Citizen science data opens multiple avenues for iridovirus research and prompts first detection of Invertebrate iridescent virus 31 in Australia.

From citizen science data we report the first records of blue to violet-colored oniscideans (Oniscidea: Isopoda), indicating potential invertebrate iridescent virus (IIV; Betairidovirinae: Iridoviridae) infection: in Africa, South America, and Oceania; and of the new hosts Armadillidium nasatum and Balloniscus sellowii. DNA sequencing of indigo Porcellio scaber confirms the presence of Invertebrate iridescent virus 31 in Australia. Beyond the Oniscidea, new, putative IIV hosts are identified: hoverfly pupae (Eristalinae), a tortrix moth larva (Phaecasiophora niveiguttana), and a millipede (Harpaphe haydeniana). In addition, the purported positive correlation between virion diameter and wavelength of iridescence is analyzed qualitatively for the first time.

A novel positive single-stranded RNA virus from the crustacean parasite, Probopyrinella latreuticola (Peracarida: Isopoda: Bopyridae).

A positive, single-stranded RNA virus is identified from the transcriptome of Probopyrinella latreuticola Gissler, 1882; a bopyrid isopod parasite of the Sargassum shrimp, Latreutes fucorum Fabricius, 1789. The viral sequence is 13,098 bp in length (including polyA), encoding four open reading frames (ORF). ORF-1 encodes a polyprotein, with three computationally discernible functional domains: viral methyltransferase; viral helicase; and RNA-directed RNA polymerase. The remaining ORFs encode a transmembrane protein, a capsid protein and a protein of undetermined function. The raw transcriptomic data reveal a low level of background single nucleotide mutations within the data. Comparison of the protein sequence data and synteny with other viral isolates reveals that the greatest protein similarity (<39%) is shared with the Negevirus group, a group that exclusively infects insects. Phylogenetic assessment of the individual polyprotein domains revealed a mixed prediction of phylogenetic origins, suggesting with low confidence that the novel +ssRNA virus could be present in multiple places throughout the individual gene trees. A concatenated approach strongly suggested that this new virus is an early diverging isolate, branching before the Negevirus and Cilevirus groups. Alongside the new isolate are other marine viruses, also present toward the base of the tree. The isopod virosphere, with the addition of this novel virus, is discussed relative to viral genomics/systematics. A great diversity of nege-like viruses appears to be present in marine invertebrate hosts, which require greater efforts for discovery and identification.

Distribution and Inferred Evolutionary Characteristics of a Chimeric ssDNA Virus Associated with Intertidal Marine Isopods.

Aquatic invertebrates are common reservoirs of a rapidly expanding group of circular Rep-encoding ssDNA (CRESS-DNA) viruses. This study identified and explored the phylogenetic relationship between novel CRESS-DNA viral genotypes associated with Pacific intertidal isopods Idotea wosnesenskii, Idotea resecata, and Gnorimosphaeroma oregonensis. One genotype associated with I. wosnesenskii, IWaV278, shared sequence similarity and genomic features with Tombusviridae (ssRNA) and Circoviridae (ssDNA) genomes and was putatively assigned to the Cruciviridae clade comprising chimeric viruses. The complete genome of IWaV278 (3478 nt) was computationally completed, validated via Sanger sequencing, and exhibited sequence conservation and codon usage patterns analogous to other members of the Cruciviridae. Viral surveillance (qPCR) indicated that this virus was temporally transient (present in 2015, but not 2017), specific to I. wosnesenskii at a single collection site (Washington, DC, USA), more prevalent among male specimens, and frequently detected within exoskeletal structures. 18S rRNA sequences identified two alveolate protists associated with IWaV278-positive tissues and mechanical epibiont removal of ciliated exoskeletal structures eliminated viral detection, suggesting that the putative host of IWaV278 may be an epibiont of I. wosnesenskii. This investigation provides additional phylogenetic evidence to resolve Cruciviridae evolution and offers insight into the biogeography, specificity, and potential host of a crucivirus genotype.

Genome sequence of a crustacean iridovirus, IIV31, isolated from the pill bug, Armadillidium vulgare.

Members of the family Iridoviridae are animal viruses that infect only invertebrates and poikilothermic vertebrates. The invertebrate iridovirus 31 (IIV31) was originally isolated from adult pill bugs, Armadillidium vulgare (class Crustacea, order Isopoda, suborder Oniscidea), found in southern California on the campus of the University of California, Riverside, USA. IIV31 virions are icosahedral, have a diameter of about 135 nm, and contain a dsDNA genome 220.222 kbp in length, with 35.09 mol % G+C content and 203 ORFs. Here, we describe the complete genome sequence of this virus and its annotation. This is the eighth genome sequence of an IIV reported.

Iridovirus infection in terrestrial isopods from Sicily (Italy).

During our researches on systematics and ecology of terrestrial isopods, carried out in western Sicily, some specimens showing a blue-purple coloration were collected; they belonged to four species: Armadillidium decorum Brandt, 1833, Trichoniscus panormidensis Montesanto et al., 2011, Philoscia affinis Verhoeff, 1908, Porcellio siculoccidentalis Viglianisi et al., 1992. We hypothesized that such coloration could be due, as reported in literature, to characteristic paracrystalline arrays of virions inside the tissues of blue colored specimens. Ultrastructural observations by transmission electron microscopy, on tissues of A. decorum, showed the presence of electron-dense viral particles, with a diameter of nearly 0.12µm. Dual-axis tomography, performed on specimens of A. decorum, evidenced an icosahedral structure of viral particles matching with that of Isopod Iridescent Virus (IIV). Molecular analysis, on 254bp portion of the major capsid protein (MCP) gene, allowed to place the virus into IIV-31 group, already known for other oniscidean species. The symptoms of infected individuals and the course of the disease were followed in laboratory, indicating similarities with other studies on Isopod Iridoviruses. Moreover, some notes on reproduction of infected ovigerous females are reported. Our data support unequivocal and direct evidences for the first case of IIV infection in terrestrial isopods reported in Italy.

Bacteriophage WO in Wolbachia infecting terrestrial isopods.

Wolbachia are maternally inherited intracellular alpha-proteobacteria that infect a wide range of arthropods. They are associated with a number of different reproductive phenotypes in arthropods and nematodes. In isopod crustacean, Wolbachia are responsible for feminization of genetic males in many species, and for cytoplasmic incompatibility in two species. In this paper, we report the first detection of phage WO from Wolbachia infecting terrestrial isopods. All Wolbachia strains tested in this study were infected with phage WO. Based on the orf7 phage sequence, we identified three different phage sequences in four Wolbachia strains. The phage of Wolbachia infecting Armadillidium vulgare seems to be not active, unlike other phages WO previously described in arthropods.