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1.
J Chromatogr A ; 1718: 464697, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38341901

RESUMO

Quantification of proteins is still predominantly done by the traditional bottom-up approach. Targeting of intact proteins in complex biological matrices is connected with multiple challenges during the sample pretreatment, separation, and detection step of the analytical workflow. In this work, we focused on the development of an on-line hyphenated capillary zone electrophoresis-mass spectrometry method employing off-line microscale solid-phase extraction based on hydrophilic lipophilic balance (HLB) sorbent as a sample pretreatment step for the analysis of low molecular mass intact proteins (<20 kDa) spiked in various biological fluids (human serum, plasma, urine, and saliva). A detailed optimization process involved the selection of a suitable capillary surface, background electrolyte (BGE), and comparison of two in-capillary preconcentration methods, namely transient isotachophoresis (tITP) and dynamic pH junction (DPJ), to enhance the sensitivity of the method. Optimum separation of the analytes was achieved using uncoated bare fused silica capillary employing 500 mM formic acid (pH 1.96) + 5 % (v/v) acetonitrile as BGE. tITP was utilized as an optimum preconcentration technique, achieving a 19- to 127-fold increase in the signal intensity when using 200 mM ammonium formate (adjusted to pH 4.00) as the leading electrolyte and BGE as the terminating electrolyte. Off-line microscale solid-phase extraction with various eluate treatment procedures was evaluated to ensure the compatibility of the sample pretreatment method with the selected in-capillary preconcentration, separation, and detection process. Achieved extraction recoveries of spiked proteins were in the range of 76-100 % for urine, 12-54 % for serum, 21-106 % for plasma, and 25-98 % for saliva when the eluate was evaporated and reconstituted in the solution of the leading electrolyte to achieve the tITP process. The optimum method was validated across different biological matrices, offering good linearity, accuracy, and precision, and making it suitable for proteomic studies (e.g., therapeutic drug monitoring, biomarker research) in different biological samples.


Assuntos
Isotacoforese , Humanos , Isotacoforese/métodos , Proteômica , Eletroforese Capilar/métodos , Espectrometria de Massas , Eletrólitos , Extração em Fase Sólida
2.
Electrophoresis ; 45(5-6): 537-547, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-37946590

RESUMO

A great need currently exists for rapid, inexpensive, and accurate methods for microbial analysis in the medical, food, industrial, and water quality fields. Here, a novel capillary isotachophoresis (CITP) method is presented for the focusing, sorting, and quantitation of intact cells in mixed samples based on their electrophoretic mobility ranges. Using a series of ion spacers dissolved in the sample, this technique results in several efficient cell peaks in the electropherogram corresponding to specific cell electrophoretic mobility ranges. The concentrations of different species in mixed-cell samples are determined from the cell peak areas and the known peak response factors for the cell species using a series of linear equations. Method design and optimization are discussed, including the choice of running buffer, pH, and ion spacers. Mixed-cell samples of up to four different species were focused and quantified as a proof-of-principle of the method. When sample cell concentrations were toward the middle of the linear response range, accuracies between 1% and 11% and relative standard deviations of 1%-14% were obtained, depending on the number of cell species in the mixture. This work provides a useful basis for future studies of cell quantitation using CITP, which could be potentially applied to a variety of fields including cell growth studies, microbial contamination testing, and sterility testing.


Assuntos
Isotacoforese , Isotacoforese/métodos , Eletroforese Capilar/métodos
3.
Anal Chem ; 95(51): 18783-18792, 2023 12 26.
Artigo em Inglês | MEDLINE | ID: mdl-38088564

RESUMO

DNA origami nanostructures are engineered nanomaterials (ENMs) that possess significant customizability, biocompatibility, and tunable structural and functional properties, making them potentially useful materials in fields, such as medicine, biocomputing, biomedical engineering, and measurement science. Despite the potential of DNA origami as a functional nanomaterial, a major barrier to its applicability is the difficulty associated with obtaining pure, well-folded structures. Therefore, rapid methods of analysis to ensure purity are needed to support the rapid development of this class of nanomaterials. Here, we present the development of capillary electrophoresis (CE) as an analytical tool for DNA origami. CE was investigated under both capillary zone electrophoresis (CZE) and capillary transient isotachophoresis (ctITP) modes. Optimization of both systems yielded baseline resolved separations of folded DNA origami nanostructures from excess staple strands. The ctITP separation mode demonstrated superior performance in terms of peak resolution (Rs = 2.05 ± 0.3), peak efficiency (N = 12,200 ± 230), and peak symmetry (As = 1.29 ± 0.032). The SYBR family dyes (Gold, Green I, and Green II) were investigated as highly efficient, noncovalent fluorophores for on-column labeling of DNA origami and detection using laser-induced fluorescence. Finally, ctITP analysis conditions were also applied to DNA origami nanostructures with different shapes and for the differentiation of DNA origami aggregates.


Assuntos
Isotacoforese , Nanoestruturas , Nanoestruturas/química , DNA/química , Ouro , Eletroforese Capilar/métodos , Isotacoforese/métodos , Conformação de Ácido Nucleico , Nanotecnologia
4.
J Chromatogr A ; 1704: 464117, 2023 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-37300912

RESUMO

Paper and thread are widely used as the substrates for fabricating low-cost, disposable, and portable microfluidic analytical devices used in clinical, environmental, and food safety monitoring. Concerning separation methods including chromatography and electrophoresis, these substrates provide unique platforms for developing portable devices. This review focuses on summarizing recent research on the miniaturization of the separation techniques using paper and thread. Preconcentration, purification, desalination, and separation of various analytes are achievable using electrophoresis and chromatography methods integrated with modified or unmodified paper/thread wicking channels. A variety of 2D and 3D designs of paper/thread platforms for zone electrophoresis, capillary electrophoresis, and modified/unmodified chromatography are discussed with emphasis on their limitation and improvements. The current progress in the signal amplification strategies such as isoelectric focusing, isotachophoresis, ion concentration polarization, isoelectric focusing, and stacking methods in paper-based devices are reviewed. Different strategies for chromatographic separations based on paper/thread will be explained. The separation of target species from complex samples and their determination by integration with other analytical methods like spectroscopy and electrochemistry are well-listed. Furthermore, the innovations for plasma and cell separation from blood as an important human biofluid are presented, and the related paper/thread modification methods are explored.


Assuntos
Isotacoforese , Técnicas Analíticas Microfluídicas , Humanos , Microfluídica , Eletroforese Capilar/métodos , Focalização Isoelétrica/métodos , Isotacoforese/métodos , Cromatografia
5.
Nature ; 618(7967): 1057-1064, 2023 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-37344592

RESUMO

Translation regulation is critical for early mammalian embryonic development1. However, previous studies had been restricted to bulk measurements2, precluding precise determination of translation regulation including allele-specific analyses. Here, to address this challenge, we developed a novel microfluidic isotachophoresis (ITP) approach, named RIBOsome profiling via ITP (Ribo-ITP), and characterized translation in single oocytes and embryos during early mouse development. We identified differential translation efficiency as a key mechanism regulating genes involved in centrosome organization and N6-methyladenosine modification of RNAs. Our high-coverage measurements enabled, to our knowledge, the first analysis of allele-specific ribosome engagement in early development. These led to the discovery of stage-specific differential engagement of zygotic RNAs with ribosomes and reduced translation efficiency of transcripts exhibiting allele-biased expression. By integrating our measurements with proteomics data, we discovered that ribosome occupancy in germinal vesicle-stage oocytes is the predominant determinant of protein abundance in the zygote. The Ribo-ITP approach will enable numerous applications by providing high-coverage and high-resolution ribosome occupancy measurements from ultra-low input samples including single cells.


Assuntos
Desenvolvimento Embrionário , Isotacoforese , Técnicas Analíticas Microfluídicas , Biossíntese de Proteínas , Perfil de Ribossomos , Ribossomos , Análise de Célula Única , Animais , Camundongos , Proteômica , Ribossomos/metabolismo , RNA Mensageiro/genética , Análise de Célula Única/métodos , Alelos , Técnicas Analíticas Microfluídicas/métodos , Oócitos/crescimento & desenvolvimento , Oócitos/metabolismo , Isotacoforese/métodos , Perfil de Ribossomos/métodos , Centrossomo , Zigoto/crescimento & desenvolvimento , Zigoto/metabolismo
6.
Molecules ; 28(3)2023 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-36770757

RESUMO

One of the current challenges facing researchers is the search for alternative biological material, as opposed to routinely and invasively collected (such as blood), as the analysis of the former would provide information about the state of human health, allowing for the diagnosis of diseases in their early stages. With the search for disease biomarkers in alternative materials, the development of newer analytical solutions has been observed. This study aims to develop a reliable analytical method using the capillary isotachophoresis technique for the determination of organic acids in children's saliva, the presence/elevation of which can be used in the future for diagnostic purposes. Organic acids such as formic, lactic, acetic, propionic, and butyric acid, were determined in the saliva of healthy children without carious lesions. The limit of quantification determined in the validation process was found to vary from 0.05 to 1.56 mg/L, the recoveries at the two levels were determined to vary between 90% and 110% for level I, while for level II the corresponding values of 75% and 106% were found; the presentation, expressed as relative standard deviation values (RSD), did not exceed 5%. The parameters determined while validating the results method indicated that the obtained are reliable. The Red-Green-Blue (RGB) additive color model was used for the evaluation of the method. This comparative analysis allowed us to define the color of the method, which expresses whether it meets the given assumptions and requirements. According to the RGB model, the isotachophoresis method developed requires less reagent input, shorter sample preparation times, and results with lower energy consumption. Thus, the subject procedure may provide an alternative, routine tool for determining organic acids in human saliva, to be applied in the diagnosing of diseases of various etiological origins.


Assuntos
Isotacoforese , Criança , Humanos , Isotacoforese/métodos , Eletroforese Capilar/métodos , Saliva , Ácidos , Compostos Orgânicos
7.
Talanta ; 255: 124198, 2023 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-36580810

RESUMO

The ability to preconcentrate, separate, and purify biomolecules, such as proteins and nucleic acids, is an important requirement for the next generation of portable diagnostic tools for environmental monitoring and disease detection. Traditionally, such pretreatment has been accomplished using large, centralized liquid- or solid-phase extraction equipment, which can be time-consuming and requires many processing steps. Here, we present a newly developed electrokinetic concentration technique, teíchophoresis (TPE), to concentrate and separate proteins, and to concentrate nucleic acids. In TPE, a free-flowing sample is exposed to a perpendicular electric field in the vicinity of a mass-impermeable conductive wall and a conductive terminating electrolyte (TE), which creates a high electric field strength zone between the lower mobility sample and the no-flux barrier. Unlike a similar electrokinetic concentration method, isotachophoresis (ITP), TPE does not require a leading electrolyte (LE), yet still enables a continuous field-driven electrophoretic ion migration across the channel and a free-flowing biomolecular concentration at the conductive wall. Here, we demonstrate the use of free-flow TPE (FFTPE) to manipulate biomolecular samples containing proteins or nucleic acids. We first use TPE to drive a 6.6-fold concentration increase of avidin-FITC, and also demonstrate protein separation and stacking between ovalbumin-fluorescein and BSA-AlexaFluor 555, both without the use of a conventional LE. Further, we utilize TPE to perform a 21-fold concentration increase of nucleic acids. Our results show that TPE is biocompatible with both proteins and nucleic acids, requires only 10 V DC, produces no significant sample pH changes during operation, and demonstrates that this method can be used as an effective sample pretreatment to prepare biological samples for downstream analysis in a continuous free-flowing microfluidic channel.


Assuntos
Isotacoforese , Ácidos Nucleicos , Ácidos Nucleicos/análise , Proteínas/química , Isotacoforese/métodos , Eletrólitos , Microfluídica
8.
Anal Bioanal Chem ; 415(18): 4163-4172, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-36151350

RESUMO

Polyacrylamide gel electrophoresis (PAGE) is a ubiquitous technique used in biochemical research laboratories to characterize protein samples. Despite its popularity, PAGE is relatively slow and provides limited separation resolution, especially for native proteins. This report describes the development of a microfluidic thermal gel transient isotachophoresis (TG-tITP) method to rapidly separate native proteins with high resolution. Thermal gels were employed as a separations matrix because of their unique ability to change viscosity in response to temperature. Proteins were added into thermal gel and loaded into a microfluidic device. Electrolyte optimization was conducted to achieve robust tITP to isotachophoretically preconcentrate proteins and then electrophoretically separate them. Electropherograms were collected through both time and distance to enable both small and large proteins to be measured within a single analysis. The effects of temperature were evaluated and found to exhibit a pronounced effect on the separation. Temperature gradients were then employed to alter thermal gel viscosity over time to maximize separation resolution between proteins. The results herein demonstrate how gradient TG-tITP achieves rapid, high-performance separations of native proteins. This analysis provided a wide mass range (6-464 kDa) with two-fold higher resolution than native PAGE while requiring 15,000-fold less protein loading and providing five-fold faster analysis times.


Assuntos
Isotacoforese , Isotacoforese/métodos , Temperatura , Proteínas/química , Eletroforese em Gel de Poliacrilamida , Eletroforese em Gel de Poliacrilamida Nativa
9.
J Chromatogr A ; 1685: 463591, 2022 Dec 06.
Artigo em Inglês | MEDLINE | ID: mdl-36323110

RESUMO

With increasing demands on protein analyses in complex biological matrices, the insistence on developing new sample preparation techniques is rising. Recently, we introduced a new displacement electrophoresis technique (epitachophoresis) and instrumentation for preparative concentration and cleaning of DNA samples. This work describes the possibility of applying this device to protein samples. We have developed a method for the epitachophoretic concentration of proteins in a cationic mode and tested it by concentrating and collecting the protein zones from complex biological matrices (urine and growth medium). Under optimized conditions, we have obtained recoveries up to 99%. Furthermore, the applicability of the developed method was proven by concentrating and collecting the cytochrome c zone from a HeLa cell line growth medium, where the protein cytochrome c was released during cell apoptosis.


Assuntos
Líquidos Corporais , Isotacoforese , Humanos , Citocromos c , Células HeLa , Isotacoforese/métodos , Proteínas
10.
Anal Chem ; 94(39): 13481-13488, 2022 10 04.
Artigo em Inglês | MEDLINE | ID: mdl-36121349

RESUMO

We present an experimental study of a novel continuous electrokinetic molecular concentration and separation technique termed teíchophoresis (TPE). We demonstrate here that TPE can serve as a potential alternative to the electrokinetic method isotachophoresis (ITP). In ITP, an electric field serves to focus charged species between a low-mobility terminating electrolyte (TE) and a high-mobility leading electrolyte (LE). Similarly, TPE serves to focus charged species between a low-mobility TE; however, the LE is conveniently replaced with a no-flux boundary generated by a conductive wall. The electric field can still penetrate this no-flux region due to the wall's finite conductivity, but ion migration is impeded due to the physicality of the wall. We perform detailed concentration and separation experiments across varying electric potentials, flow rates, and TE concentrations. We also show that TPE can achieve a 60,000-fold concentration factor continuously without an LE, using only 10 V DC. In comparison with conventional batch-driven ITP, continuous free-flow wall TPE (FFTPE) has the potential to serve as a simplified alternative method. FFTPE offers a high concentration power at a fraction of the required voltage, does not require an LE, and has the increased throughput potential of a continuous process.


Assuntos
Isotacoforese , Eletrólitos , Isotacoforese/métodos
11.
J Sep Sci ; 45(20): 3887-3899, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-35998068

RESUMO

Capillary electrophoresis-mass spectrometry often lacks sufficient limits of detection for trace substances in the environment due to its low loadability. To overcome this problem, we conducted a feasibility study for column-coupling isotachophoresis to capillary electrophoresis-mass spectrometry. The first dimension isotachophoresis preconcentrated the analytes. The column-coupling of both dimensions was achieved by a hybrid capillary microfluidic chip setup. Reliable analyte transfer by voltage switching was enabled by an in-chip capacitively coupled contactless conductivity detector placed around the channel of the common section between two T-shaped crossings in the chip connecting both dimensions. This eliminated the need to calculate the moment of analyte transfer. A commercial capillary electrophoresis-mass spectrometry instrument with easily installable adaptations operated the setup. Prior to coupling isotachophoresis with capillary zone electrophoresis-mass spectrometry, both dimensions were optimized individually by simulations and verified experimentally. Both dimensions were able to stack/separate all degradation products of glyphosate, the most important herbicide applied worldwide. The first dimension isotachophoresis also removed phosphate, which is a critical matrix component in many environmental samples. Enrichment and separation of glyphosate and its main degradation product aminomethylphosphonic acid by the two-dimensional setup provided an excellent limit of detection of 150 pM (25 ng/L) for glyphosate.


Assuntos
Isotacoforese , Isotacoforese/métodos , Limite de Detecção , Eletroforese Capilar/métodos , Espectrometria de Massas , Glifosato
12.
J Chromatogr A ; 1677: 463337, 2022 Aug 16.
Artigo em Inglês | MEDLINE | ID: mdl-35868155

RESUMO

This review brings a survey of papers on analytical capillary and microchip isotachophoresis published since 2018 until the first quarter of 2022. Theoretical papers extending fundamental knowledge include those on computer simulations that remain an important research tool useful in the design of electrolyte systems. Many papers are focused on instrumental aspects where new media including microfluidic devices and their hyphenation to various detection techniques bring remarkable results. Papers reporting analytical applications demonstrate the potential of contemporary analytical isotachophoresis. Although it is not being used on a mass scale, its special features are attracting continued interest resulting in applications of isotachophoresis both as a stand-alone analytical method and as a part of multidimensional separation techniques.


Assuntos
Isotacoforese , Simulação por Computador , Eletroforese Capilar/métodos , Isotacoforese/métodos , Dispositivos Lab-On-A-Chip
13.
J Sep Sci ; 45(17): 3339-3347, 2022 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-35661409

RESUMO

An analytical test procedure for the direct determination of trace levels of perchlorate in drinking water by isotachophoresis combined with capillary zone electrophoresis was developed. A capillary electrophoresis analyzer with column coupling technology, capable of combining capillaries with different internal diameters, was employed in combination with conductivity detection. This combination of the capillary electrophoresis techniques facilitated preconcentration of the trace analytes and elimination of potentially interfering macro-components. To eliminate the influence of weak and moderately strong acids on the migration of perchlorate, acidic leading electrolyte (pH 3.2) in the isotachophoresis step and acidic background electrolyte (pH 3.9) in the zone electrophoresis step were chosen. The addition of polyvinylpyrrolidone into the electrolytes enhanced the resolution of perchlorate from other anions, especially remaining anionic macro-components. The developed method is characterized by good repeatability of migration time (relative standard deviation less than 0.2%) as well as peak area (relative standard deviation less than 5.9%), linearity (R = 0.9996), recoveries (100-112%), and sample throughput (90 samples/24 h). The limit of quantitation for perchlorate in drinking water was achieved at 12.5 nmol/L (1.25 µg/L). This approach is more sensitive and more robust than transient isotachophoresis and offers advantages over some more established analytical techniques such as ion chromatography.


Assuntos
Água Potável , Isotacoforese , Ânions , Eletrólitos/química , Eletroforese , Eletroforese Capilar/métodos , Isotacoforese/métodos , Percloratos
14.
Chem Rev ; 122(15): 12904-12976, 2022 08 10.
Artigo em Inglês | MEDLINE | ID: mdl-35732018

RESUMO

Isotachophoresis (ITP) is a versatile electrophoretic technique that can be used for sample preconcentration, separation, purification, and mixing, and to control and accelerate chemical reactions. Although the basic technique is nearly a century old and widely used, there is a persistent need for an easily approachable, succinct, and rigorous review of ITP theory and analysis. This is important because the interest and adoption of the technique has grown over the last two decades, especially with its implementation in microfluidics and integration with on-chip chemical and biochemical assays. We here provide a review of ITP theory starting from physicochemical first-principles, including conservation of species, conservation of current, approximation of charge neutrality, pH equilibrium of weak electrolytes, and so-called regulating functions that govern transport dynamics, with a strong emphasis on steady and unsteady transport. We combine these generally applicable (to all types of ITP) theoretical discussions with applications of ITP in the field of microfluidic systems, particularly on-chip biochemical analyses. Our discussion includes principles that govern the ITP focusing of weak and strong electrolytes; ITP dynamics in peak and plateau modes; a review of simulation tools, experimental tools, and detection methods; applications of ITP for on-chip separations and trace analyte manipulation; and design considerations and challenges for microfluidic ITP systems. We conclude with remarks on possible future research directions. The intent of this review is to help make ITP analysis and design principles more accessible to the scientific and engineering communities and to provide a rigorous basis for the increased adoption of ITP in microfluidics.


Assuntos
Isotacoforese , Técnicas Analíticas Microfluídicas , Eletrólitos , Isotacoforese/métodos , Técnicas Analíticas Microfluídicas/métodos , Microfluídica
15.
J Chromatogr A ; 1673: 463087, 2022 Jun 21.
Artigo em Inglês | MEDLINE | ID: mdl-35490463

RESUMO

The impact of the two essential parameters, the complexation constant and the mobility of the formed diastereomeric complex, on stereoisomer separation in presence of a neutral chiral selector was assessed by computer simulation for an electrokinetic chromatography configuration with a uniform background electrolyte and one with a cationic discontinues buffer system of isotachophoretic nature. With two enantiomers of norpseudoephedrine as model analytes, data for seven cases featuring complexation in free solution with various combinations of input values, complexation with an immobilized selector and no complexation were analyzed in a hitherto unexplored way. For the uniform buffer study, the determined differences of the effective mobilities and separation selectivities of the stereoisomers were found to be equal to those calculated with the well-known algebraic equations. For the isotachophoretic system with its Kohlrausch adjusted zones, separation is also based on differences in effective mobilities, but the mobility differences cannot be predicted with the same algebraic equation. In both techniques, chiral separations occur due to the presence of the selector and if there is inequality between the mobilities of the transient diastereomeric complexes and the mobility of the free, uncomplexed analyte. Separation of the stereoisomers is possible when complexation constants, complex mobilities or both of these parameters differ. In the isotachophoretic separation a migrating steady-state is formed in which analytes either establish consecutive zones with plateau concentrations or, if present in an insufficient amount, as a peak-like distribution that migrates within a moving steady-state boundary. Simulation data illustrate for the first time the use of a spacer compound that establishes an isotachophoretic zone between enantiomers and thereby provides complete separation of the enantiomers and the possibility of individual detection in peak-mode isotachophoresis. They demonstrate that such an approach could be employed to assess the enantiomeric purity of a chiral compound.


Assuntos
Isotacoforese , beta-Ciclodextrinas , Cromatografia , Simulação por Computador , Isotacoforese/métodos , Estereoisomerismo , beta-Ciclodextrinas/química
16.
Analyst ; 147(9): 1944-1951, 2022 May 03.
Artigo em Inglês | MEDLINE | ID: mdl-35393990

RESUMO

This research describes a nanomaterial-assisted thread-based isotachophoresis (TB-ITP) setup for the clean-up, preconcentration, and trapping of alkaloids (coptisine, berberine, and palmatine) in biological fluids, followed by their on-thread desorption electrospray ionization mass spectrometry (DESI-MS) determination. The reusable TB-ITP setup and a DESI compatible thread holder were 3D printed. A single nylon thread was employed as the ITP substrate for solute isolation and enrichment, and a short piece of graphene oxide (GO) functionalized nylon thread was tied around the main 'separation' thread as the 'trap' for the trapping of ITP focused alkaloids. Compared to the direct DESI-MS sample analysis, the sensitivity of the proposed method for the model solutes was increased up to 10-fold, benefiting from the TB-ITP focusing and enrichment strategy. This proof-of-concept use of nanomaterial-modified threads in electrofluidic separation and concentration procedures opens up a promising avenue to explore, particularly with regard to the sensitivity and selectivity of thread-based electrofluidic separation coupled with ambient ionization MS.


Assuntos
Alcaloides , Isotacoforese , Nanoestruturas , Isotacoforese/métodos , Nylons , Espectrometria de Massas por Ionização por Electrospray/métodos
17.
Anal Chim Acta ; 1200: 339435, 2022 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-35256135

RESUMO

The high-efficiency separation and extraction of short fragments of cell-free DNA (cfDNA) remain challenging due to their low abundance and short lengths. This study presents a method for separating short cfDNA fragments, with lengths ranging from about 100 to 200 base pairs, from liquid human plasma samples into separable and extractable bands as solid agarose gel slabs. To achieve this, a novel millimeter-scale fluidic device is used for sample handling, transient isotachophoresis, and extraction. The device features open-to-atmosphere liquid chambers that define and manually actuated (i.e., movable) agarose-made gate valve structures. The agarose gates then define discrete zones for buffers, sample injection, DNA pre-concentration via isotachophoresis, size-based gel separation, and DNA-band extraction. As a demonstration of its efficacy, the device is applied to the enrichment and purification of M. tuberculosis genomic DNA fragments spiked in human plasma samples. This purified cfDNA is analyzed using the quantitative polymerase chain reaction (qPCR) of the IS6110 repetitive sequence in the M. tuberculosis genome. The data from this study demonstrates that high sensitivity can be achieved in cfDNA detection, as shown by the comparison with a typical solid-phase extraction method and buffer spiked with cfDNA. Evidence is presented that suggests plasma peptides generated by treatment of the sample with proteinase K acts as endogenous spacer molecules, which improve the resolution and purification of DNA relative to the marker dye and other contaminants that decrease the signal level in qPCR.


Assuntos
Ácidos Nucleicos Livres , DNA , Isotacoforese , Mycobacterium tuberculosis , Ácidos Nucleicos Livres/análise , DNA/análise , Humanos , Isotacoforese/métodos , Mycobacterium tuberculosis/química , Mycobacterium tuberculosis/genética
18.
Electrophoresis ; 43(3): 417-424, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-34633678

RESUMO

An online method involving transient electrokinetic dosing and ITP with neutralization reaction boundary (NRB) and/or carrier ampholyte-free isoelectric focusing (CAF IEF) was developed for the preconcentration, preseparation, and analytical determination of glyphosate in aqueous samples containing low concentrations of the analyte of interest. Various parameters were investigated in the framework of an optimization study with the aim of achieving the maximum concentration limit of detection (cLOD) decrease in minimum time. The proposed method used CAF IEF and/or ITP with NRB. The sample was dosed to the column on the stationary reaction boundary (CAF IEF) and/or moving reaction boundary (ITP with NRB), whereat a sharp pH step exists. Here, charge reversal was due to the ampholytes, and/or acid accumulation occurred because of charge loss. Similarly, the accumulated sample was mobilized with TE and analyzed using classical ITP in the second analytical column. Glyphosate (GLY), the analyte of interest, was chosen as a model substance for ITP with NRB and preconcentration as well as focusing preconcentration and CAF IEF using the asymmetric purpose-built NRB. On one side of the asymmetric boundary was the zone of acidic pH; while the opposite side comprised a neutral/basic non-conductive zone of the ampholyte-in this case, GLY. Such an arrangement enables the use of a lower pH on the acidic side, which allows the focusing of strongly acidic ampholytes and the accumulation of weak acids. The electrolyte composition and the dosing time were optimized, and a 14-fold accumulation was achieved in 25 min compared to that by classical ITP and a 180-fold accumulation was achieved through CAF IEF and preconcentration with a glyphosate sample. Both methods are simple and can be conducted using all commercial ITP systems.


Assuntos
Isotacoforese , Misturas Anfolíticas , Soluções Tampão , Focalização Isoelétrica/métodos , Isotacoforese/métodos , Limite de Detecção
19.
Electrophoresis ; 43(9-10): 998-1009, 2022 05.
Artigo em Inglês | MEDLINE | ID: mdl-34597419

RESUMO

The possibility to investigate analytes at ultra-low concentration levels still remains a hot topic in bioanalysis. In this area, various preconcentration techniques are an integral part of analytical procedures. When applying electromigration separation techniques, an isotachophoresis has been advantageously employed many times for this purpose. To solve current biomedical tasks effectively, an advanced two-dimensional isotachophoretic instrument (in a hydrodynamically closed separation system with an enhanced sample load capacity) hyphenated with mass spectrometry (ITP-ITP-MS) has been proposed by Foret and coworkers. As a continuation, this work represents the first study dealing with a full validation of an ITP-ITP-MS method. In order to see the benefits of an online ITP sample pretreatment (preconcentration and clean-up) on the performance parameters, the developed 2D ITP-MS method was compared with a corresponding 1D ITP-MS method. Application potentialities of the compared methods were demonstrated via a determination of two B vitamins, namely thiamine and pyridoxine, in human urine samples. The developed 2D ITP-MS method showed its enhanced effectivity and usefulness for a routine biomedical use (here, a reliable screening of trace B vitamins in human urine without an offline sample preparation).


Assuntos
Isotacoforese , Complexo Vitamínico B , Eletroforese Capilar/métodos , Humanos , Isotacoforese/métodos , Espectrometria de Massas
20.
Electrophoresis ; 43(4): 543-547, 2022 02.
Artigo em Inglês | MEDLINE | ID: mdl-34837243

RESUMO

A frequent limitation of electroporation (EP) and chemical transformation (CT) are the need of tedious and time-consuming procedures for inducing transformation competence, the substantial number of cells required, and the low transformation yields typically achieved. Here, we show a new and rapid electrokinetic method for transformation of small number of noncompetent Escherichia coli TOP10 cells (2-3 × 105 ) at room temperature. Escherichia coli TOP10 cells and plasmid DNA are sequentially injected into a 50 µm ID capillary and focused into 11.5 nL by isotachophoresis (ITP) induced by application of high DC voltage (-16 kV). Through ITP, a large excess of plasmid DNA is brought in contact with the cell surface, with the contact time adjusted by application of a counter-pressure (1.3 psi) opposing the ITP movement. The transformation rate was more than 1000-fold higher compared to EP and CT at survival rates greater than 60%.


Assuntos
Isotacoforese , DNA , Escherichia coli/genética , Isotacoforese/métodos
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