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1.
J Sci Food Agric ; 101(7): 2828-2835, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33135178

RESUMO

BACKGROUND: Nowadays, the craft beer market is booming and the consumer trend for trying something new is increasing. Here, nine different treatments of a craft beer were realized in a pilot plant, studying fermentation and dry-hopping types. Quality parameters of the beer such as polyphenols, antioxidants, bitterness, colour and alcohol were analysed. In addition, an electronic nose was used to distinguish beer types. RESULTS: Results showed that dry hopping in maturation with warm temperature increased the bitterness from 33 to 40 IBUs. The treatment using two yeasts and two fermentation temperatures resulted in the highest antioxidant capacity of the beer (around 92%). Antioxidant activity was increased by late dry hopping using ale yeasts for fermenting. Principal component analysis performed with electronic nose data explained up to 97% of the total variability of the compounds in the study. CONCLUSIONS: Combined use of ale and lager yeasts seems to increase the antioxidant capacity and total polyphenol content of beer. Antioxidant activity is increased by late dry hopping. An electronic nose is a suitable device for discriminating the volatile profile complexity in beer. © 2020 Society of Chemical Industry.


Assuntos
Cerveja/análise , Microbiologia de Alimentos/métodos , Humulus/microbiologia , Antioxidantes/análise , Antioxidantes/metabolismo , Cerveja/microbiologia , Etanol/análise , Etanol/metabolismo , Fermentação , Humanos , Humulus/química , Humulus/classificação , Humulus/metabolismo , Valor Nutritivo , Polifenóis/análise , Polifenóis/metabolismo , Paladar , Leveduras/metabolismo
2.
Viruses ; 11(5)2019 05 05.
Artigo em Inglês | MEDLINE | ID: mdl-31060295

RESUMO

Transcription factors (TFs) play a major role in controlling gene expression by intricately regulating diverse biological processes such as growth and development, the response to external stimuli and the activation of defense responses. The systematic identification and classification of TF genes are essential to gain insight into their evolutionary history, biological roles, and regulatory networks. In this study, we performed a global mining and characterization of hop TFs and their involvement in Citrus bark cracking viroid CBCVd infection by employing a digital gene expression analysis. Our systematic analysis resulted in the identification of a total of 3,818 putative hop TFs that were classified into 99 families based on their conserved domains. A phylogenetic analysis classified the hop TFs into several subgroups based on a phylogenetic comparison with reference TF proteins from Arabidopsis thaliana providing glimpses of their evolutionary history. Members of the same subfamily and subgroup shared conserved motif compositions. The putative functions of the CBCVd-responsive hop TFs were predicted using their orthologous counterparts in A. thaliana. The analysis of the expression profiling of the CBCVd-responsive hop TFs revealed a massive differential modulation, and the expression of the selected TFs was validated using qRT-PCR. Together, the comprehensive integrated analysis in this study provides better insights into the TF regulatory networks associated with CBCVd infections in the hop, and also offers candidate TF genes for improving the resistance in hop against viroids.


Assuntos
Humulus/imunologia , Doenças das Plantas/virologia , Proteínas de Plantas/genética , Fatores de Transcrição/genética , Viroides/fisiologia , Perfilação da Expressão Gênica , Humulus/classificação , Humulus/genética , Humulus/virologia , Filogenia , Casca de Planta/imunologia , Casca de Planta/virologia , Doenças das Plantas/genética , Doenças das Plantas/imunologia , Proteínas de Plantas/imunologia , Fatores de Transcrição/imunologia , Viroides/genética
3.
J Agric Food Chem ; 67(13): 3761-3771, 2019 Apr 03.
Artigo em Inglês | MEDLINE | ID: mdl-30896165

RESUMO

In brewing practice, the use of the appropriate hop variety is essential to produce consistent and high-quality beers. Yet, hop batches of the same variety cultivated in different geographical regions can display significant biochemical differences, resulting in specific taste- and aroma-related characteristics in beer. In this study, we illustrate the complementarity of genetic and biochemical fingerprinting methods to fully characterize hop batches. Using genotyping-by-sequencing (GBS), a set of 1 830 polymorphic single nucleotide polymorphism (SNP) markers generated 48 unique genetic fingerprints for a collection of 56 commercial hop varieties. Three groups of varieties, consisting of somaclonal variants, could not be further differentiated using this set of markers. Biochemical marker information offered added value to characterize hop samples from a given variety grown at different geographical locations. We demonstrate the power of combining genetic and biochemical fingerprints for quality control of hop batches in the brewing industry.


Assuntos
Cerveja/análise , Humulus/genética , Polimorfismo de Nucleotídeo Único , Biomarcadores/análise , Humulus/química , Humulus/classificação
4.
J Agric Food Chem ; 67(1): 364-371, 2019 Jan 09.
Artigo em Inglês | MEDLINE | ID: mdl-30539627

RESUMO

Bottom-fermented and top-fermented beers, both either late or dry hopped with Huell Melon hops, and respective reference beers without late or dry hopping were subjected to a comparative odorant screening by aroma extract dilution analyses. On the basis of differences in the FD factors, 14 odorants were identified as hop-derived. Among them were ethyl 2-methylpropanoate, methyl 2-methylbutanoate, ethyl 2-methylbutanoate, propyl 2-methylbutanoate, myrcene, linalool, and geraniol. Differences between late hopped, dry hopped, and reference beers were substantiated by quantitation. Results showed minimal transfer of myrcene from hops into beer. Moderate transfer was observed for propyl 2-methylbutanoate, geraniol, and linalool. Process-induced changes of ethyl 2-methylpropanoate, ethyl 2-methylbutanoate, and methyl 2-methylbutanoate were beyond a direct transfer from hops into beer, suggesting a formation from the corresponding hop-derived carboxylic acids by yeast. Spiking experiments revealed that linalool and propyl 2-methylbutanoate contributed particularly to the characteristic aroma of beers flavored with Huell Melon hops.


Assuntos
Cerveja/análise , Aromatizantes/metabolismo , Humulus/metabolismo , Leveduras/metabolismo , Adulto , Feminino , Fermentação , Aromatizantes/química , Frutas/química , Frutas/classificação , Frutas/metabolismo , Frutas/microbiologia , Humanos , Humulus/química , Humulus/classificação , Humulus/microbiologia , Masculino , Pessoa de Meia-Idade , Odorantes/análise , Paladar , Adulto Jovem
5.
Electrophoresis ; 39(11): 1399-1409, 2018 06.
Artigo em Inglês | MEDLINE | ID: mdl-29508430

RESUMO

The precursor compounds related to the bitterness of beer are called α-acids. These compounds are extracted from the hop, which is an important ingredient in the brewing process. These compounds were analyzed by capillary electrophoresis. The electrophoretic method used 160 mmol/L of ammonium carbonate (pH 9) as BGE (background electrolyte), a voltage of +20 kV in a capillary with 50 µm of internal diameter and with a 62.5 cm of total length (54 cm effective). The samples were injected in hydrodynamic mode applying a pressure of 25 mbar for 5 s and the analytes were detected at 230 nm. A hydromethanolic extraction during 3 h was considered as the optimum condition for the sample preparation using MeOH/H2 O 80:20 v/v as the extract solution. From the optimized conditions the electropherograms were evaluated for their use as input for chemometric modeling. Preprocessing investigation for electrophoretic data taking into account the alignment, denoising and baseline correction, and variable selection were considered before the chemometric modeling using principal component analysis (PCA). The electrophoretic data were systematically evaluated to find the optimum conditions to modeling. A PCA analysis for all tests was carried out using different preprocessing methods and, an explained variance higher than 90% was achieved in all of them. The optimized chemometric method worked with aligned and meancentered data. From this approach, a simple and efficient method to classify hop samples with high and low α-acids content without the use of analytical standards was established from a simple electrophoretic analysis.


Assuntos
Eletroforese Capilar/métodos , Humulus/química , Ácidos/análise , Ácidos/isolamento & purificação , Cerveja , Humulus/classificação , Extratos Vegetais/análise , Extratos Vegetais/química , Análise de Componente Principal
6.
J Agric Food Chem ; 66(8): 2021-2026, 2018 Feb 28.
Artigo em Inglês | MEDLINE | ID: mdl-29397717

RESUMO

A need exists for a reliable method to determine the geographical and botanical origin of hops. For this study, three sets of samples were collected: the first set comprised 5 German samples; the second set comprised samples of hops from 10 of the world's major hop-growing regions; and the third comprised the 4 main Slovenian regions. The samples were analyzed using isotope ratio mass spectrometry (IRMS) to obtain δ13C, δ15N, and δ34S values. The δ15N (2.2 ‰ to 8.4 ‰) and δ34S (0.7 ‰ to 12.3 ‰) values were the most discriminating parameters for classifying hop according to geographical origin. ANOVA showed distinct groupings for 8 out of the 10 hop-growing regions. Although it was not possible to distinguish the geographical origin of hops based on δ13C (-28.9 ‰ to -24.7 ‰), in the case of botanical origin, δ13C values proved to be the most discriminative albeit with limited success.


Assuntos
Isótopos de Carbono/análise , Humulus/química , Isótopos de Nitrogênio/análise , Isótopos de Enxofre/análise , Análise Discriminante , Geografia , Humulus/classificação , Espectrometria de Massas
7.
J Agric Food Chem ; 66(6): 1452-1460, 2018 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-29376363

RESUMO

The volatiles isolated from samples of the special flavor hop varieties, Huell Melon and Polaris, and from the aroma hop variety, Hallertau Tradition, by solvent extraction and solvent-assisted flavor evaporation (SAFE) were subjected to a comparative aroma extract dilution analysis (cAEDA), which resulted in 46 odor-active compounds in the flavor dilution (FD) factor range of 16 to 2048. On the basis of high FD factors, myrcene, (3R)-linalool, and 2- and 3-methylbutanoic acid were confirmed as important variety-independent hop odorants. (1R,4S)-Calamenene was identified for the first time as an odor-active compound in hops. Clear differences in the FD factors and their subsequent objectification by stable isotope dilution quantitation suggested that high concentrations of the esters ethyl 2-methylbutanoate, ethyl 2-methylpropanoate, and propyl 2-methylbutanoate cause the characteristic fruity, cantaloupe-like odor note in Huell Melon hops, whereas the fruity and minty odor notes in Polaris are associated with high amounts of 3-methylbutyl acetate and 1,8-cineole.


Assuntos
Aromatizantes/química , Humulus/química , Odorantes/análise , Compostos Orgânicos Voláteis/química , Aromatizantes/isolamento & purificação , Frutas/química , Cromatografia Gasosa-Espectrometria de Massas , Humulus/classificação , Estrutura Molecular , Compostos Orgânicos Voláteis/isolamento & purificação
8.
J Agric Food Chem ; 65(11): 2364-2372, 2017 Mar 22.
Artigo em Inglês | MEDLINE | ID: mdl-28245644

RESUMO

A stable isotope dilution assay was developed for quantitation of 4-methyl-4-sulfanylpentan-2-one (4MSP) in hops. The approach included the use of 4-(13C)methyl-4-sulfanyl(1,3,5-13C3)pentan-2-one as internal standard, selective isolation of hop thiols by mercurated agarose, and GC×GC-TOFMS analysis. Application of the method to 53 different hop samples revealed 4MSP concentrations between <1 and 114 µg/kg. Notably high concentrations were associated with United States varieties such as Citra, Eureka, Simcoe, and Apollo, whereas 4MSP was absent from traditional German and English varieties. Further experiments showed that besides the variety, also harvest year and storage vitally influenced 4MSP concentrations, whereas the impact of provenance was less pronounced. Hop processing such as drying and pelletizing had only a minor impact on 4MSP concentrations. Like the majority of other hop volatiles, 4MSP is predominantly located in the lupulin glands.


Assuntos
Cromatografia Gasosa-Espectrometria de Massas/métodos , Humulus/química , Técnicas de Diluição do Indicador , Pentanonas/química , Extratos Vegetais/química , Compostos de Sulfidrila/química , Humulus/classificação , Humulus/crescimento & desenvolvimento , Humulus/metabolismo , Pentanonas/metabolismo , Extratos Vegetais/metabolismo , Compostos de Sulfidrila/metabolismo
9.
BMC Res Notes ; 8: 542, 2015 Oct 06.
Artigo em Inglês | MEDLINE | ID: mdl-26438052

RESUMO

BACKGROUND: Hop is an economically important crop for the Pacific Northwest USA as well as other regions of the world. It is a perennial crop with rhizomatous or clonal propagation system for varietal distribution. A big concern for growers as well as brewers is variety purity and questions are regularly posed to public agencies concerning the availability of genotype testing. Current means for genotyping are based upon 25 microsatellites that provides relatively accurate genotyping but cannot always differentiate sister-lines. In addition, numerous PCR runs (25) are required to complete this process and only a few laboratories exist that perform this service. A genotyping protocol based upon SNPs would enable rapid accurate genotyping that can be assayed at any laboratory facility set up for SNP-based genotyping. The results of this study arose from a larger project designed for whole genome association studies upon the USDA-ARS hop germplasm collection consisting of approximately 116 distinct hop varieties and germplasm (female lines) from around the world. RESULTS: The original dataset that arose from partial sequencing of 121 genotypes resulted in the identification of 374,829 SNPs using TASSEL-UNEAK pipeline. After filtering out genotypes with more than 50% missing data (5 genotypes) and SNP markers with more than 20% missing data, 32,206 highly filtered SNP markers across 116 genotypes were identified and considered for this study. Minor allele frequency (MAF) was calculated for each SNP and ranked according to the most informative to least informative. Only those markers without missing data across genotypes as well as 60% or less heterozygous gamete calls were considered for further analysis. Genetic distances among individuals in the study were calculated using the marker with the highest MAF value, then by using a combination of the two markers with highest MAF values and so on. This process was reiterated until a set of markers was identified that allowed for all genotypes in the study to be genetically differentiated from each other. Next, we compared genetic matrices calculated from the minimal marker sets [(Table 2; 6-, 7-, 8-, 10- and 12-marker set matrices] and that of a matrix calculated from a set of markers with no missing data across all 116 samples (1006 SNP markers). The minimum number of markers required to meet both specifications was a set of 7-markers (Table 3). These seven SNPs were then aligned with a genome assembly, and DNA sequence both upstream and downstream were used to identify primer sequences that can be used to develop seven amplicons for high resolution melting curve PCR detection or other SNP-based PCR detection methods. CONCLUSIONS: This study identifies a set of 7 SNP markers that may prove useful for the identification and validation of hop varieties and accessions. Variety validation of unknown samples assumes that the variety under question has been included a priori in a discovery panel. These results are based upon in silica studies and markers need to be validated using different SNP marker technology upon a differential set of hop genotypes. The marker sequence data and suggested primer sets provide potential means to fingerprint hop varieties in most genetic laboratories utilizing SNP-marker technology.


Assuntos
Produtos Agrícolas/genética , Genoma de Planta , Técnicas de Genotipagem , Humulus/genética , Filogenia , Polimorfismo de Nucleotídeo Único , Alelos , Sequência de Bases , Mapeamento Cromossômico , Impressões Digitais de DNA , Frequência do Gene , Marcadores Genéticos , Genótipo , Heterozigoto , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Humulus/classificação , Repetições de Microssatélites , Dados de Sequência Molecular , Banco de Sementes , Análise de Sequência de DNA , Estados Unidos , United States Department of Agriculture
10.
J Agric Food Chem ; 63(11): 3022-30, 2015 Mar 25.
Artigo em Inglês | MEDLINE | ID: mdl-25780945

RESUMO

Free terpenoids and both free and bound polyfunctional thiols were investigated in five selected dual-purpose hop cultivars. Surprisingly, the dual-purpose Sorachi Ace variety was found to contain higher amounts of farnesene (2101 mg/kg) than aromatic hops such as Saaz but only traces of 3-methylbutylisobutyrate, a compound that usually distinguishes all bitter varieties. All five cultivars investigated here showed an exceptional citrus-like potential explained by either monoterpenic alcohols or polyfunctional thiols. Among the monoterpenic alcohols, ß-citronellol at concentrations above 7 mg/kg distinguished Amarillo, Citra, Hallertau Blanc, Mosaic, and Sorachi Ace from Nelson Sauvin and Tomahawk, two previously investigated dual-purpose hops, while linalool (312 mg/kg) and geraniol (211 mg/kg) remained good discriminating compounds for Nelson Sauvin and Tomahawk, respectively. Regarding polyfunctional thiols, higher amounts of 3-sulfanylhexyl acetate (27 µg/kg) characterized the Citra variety. Free 4-sulfanyl-4-methylpentan-2-one proved discriminant for Sorachi Ace, while the bound form is predominant in Nelson Sauvin. On the other hand, an S-conjugate of 3-sulfanylhexan-1-ol was found in Sorachi Ace at levels not far from those previously reported for Cascade, although the free form was undetected here. Both free and bound grapefruit-like 3-sulfanyl-4-methylpentan-1-ol (never evidenced before the present work) emerged as discriminating compounds for the Hallertau Blanc variety. The apotryptophanase assay also allowed us to evidence for the first time an S-conjugate of 2-sulfanylethan-1-ol.


Assuntos
Humulus/química , Extratos Vegetais/química , Compostos de Sulfidrila/química , Terpenos/química , Humulus/classificação , Estrutura Molecular , Extratos Vegetais/isolamento & purificação , Compostos de Sulfidrila/isolamento & purificação , Terpenos/isolamento & purificação
11.
J Sci Food Agric ; 94(6): 1248-52, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24105876

RESUMO

BACKGROUND: Hop cones contain several antimicrobial substances. The aim of the study was to determine the effects of two hop varieties, Aurora and Dana, on substrate (diet for a dairy cow, producing 30 kg milk daily) in vitro dry matter (DM) and crude protein (CP) degradability and digestibility. RESULTS: In the in vitro trial freshly ground hops were added to the buffered rumen fluid in concentrations simulating the cow's daily intake of 50, 100 and 200 g of hops. Increasing the concentration of hops decreased (P < 0.05) both the average in vitro DM degradabilities of substrate from 725 to 592, 553 and 481 g kg(-1), respectively, and in vitro CP degradabilities of substrate from 752 to 566, 561 and 478 g kg(-1), respectively. The reduction of in vitro DM and CP degradability is counterbalanced by the (invariable) in vitro DM and CP digestibility. The difference between CP digestibility and degradability represents an estimate of the amount of rumen 'bypass' protein which increased with increasing concentration of hops from 172 to 454 g kg(-1). CONCLUSIONS: Decreased DM and CP degradability and increased amount of rumen 'bypass' protein could lower the amounts of protein required by high-producing ruminant animals. However, this supposition needs a validation with in vivo trials.


Assuntos
Ração Animal , Dieta , Fibras na Dieta/metabolismo , Proteínas Alimentares/metabolismo , Humulus/química , Preparações de Plantas/farmacologia , Rúmen/efeitos dos fármacos , Fenômenos Fisiológicos da Nutrição Animal , Animais , Bovinos , Suplementos Nutricionais , Digestão , Feminino , Flores , Humulus/classificação , Necessidades Nutricionais , Proteínas de Plantas/metabolismo , Proteólise/efeitos dos fármacos , Rúmen/metabolismo , Especificidade da Espécie
12.
J Sci Food Agric ; 93(10): 2568-74, 2013 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-23483584

RESUMO

BACKGROUND: Hop cones, the immature inflorescences of the female plant of Humulus lupulus L., have been used for centuries to improve the flavor of beer and can be also used for a great variety of other products. Four samples of hop, belonging to three different cultivars (Nugget, Saaz and Perle), were studied in the present work. Headspace solid-phase microextraction and hydrodistillation techniques were used to obtain the volatile profiles of the samples. RESULTS: Independent of the technique employed, over 40 volatile compounds were detected in the hop pellet samples (esters, monoterpenes, monoterpenoids, sesquiterpenes and sesquiterpenoids). Sesquiterpenes and sesquiterpenoids represented the majority of the total aromatic compounds. The main compounds for all cultivars were myrcene, ß-caryophyllene and humulene, but the presence of high amounts of ß-farnesene in Saaz cultivar was highlighted. CONCLUSION: Both techniques were suitable for studying qualitatively the volatile composition of hop pellets, but some differences were shown when studying the proportion of the main constituents of the volatile profiles. Understanding these differences may help researchers design future studies to advise the industry how to exploit the potential of each hop cultivar.


Assuntos
Destilação/métodos , Humulus/química , Inflorescência/química , Óleos Voláteis/química , Sesquiterpenos/análise , Microextração em Fase Sólida/métodos , Monoterpenos Acíclicos , Alcenos/análise , Cerveja , Humulus/classificação , Sesquiterpenos Monocíclicos , Monoterpenos/análise , Sesquiterpenos Policíclicos , Especificidade da Espécie
13.
J Sci Food Agric ; 93(1): 45-52, 2013 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-22692875

RESUMO

BACKGROUND: There is a growing interest in the use of hops (Humulus lupulus) as an alternative to antibiotics to manipulate ruminal fermentation. However, the effects of different hop varieties on ruminal fermentation and bacterial populations have not been studied. Here the effects of three hop varieties, Cascade (CAS), Millennium (MIL) and Teamaker (TM), at a level of 800 µg mL(-1) inoculum on ruminal fermentation and microbial populations in an artificial rumen system (rusitec) fed a barley silage-based total mixed ration were investigated. Bacterial populations were assessed using real-time polymerase chain reaction and expressed as a percentage of total bacterial 16S rRNA gene copies. RESULTS: All hops reduced (P < 0.001) total gas, methane and the acetate:propionate ratio. Liquid-associated Fibrobacter succinogenes, Ruminococcus albus and Streptococcus bovis were reduced (P < 0.05) by MIL and TM. Feed particle-associated S. bovis was reduced (P < 0.01) by MIL and TM, but TM and CAS increased (P < 0.01) Ruminobacter amylophilus and Prevotella bryantii respectively. Methanogens were decreased (P < 0.05) by MIL in both liquid and solid fractions and by CAS in the solid fraction. The total amount of α- and ß-acids in hops affected the ruminal fermentation. CONCLUSION: Hop-induced changes in fermentation and microbial populations may improve energy efficiency use in the rumen. Further research is needed to determine the effects of hops on in vivo ruminal fermentation, microbial populations and animal performance.


Assuntos
Bactérias/efeitos dos fármacos , Humulus/química , Extratos Vegetais/farmacologia , Rúmen/efeitos dos fármacos , Ácido Acético/metabolismo , Animais , Bactérias/genética , Bactérias/crescimento & desenvolvimento , Dieta , Fermentação/efeitos dos fármacos , Gases/metabolismo , Hordeum , Humulus/classificação , Metano/metabolismo , Propionatos/metabolismo , RNA Ribossômico 16S , Rúmen/metabolismo , Rúmen/microbiologia , Silagem , Especificidade da Espécie
14.
Syst Biol ; 60(1): 45-59, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21088008

RESUMO

There is an emerging consensus that the intent of most species concepts is to identify evolutionarily distinct lineages. However, the criteria used to identify lineages differ among concepts depending on the perceived importance of various attributes of evolving populations. We have examined five different species criteria to ask whether the three taxonomic varieties of Humulus lupulus (hops) native to North America are distinct lineages. Three criteria (monophyly, absence of genetic intermediates, and diagnosability) focus on evolutionary patterns and two (intrinsic reproductive isolation and niche specialization) consider evolutionary processes. Phylogenetic analysis of amplified fragment length polymorphism (AFLP) data under a relaxed molecular clock, a stochastic Dollo substitution model, and parsimony identified all varieties as monophyletic, thus they satisfy the monophyly criterion for species delimitation. Principal coordinate analysis and a Bayesian assignment procedure revealed deep genetic subdivisions and little admixture between varieties, indicating an absence of genetic intermediates and compliance with the genotypic cluster species criterion. Diagnostic morphological and AFLP characters were found for all varieties, thus they meet the diagnosability criterion. Natural history information suggests that reproductive isolating barriers may have evolved in var. pubescens, potentially qualifying it as a species under a criterion of intrinsic reproductive isolation. Environmental niche modeling showed that the preferred habitat of var. neomexicanus is climatically unique, suggesting niche specialization and thus compliance with an ecological species criterion. Isolation by distance coupled with imperfect sampling can lead to erroneous lineage identification using some species criteria. Compliance with complementary pattern- and process-oriented criteria provides powerful corroboration for a species hypothesis and mitigates the necessity for comprehensive sampling of the entire species range, a practical impossibility in many systems. We hypothesize that var. pubescens maintains its genetic identity, despite substantial niche overlap with var. lupuloides, via the evolution of partial reproductive isolating mechanisms. Variety neomexicanus, conversely, will likely persist as a distinct lineage, regardless of limited gene flow with vars. lupuloides and pubescens because of ecological isolation--adaptation to the unique conditions of the Rocky Mountain cordillera. Thus, we support recognition of vars. neomexicanus and pubescens as species, but delay making a recommendation for var. lupuloides until sampling of genetic variation is complete or a stable biological process can be identified to explain its observed genetic divergence.


Assuntos
Análise do Polimorfismo de Comprimento de Fragmentos Amplificados/métodos , Humulus/classificação , DNA de Plantas/genética , Ecossistema , Evolução Molecular , Fluxo Gênico , Especiação Genética , Variação Genética , Genética Populacional , Humulus/genética , Humulus/fisiologia , Modelos Genéticos , América do Norte , Filogenia
15.
Genome ; 53(7): 545-57, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20616876

RESUMO

Wild hops (Humulus lupulus L.) are potential new germplasms to expand the variability of genetic resources for hop breeding. We evaluated Canadian (62 plants) and Caucasian (58 plants) wild hops by their chemical characteristics and with molecular genetic analyses using sequence-tagged site and simple sequence repeat markers, in comparison with European (104 plants) and North American (27 plants) wild hops. The contents of alpha and beta acids varied from 0.36% to 5.11% and from 0.43% to 6.66% in Canadian wild hops, and from 0.85% to 3.65% and from 1.22% to 4.81% in Caucasian wild hops, respectively. The contents of cohumulone and colupulone distinctly differed between European and North American wild hops: the cohumulone level in alpha acids was in the range 46.1%-68.4% among North American wild hops and in the range 13.6%-30.6% among European wild hops. The high content of myrcene and the low contents of humulene, farnesene, and selinenes were typical for wild hops from Canada, in contrast to wild hops from the Caucasus region. We compared the chemical characteristics with molecular genetic data. Chemical characteristics differentiated wild hops into North American and Eurasian groups. Molecular genetic analysis was able to separate Caucasian wild hops from European wild hops. We proved a hop phylogeny by means of wide molecular analysis.


Assuntos
Cicloexanonas/metabolismo , Humulus/genética , Repetições Minissatélites/genética , Polimorfismo Genético/genética , Sitios de Sequências Rotuladas , Canadá , Sistema Enzimático do Citocromo P-450/metabolismo , Humulus/classificação , Humulus/metabolismo , Filogenia , Federação Russa
16.
Genome ; 50(1): 15-25, 2007 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17546067

RESUMO

Molecular markers have been increasingly used in genetic studies of crop species for their applicability in breeding programs. In this work, we report on the development of new sequence-tagged site (STS) markers based on sequence information from several identified hop (Humulus lupulus L.) genes. We demonstrate the usefulness of these STS markers and compare them to SSRs for identifying hop genotypes and estimating genetic diversity in a collection of 68 hop cultivars from around the world. We found 3 individual gene variants (A, B, C) of the chs_H1 gene in this collection. The most frequent gene variant, B (AJ304877), was not detected in Mt. Hood, Glacier, and Horizon (US) cultivars. Gene variant A came from an American germplasm through wild hops. We found length polymorphism in intron 1 of the chs2 gene, and 4 different amplified markers were detected in PCRs. The chs3 gene was found in only one third of the cultivars. None of the variants of the studied CHS genes were found in Humulus japonicus. We detected 5 major gene variants of DNA-binding protein in the collection of H. lupulus cultivars and 2 others in H. japonicus. We also found 3 individual gene variants of an endochitinase gene. The distribution of gene variants did not correlate with any resistance. We proved that developed STS markers can be successfully used for the analysis of genetic diversity and can substitute and supplement SSR markers in hop.


Assuntos
DNA de Plantas/genética , Variação Genética , Humulus/classificação , Humulus/genética , Sequência de Bases , Cruzamentos Genéticos , Impressões Digitais de DNA , Primers do DNA , Genoma de Planta , Dados de Sequência Molecular , Filogenia , Alinhamento de Sequência , Homologia de Sequência do Ácido Nucleico , Sitios de Sequências Rotuladas
17.
Heredity (Edinb) ; 97(1): 66-74, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16685279

RESUMO

We have analysed wild hops collected widely from the Northern Hemisphere, assessing the genetic diversity and the geographical distribution of haplotypes, to investigate the evolution and phylogeny of hops, Humulus lupulus. The haplotypes were characterized by the nuclear ribosomal DNA spacer region (length and DNA sequence) and chloroplast DNA noncoding regions (DNA sequences). The results indicated that primary divergence into European (including Caucasus and Altai hops), and Asian-North American types, was 1.05+/-0.28 to 1.27+/-0.30 million years ago. Although an Eastern boundary for European nuclear haplotype distribution was unclear due to the ambiguous origin of Northern Chinese samples, the European hop group showed a wide geographical distribution across Eurasia from the Altai region to Portugal. The low genetic variation in this group suggested rapid and recent expansion. The North American hop group showed high diversity, and is considered to include hops that have migrated from Asia. Japanese and Chinese hops were identified as genetically distinct. This study has shown that wild hops in each growing region are genetically differentiated with considerable genetic diversity. It gives insights into the evolution and domestication of hops that are discussed.


Assuntos
Humulus/genética , Filogenia , DNA de Cloroplastos/genética , DNA de Plantas/genética , DNA Espaçador Ribossômico , Evolução Molecular , Etiquetas de Sequências Expressas , Especiação Genética , Variação Genética , Geografia , Humulus/classificação
18.
Genome ; 44(5): 773-82, 2001 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-11681600

RESUMO

Microsatellites have many desirable marker properties and have been increasingly used in crop plants in genetic diversity studies. Here we report on the characterisation of microsatellite markers and on their use for the determination of genetic identities and the assessment of genetic variability among accessions from a germplasm collection of hop. Thirty-two polymorphic alleles were found in the 55 diploid genotypes, with an average number of eight alleles (3.4 effective alleles) for four microsatellite loci. Calculated polymorphic information content values classified three loci as informative markers and two loci as suitable for mapping. The average observed heterozygosity was 0.7 and the common probability of identical genotypes was 3.271 x 10(-4). An additional locus, amplified by one primer pair, was confirmed by segregation analysis of two crosses. The locus discovered was heterozygous, with a null allele in the segregating population. The same range of alleles was detected in nine triploid and five tetraploid hop genotypes. Cultivar heterozygosity varied among all 69 accessions, with only one cultivar being homozygous at four loci. Microsatellite allele polymorphisms distinguished 81% of all genotypes; the same allelic profile was found mainly in clonally selected cultivars. Cultivar-specific alleles were found in some genotypes, as well as a specific distribution of alleles in geographically distinct hop germplasms. The genetic relationship among 41 hop accessions was compared on the basis of microsatellite and AFLP polymorphisms. Genetic similarity dendrograms showed low correlation between the two marker systems. The microsatellite dendrogram grouped genetically related accessions reasonably well, while the AFLP dendrogram showed good clustering of closely related accessions and, additionally, separated two geographically distinct hop germplasms. The results of microsatellite and AFLP analysis are discussed from the point of view of the applicability of the two marker systems for different aspects of germplasm evaluation.


Assuntos
Variação Genética , Humulus/genética , Repetições de Microssatélites , Alelos , Primers do DNA , Genótipo , Humulus/classificação , Polimorfismo Genético , Poliploidia
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