 2.59- and 6.12-fold respectively. Additionally, the expression of VHb improved the ratio of type I to type II GA in liquid static cultivation of G. lingzhi. The transcription levels of cyp512a2, cyp512v2 and cyp512a13, candidate cytochrome P450 genes involved in oxidative modification of the lanostane skeleton in GA biosynthesis, were also increased by 2.28-, 2.65- and 3.54-fold in the VHb-expressing strain respectively. Our results illustrated that the approach described here efficiently improved GA production in G. lingzhi fermentation.


Assuntos
Proteínas de Bactérias/metabolismo , Cálcio/metabolismo , Ganoderma/metabolismo , Expressão Gênica , Triterpenos/metabolismo , Hemoglobinas Truncadas/metabolismo , Proteínas de Bactérias/genética , Cátions Bivalentes/metabolismo , Enzimas/análise , Ganoderma/genética , Perfilação da Expressão Gênica , Lanosterol/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Esqualeno/metabolismo , Ativação Transcricional , Hemoglobinas Truncadas/genética
18.
Mol Biol Rep ; 46(2): 2101-2110, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30729391

RESUMO

Truncated globins are 20-40 amino acids shorter than full length globins. Till date, globins have been characterized predominantly from bacteria involved in pathogenicity, nitrogen fixation and photosynthesis, where they are implicated in bacterial virulence within the host, protection of nitrogenase from oxygen inactivation and prevention of oxidative damage to the photosynthetic machinery respectively. Myxococcus xanthus, the model myxobacterium, is an obligate aerobe with a multicellular stage in its life cycle where cells encounter oxygen limitation. This work was undertaken to investigate the potential role of the truncated globin in M. xanthus. To examine the role of globins in this unique group of bacteria, the gene coding for a putative truncated globin (HbO) was identified in the genome of M. xanthus DK 1622. The sequence analysis by bioinformatics approaches revealed that HbO from M. xanthus (Mx-HbO) likely adopts a 2-on-2 alpha helical fold of the truncated globins. The gene coding for Mx-HbO was cloned and its expression in E. coli imparted reddish tinge to the cells. The spectral analysis confirmed it to be a functional globin. The expression of Mx-HbO in the heterologous host improved its growth, resulting in the attainment of higher cell density in culture. The transcript of Mx-hbO was induced threefold in the host cells when grown under low aeration condition as compared to the cells grown under high aeration condition. In M. xanthus, an obligate aerobe, where cell growth accompanies swarming, there is a higher density of cells in the middle of the swarm. Our results suggest that Mx-HbO is a functional globin and could facilitate the growth of cells facing oxygen deprivation, the condition prevailing in the middle of the swarm.


Assuntos
Globinas/genética , Myxococcus xanthus/genética , Hemoglobinas Truncadas/genética , Proteínas de Bactérias/metabolismo , Biologia Computacional/métodos , Simulação por Computador , Escherichia coli/genética , Globinas/metabolismo , Myxococcus xanthus/metabolismo , Transcrição Gênica/genética , Hemoglobinas Truncadas/metabolismo
19.
Lett Appl Microbiol ; 68(3): 248-257, 2019 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-30609073

RESUMO

Genetic modification by overexpressing Vitreoscilla haemoglobin (VHb) is an efficient and economic method for improving O2 utilization for microbial fermentation. In this study, VHb was expressed in oleaginous yeast, Yarrowia lipolytica, and its effect on lipid accumulation was analysed. During fermentation, the dissolved oxygen (DO) concentration was controlled at 5, 10, 20 and 30 of full O2 saturation and also uncontrolled by varying the stirring speed and aeration rate. Yarrowia lipolytica harbouring the VHb gene (VHb+ strain) displayed more pseudomycelium than the control strain (VHb- strain), and VHb expression also enhanced the cell density. When DO level was controlled at 30%, the biomass of VHb+ strains reached about 19 g l-1 and increased by 27% compared to VHb- strains. Total fatty acid contents, although, were higher in VHb+ strains than in VHb- strains under all DO levels, and maximally increased by c. 40% (from 10·5 to 14·5% of the biomass) when the DO concentration was controlled at 30%. VHb overexpression, however, markedly suppressed citrate secretion. In addition, expression of VHb also induced significant changes in fatty acid composition and increased the oleic acid content. SIGNIFICANCE AND IMPACT OF THE STUDY: Genetic modification by overexpressing Vitreoscilla haemoglobin (VHb) is an efficient and economic method for improving O2 utilization for microbial fermentation. In this study, VHb was expressed in Yarrowia lipolytica, which is a most attractive model for microbial oil production because of its excellent lipid accumulation capacity and convenient genetic tools. Expression of VHb resulted in lipid accumulation increased and cell morphology shift, however, markedly suppressed citrate secretion. This study provided the new strategy for fermentation technology to improve lipid production in oleaginous micro-organisms.


Assuntos
Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/genética , Lipídeos/biossíntese , Hemoglobinas Truncadas/biossíntese , Hemoglobinas Truncadas/genética , Yarrowia/genética , Yarrowia/metabolismo , Biomassa , Fermentação/fisiologia , Metabolismo dos Lipídeos/fisiologia , Oxigênio/metabolismo
20.
Sci Rep ; 8(1): 17969, 2018 12 19.
Artigo em Inglês | MEDLINE | ID: mdl-30568179

RESUMO

Under hypoxic conditions, the expression of Vitreoscilla hemoglobin (VHb) in plants is proposed to increase the productivity of certain oxygen-requiring metabolic pathways by promoting the delivery of oxygen. Tropane alkaloids (TAs) are a class of important plant secondary metabolites with significant medicinal value; the final step in their biosynthesis requires oxygen. Whether heterologous expression of VHb, especially in different subcellular compartments, can accelerate the accumulation of TAs is not known. Herein, the effect of heterologous expression of VHb in different subcellular locations on the TA profile of H. niger hairy roots was investigated. The targeted expression of VHb in the plastids (using pVHb-RecA construct), led to the accumulation of 197.68 µg/g hyoscyamine in the transgenic H. niger hairy roots, which was 1.25-fold of the content present in the lines in which VHb expression was not targeted, and 3.66-fold of that present in the wild type (WT) lines. The content of scopolamine was increased by 2.20- and 4.70-fold in the pVHb-RecA transgenic lines compared to that in the VHb transgenic and WT lines. Our results demonstrate that VHb could stimulate the accumulation of TAs in the transgenic H. niger hairy roots. Quantitative RT-PCR analysis revealed that the expression of key genes involved in TA biosynthesis increased significantly in the VHb transgenic lines. We present the first description of a highly efficient strategy to increase TA content in H. niger. Moreover, our results also shed light on how the production of desired metabolites can be efficiently enhanced by using more accurate and appropriate genetic engineering strategies.


Assuntos
Proteínas de Bactérias/genética , Expressão Gênica , Hyoscyamus/fisiologia , Raízes de Plantas/fisiologia , Tropanos/metabolismo , Hemoglobinas Truncadas/genética , Proteínas de Bactérias/metabolismo , Vias Biossintéticas , Regulação da Expressão Gênica de Plantas , Espaço Intracelular , Modelos Biológicos , Plantas Geneticamente Modificadas/genética , Transporte Proteico , Transformação Genética , Tropanos/química , Hemoglobinas Truncadas/metabolismo
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