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1.
Commun Biol ; 5(1): 225, 2022 03 10.
Artigo em Inglês | MEDLINE | ID: mdl-35273335

RESUMO

Late 2020, SARS-CoV-2 Alpha variant emerged in United Kingdom and gradually replaced G614 strains initially involved in the global spread of the pandemic. In this study, we use a Syrian hamster model to compare a clinical strain of Alpha variant with an ancestral G614 strain. The Alpha variant succeed to infect animals and to induce a pathology that mimics COVID-19. However, both strains replicate to almost the same level and induced a comparable disease and immune response. A slight fitness advantage is noted for the G614 strain during competition and transmission experiments. These data do not corroborate the epidemiological situation observed during the first half of 2021 in humans nor reports that showed a more rapid replication of Alpha variant in human reconstituted bronchial epithelium. This study highlights the need to combine data from different laboratories using various animal models to decipher the biological properties of newly emerging SARS-CoV-2 variants.


Assuntos
COVID-19 , Modelos Animais de Doenças , Mesocricetus , SARS-CoV-2/fisiologia , Animais , Anticorpos Neutralizantes/sangue , COVID-19/sangue , COVID-19/imunologia , COVID-19/virologia , Citocinas/genética , Feminino , Trato Gastrointestinal/virologia , Genoma Viral , Pulmão/virologia , Líquido da Lavagem Nasal/virologia , SARS-CoV-2/genética , Replicação Viral
2.
Am J Respir Cell Mol Biol ; 64(1): 126-137, 2021 01.
Artigo em Inglês | MEDLINE | ID: mdl-33095645

RESUMO

Inhalation of tobacco smoke has been linked to increased risk of viral infection, such as influenza. Inhalation of electronic-cigarette (e-cigarette) aerosol has also recently been linked to immune suppression within the respiratory tract, specifically the nasal mucosa. We propose that changes in the nasal mucosal immune response modify antiviral host-defense responses in e-cigarette users. Nonsmokers, cigarette smokers, and e-cigarette users were inoculated with live-attenuated influenza virus (LAIV) to safely examine the innate immune response to influenza infection. Before and after LAIV inoculation, we collected nasal epithelial-lining fluid, nasal lavage fluid, nasal-scrape biopsy specimens, urine, and blood. Endpoints examined include cytokines and chemokines, influenza-specific IgA, immune-gene expression, and markers of viral load. Statistical analysis included primary comparisons of cigarette and e-cigarette groups with nonsmokers, as well as secondary analysis of demographic factors as potential modifiers. Markers of viral load did not differ among the three groups. Nasal-lavage-fluid anti-LAIV IgA levels increased in nonsmokers after LAIV inoculation but did not increase in e-cigarette users and cigarette smokers. LAIV-induced gene-expression changes in nasal biopsy specimens differed in cigarette smokers and e-cigarette users as compared with nonsmokers, with a greater number of genes changed in e-cigarette users, mostly resulting in decreased expression. The top downregulated genes in cigarette smokers were SMPD3, NOS2A, and KLRB1, and the top downregulated genes in e-cigarette users were MR1, NT5E, and HRAS. Similarly, LAIV-induced cytokine levels in nasal epithelial-lining fluid differed among the three groups, including decreased antiviral host-defense mediators (IFNγ, IL6, and IL12p40). We also detected that sex interacted with tobacco-product exposure to modify LAIV-induced immune-gene expression. Our results demonstrate that e-cigarette use altered nasal LAIV-induced immune responses, including gene expression, cytokine and chemokine release, and LAIV-specific IgA levels. Together, these data suggest that e-cigarette use induces changes in the nasal mucosa that are consistent with the potential for altered respiratory antiviral host-defense function.Clinical trial registered with www.clinicaltrials.gov (NCT02019745).


Assuntos
Imunidade nas Mucosas/efeitos dos fármacos , Vacinas contra Influenza/imunologia , Mucosa Nasal/efeitos dos fármacos , Produtos do Tabaco/efeitos adversos , Vacinas Atenuadas/imunologia , Vaping/efeitos adversos , Vaping/imunologia , Adulto , Citocinas/imunologia , Feminino , Humanos , Imunidade Inata/efeitos dos fármacos , Imunidade Inata/imunologia , Imunidade nas Mucosas/imunologia , Inflamação/imunologia , Inflamação/virologia , Influenza Humana/imunologia , Influenza Humana/virologia , Masculino , Líquido da Lavagem Nasal/imunologia , Líquido da Lavagem Nasal/virologia , Mucosa Nasal/imunologia , Fumaça/efeitos adversos , Adulto Jovem
3.
Nat Microbiol ; 5(1): 27-33, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31768027

RESUMO

Here we report the isolation of the influenza A/H1N1 2009 pandemic (A/H1N1pdm) and A/H3N2 viruses carrying an I38T mutation in the polymerase acidic protein-a mutation that confers reduced susceptibility to baloxavir marboxil-from patients before and after treatment with baloxavir marboxil in Japan. These variants showed replicative abilities and pathogenicity that is similar to those of wild-type isolates in hamsters; they also transmitted efficiently between ferrets by respiratory droplets.


Assuntos
Antivirais/farmacologia , Farmacorresistência Viral , Vírus da Influenza A/efeitos dos fármacos , Vírus da Influenza A/patogenicidade , Influenza Humana/transmissão , Influenza Humana/virologia , Oxazinas/farmacologia , Piridinas/farmacologia , Tiepinas/farmacologia , Triazinas/farmacologia , Animais , Cricetinae , Dibenzotiepinas , Furões , Humanos , Vírus da Influenza A/isolamento & purificação , Vírus da Influenza A/fisiologia , Japão , Camundongos , Morfolinas , Líquido da Lavagem Nasal/virologia , Infecções por Orthomyxoviridae/transmissão , Infecções por Orthomyxoviridae/virologia , Piridonas , RNA Polimerase Dependente de RNA/genética , Proteínas Virais/genética , Virulência , Replicação Viral
4.
Int J Cancer ; 145(8): 2260-2266, 2019 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-30698824

RESUMO

Nasopharyngeal carcinoma (NPC) is an epithelial cancer of the nasopharynx which is highly associated with Epstein-Barr virus (EBV). Worldwide, most of the top 20 countries with the highest incidence and mortality rates of NPC are low- and middle-income countries. Many studies had demonstrated that EBV could be detected in the tissue, serum and plasma of NPC patients. In this study, we explored the potential of assays based on non-invasive nasal washings (NW) as a diagnostic and prognostic tool for NPC. A total of 128 patients were evaluated for NW EBV DNA loads and a subset of these samples were also tested for 27 EBV and human miRNAs shortlisted from literature. EBV DNA and seven miRNAs showed area under the receiver operating characteristic curve (AUC) values of more than 0.7, suggestive of their potential utility to detect NPC. Logistic regression analyses suggested that combination of two NW assays that test for EBNA-1 and hsa-miR-21 had the best performance in detecting NPC. The trend of NW EBV DNA load matched with clinical outcome of 71.4% (10 out of 14) NPC patients being followed-up. In summary, the non-invasive NW testing panel may be particularly useful for NPC screening in remote areas where healthcare facilities and otolaryngologists are lacking, and may encourage frequent testing of individuals in the high risk groups who are reluctant to have their blood tested. However, further validation in an independent cohort is required to strengthen the utility of this testing panel as a non-invasive detection tool for NPC.


Assuntos
Infecções por Vírus Epstein-Barr/diagnóstico , Herpesvirus Humano 4/isolamento & purificação , MicroRNAs/genética , Líquido da Lavagem Nasal/virologia , Carcinoma Nasofaríngeo/diagnóstico , Neoplasias Nasofaríngeas/diagnóstico , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , DNA Viral/genética , Detecção Precoce de Câncer/métodos , Infecções por Vírus Epstein-Barr/virologia , Feminino , Perfilação da Expressão Gênica/métodos , Herpesvirus Humano 4/genética , Herpesvirus Humano 4/fisiologia , Humanos , Masculino , Pessoa de Meia-Idade , Carcinoma Nasofaríngeo/genética , Carcinoma Nasofaríngeo/virologia , Neoplasias Nasofaríngeas/genética , Neoplasias Nasofaríngeas/virologia , Nasofaringe/metabolismo , Nasofaringe/virologia , Reação em Cadeia da Polimerase/métodos , Prognóstico , Curva ROC , Adulto Jovem
6.
Diagn Microbiol Infect Dis ; 88(2): 115-119, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28365060

RESUMO

Respiratory Pathogen 13 Detection Kit (13× kit) is able to simultaneously detect 11 respiratory viruses, Mycoplasma pneumoniae (MP) and Chlamydia in a single reaction. Using 572 Nasopharyngeal aspirates collected from hospitalized children, the clinical performance of 13× kit for detecting 11 respiratory viruses was evaluated in comparison with a routinely used 2-tube multiplex reverse transcription PCR assay (2-tube assay) at provincial Centers for Disease Control and Prevention in China. The clinical performance of 13× kit for detecting MP and Chlamydia was evaluated by commercial real-time quantitative PCR (qPCR) kits or sequencing. For tested viruses, the assay concordance was 95.98% and the kappa coefficient was 0.89. All the MP and Chlamydia positive samples detected by 13× kit were confirmed as true positives. The utilization of the 13× kit in clinical settings will be helpful for doctors to assess clinical outcome according to virus type or multiple infections, and to limit the use of antibiotics.


Assuntos
Infecções por Chlamydia/diagnóstico , Chlamydia/genética , Mycoplasma pneumoniae/genética , Pneumonia por Mycoplasma/diagnóstico , Infecções Respiratórias/diagnóstico , Reação em Cadeia da Polimerase Via Transcriptase Reversa/métodos , Viroses/diagnóstico , Vírus/genética , Adolescente , Criança , Criança Hospitalizada , Pré-Escolar , Chlamydia/isolamento & purificação , Infecções por Chlamydia/microbiologia , Feminino , Humanos , Lactente , Recém-Nascido , Masculino , Mycoplasma pneumoniae/isolamento & purificação , Líquido da Lavagem Nasal/microbiologia , Líquido da Lavagem Nasal/virologia , Pneumonia por Mycoplasma/microbiologia , Vírus/isolamento & purificação
7.
Benef Microbes ; 8(2): 207-215, 2017 Apr 26.
Artigo em Inglês | MEDLINE | ID: mdl-28343401

RESUMO

Ingestion of probiotics appears to have modest effects on the incidence of viral respiratory infection. The mechanism of these effects is not clear; however, there is evidence from animal models that the probiotic may have an effect on innate immune responses to pathogens. The purpose of this randomised, placebo-controlled study was to determine the effect of administration of Bifidobacterium animalis subspecies lactis Bl-04 on innate and adaptive host responses to experimental rhinovirus challenge. The effect on the response of chemokine (C-X-C motif) ligand 8 (CXCL8) to rhinovirus infection was defined as the primary endpoint for the study. 152 seronegative volunteers who had been supplemented for 28 days, 73 with probiotic and 79 with placebo, were challenged with RV-A39. Supplement or placebo administration was then continued for five days during collection of specimens for assessment of host response, infection, and symptoms. 58 probiotic and 57 placebo-supplemented volunteers met protocol-defined criteria for analysis. Probiotic resulted in higher nasal lavage CXCL8 on day 0 prior to virus challenge (90 vs 58 pg/ml, respectively, P=0.04, ANCOVA). The CXCL8 response to rhinovirus infection in nasal lavage was significantly reduced in the probiotic treated group (P=0.03, ANCOVA). Probiotic was also associated with a reduction in nasal lavage virus titre and the proportion of subjects shedding virus in nasal secretions (76% in the probiotic group, 91% in the placebo group, P=0.04, Fisher Exact test). The administration of probiotic did not influence lower respiratory inflammation (assessed by exhaled nitric oxide), subjective symptom scores, or infection rate. This study demonstrates that ingestion of Bl-04 may have an effect on the baseline state of innate immunity in the nose and on the subsequent response of the human host to rhinovirus infection. Clinicaltrials.gov registry number: NCT01669603.


Assuntos
Bifidobacterium animalis , Resfriado Comum/terapia , Imunidade Inata/efeitos dos fármacos , Probióticos/uso terapêutico , Rhinovirus/imunologia , Eliminação de Partículas Virais/efeitos dos fármacos , Imunidade Adaptativa/efeitos dos fármacos , Adulto , Resfriado Comum/virologia , Suplementos Nutricionais/microbiologia , Método Duplo-Cego , Feminino , Humanos , Inflamação/tratamento farmacológico , Interleucina-6/análise , Interleucina-8/análise , Masculino , Líquido da Lavagem Nasal/química , Líquido da Lavagem Nasal/virologia , Placebos/administração & dosagem
8.
Infect Dis (Lond) ; 48(1): 82-6, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26365560

RESUMO

BACKGROUND: The effect of potentially pathogenic bacteria (PPB) on disease severity in patients with bronchiolitis is understudied. METHODS: This prospective study was carried out in the Children's Hospital of Soochow University during the 2012-2013 autumn and winter seasons. We enrolled consecutive children < 2 years of age hospitalized with an attending physician's diagnosis of bronchiolitis. Nasopharyngeal aspirate samples were tested for multiple respiratory viruses and cultured for Streptococcus pneumoniae, Haemophilus influenzae, Moraxella catarrhalis, and Staphylococcus aureus. RESULTS: In all, 30% (188 patients) were positive for Strep. pneumoniae, H. influenzae, M. catarrhalis, and Staph. aureus. Length of stay (LOS) for patients with PPB was 4.0 days (interquartile range, IQR, 25th-75th percentile: 3.0-6.0 days) versus 3.0 days (IQR, 3.0-5.0 days) for patients without PPB (p < 0.001). However, requirement and duration of supplemental oxygen were not significantly different between the two groups. H. influenzae was an independent risk factor for hospital LOS ≥ 5.0 days (adjusted odds ratio, 1.75; 95% confidence interval, 1.06-2.91). The presence of PPB was not associated with increased risk of supplemental oxygen requirement. CONCLUSIONS: Our study demonstrated that pediatricians should evaluate for PPB in patients with bronchiolitis, especially when they present with RSV infection, fever or percentage of neutrophils > 40%. The presence of H. influenzae in nasal aspirates is associated with longer LOS in patients with bronchiolitis.


Assuntos
Bactérias/isolamento & purificação , Infecções Bacterianas/microbiologia , Bronquiolite/microbiologia , Líquido da Lavagem Nasal/microbiologia , Bronquiolite/diagnóstico , Pré-Escolar , Feminino , Haemophilus influenzae/isolamento & purificação , Haemophilus influenzae/patogenicidade , Humanos , Lactente , Tempo de Internação , Masculino , Moraxella catarrhalis/isolamento & purificação , Moraxella catarrhalis/patogenicidade , Líquido da Lavagem Nasal/virologia , Estudos Prospectivos , Infecções por Vírus Respiratório Sincicial/diagnóstico , Índice de Gravidade de Doença , Staphylococcus aureus/isolamento & purificação , Staphylococcus aureus/patogenicidade , Streptococcus pneumoniae/isolamento & purificação , Streptococcus pneumoniae/patogenicidade
9.
Clin Exp Immunol ; 183(2): 248-57, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26437614

RESUMO

Respiratory syncytial virus (RSV)-specific CD8(+) T cell responses do not protect against reinfection. Activation of mammalian target of rapamycin (mTOR) impairs memory CD8(+) T cell differentiation. Our hypothesis was that RSV inhibits the formation of CD8(+) T cells memory responses through mTOR activation. To explore this, human and mouse T cells were used. RSV induced mTOR phosphorylation at Ser2448 in CD8 T cells. mTOR activation by RSV was completely inhibited using rapamycin. RSV-infected children presented higher mTOR gene expression on nasal washes comparing to children infected with metapneumovirus and rhinovirus. In addition, RSV-infected infants presented a higher frequency of CD8(+) pmTORser2448(+) T cells in nasal washes compared to RSV-negative infants. Rapamycin treatment increased the frequency of mouse CD8 RSV-M282-90 pentamer-positive T cells and the frequency of RSV-specific memory T cells precursors. These data demonstrate that RSV is activating mTOR directly in CD8 T cells, indicating a role for mTOR during the course of RSV infection.


Assuntos
Linfócitos T CD8-Positivos/imunologia , Linfócitos T CD8-Positivos/metabolismo , Líquido da Lavagem Nasal/imunologia , Infecções por Vírus Respiratório Sincicial/imunologia , Infecções por Vírus Respiratório Sincicial/metabolismo , Vírus Sinciciais Respiratórios/imunologia , Serina-Treonina Quinases TOR/metabolismo , Animais , Linfócitos T CD8-Positivos/efeitos dos fármacos , Criança , Humanos , Memória Imunológica/efeitos dos fármacos , Imunossupressores/farmacologia , Lactente , Ativação Linfocitária/efeitos dos fármacos , Camundongos , Líquido da Lavagem Nasal/virologia , Fosforilação , Infecções por Vírus Respiratório Sincicial/virologia , Sirolimo/farmacologia , Serina-Treonina Quinases TOR/genética
10.
Clin Vaccine Immunol ; 22(10): 1109-20, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26291090

RESUMO

In North American swine, there are numerous antigenically distinct H1 influenza A virus (IAV) variants currently circulating, making vaccine development difficult due to the inability to formulate a vaccine that provides broad cross-protection. Experimentally, live-attenuated influenza virus (LAIV) vaccines demonstrate increased cross-protection compared to inactivated vaccines. However, there is no standardized assay to predict cross-protection following LAIV vaccination. Hemagglutination-inhibiting (HI) antibody in serum is the gold standard correlate of protection following IAV vaccination. LAIV vaccination does not induce a robust serum HI antibody titer; however, a local mucosal antibody response is elicited. Thus, a live-animal sample source that could be used to evaluate LAIV immunogenicity and cross-protection is needed. Here, we evaluated the use of oral fluids (OF) and nasal wash (NW) collected after IAV inoculation as a live-animal sample source in an enzyme-linked immunosorbent assay (ELISA) to predict cross-protection in comparison to traditional serology. Both live-virus exposure and LAIV vaccination provided heterologous protection, though protection was greatest against more closely phylogenetically related viruses. IAV-specific IgA was detected in NW and OF samples and was cross-reactive to representative IAV from each H1 cluster. Endpoint titers of cross-reactive IgA in OF from pigs exposed to live virus was associated with heterologous protection. While LAIV vaccination provided significant protection, LAIV immunogenicity was reduced compared to live-virus exposure. These data suggest that OF from pigs inoculated with wild-type IAV, with surface genes that match the LAIV seed strain, could be used in an ELISA to assess cross-protection and the antigenic relatedness of circulating and emerging IAV in swine.


Assuntos
Proteção Cruzada , Reações Cruzadas , Vírus da Influenza A/imunologia , Vacinas contra Influenza/imunologia , Boca/imunologia , Líquido da Lavagem Nasal/imunologia , Infecções por Orthomyxoviridae/veterinária , Administração Intranasal , Animais , Anticorpos Antivirais/sangue , Ensaio de Imunoadsorção Enzimática , Testes de Inibição da Hemaglutinação , Imunoglobulina A/biossíntese , Vírus da Influenza A Subtipo H1N1/imunologia , Vírus da Influenza A Subtipo H1N1/patogenicidade , Vírus da Influenza A Subtipo H3N2/imunologia , Vírus da Influenza A/classificação , Vírus da Influenza A/genética , Vacinas contra Influenza/administração & dosagem , Boca/virologia , Líquido da Lavagem Nasal/virologia , Infecções por Orthomyxoviridae/imunologia , Infecções por Orthomyxoviridae/prevenção & controle , Infecções por Orthomyxoviridae/virologia , Suínos , Doenças dos Suínos/prevenção & controle , Vacinas Atenuadas/administração & dosagem , Vacinas Atenuadas/imunologia
11.
Clin Infect Dis ; 61(2): 192-202, 2015 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-25847977

RESUMO

BACKGROUND: The management of respiratory virus infections prior to hematopoietic cell transplant (HCT) is difficult. We examined whether respiratory virus detection before HCT influenced the requirement for bronchoscopy, hospitalization, and overall survival following HCT. METHODS: Pre-HCT and weekly post-HCT nasal washes were collected through day 100 from patients with and without symptoms. Samples were tested by multiplex polymerase chain reaction for respiratory syncytial virus, parainfluenza viruses 1-4, influenza A and B, human metapneumovirus, adenovirus, and human rhinoviruses, coronaviruses, and bocavirus. RESULTS: Of 458 patients, 116 (25%) had respiratory viruses detected pre-HCT. Overall, patients with viruses detected pre-HCT had fewer days alive and out of the hospital and lower survival at day 100 (adjusted hazard ratio [aHR], 2.4; 95% confidence interval [CI], 1.3-4.5; P = .007) than patients with negative samples; this risk was also present with rhinovirus alone (aHR for mortality, 2.6; 95% CI, 1.2-5.5; P = .01). No difference in bronchoscopy incidence was seen in patients with and without respiratory viruses (aHR, 1.3; 95% CI, .8-2.0; P = .32). In symptomatic patients, those with respiratory viruses detected had increased overall mortality compared with patients without viruses detected (unadjusted HR, 3.5; 95% CI, 1.0-12.1; P = .05); among asymptomatic patients, detection of respiratory viruses was not associated with increased mortality. CONCLUSIONS: These data support routine testing for respiratory viruses among symptomatic patients before HCT, and delay of transplant with virus detection when feasible, even for detection of rhinovirus alone. Further study is needed to address whether asymptomatic patients should undergo screening for respiratory virus detection before HCT.


Assuntos
Transplante de Células-Tronco Hematopoéticas , Líquido da Lavagem Nasal/virologia , Vírus Sinciciais Respiratórios/isolamento & purificação , Infecções Respiratórias/diagnóstico , Infecções Respiratórias/virologia , Viroses/diagnóstico , Adolescente , Adulto , Idoso , Criança , Coronavirus/isolamento & purificação , Feminino , Humanos , Masculino , Metapneumovirus/isolamento & purificação , Pessoa de Meia-Idade , Reação em Cadeia da Polimerase Multiplex , Avaliação de Resultados da Assistência ao Paciente , Estudos Prospectivos , RNA Viral/análise , Rhinovirus/isolamento & purificação , Fatores de Tempo , Viroses/virologia , Adulto Jovem
12.
Infect Dis (Lond) ; 47(8): 523-9, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25800059

RESUMO

BACKGROUND: Respiratory viral infection is the main cause of exacerbations of chronic obstructive pulmonary disease (COPD) in all age groups. The present study aimed to find out the association between viral infection in exacerbated and stable patients with COPD as well as evaluating the frequency of respiratory viruses in the Iranian exacerbated patients. METHODS: The study included 170 patients as the sample group with acute exacerbations and a control group consisting of 96 stable patients over a period of 3 years. Reverse transcription- nested polymerase chain reaction (RT-nested PCR) and nested PCR methods were used to diagnose the presence of 16 respiratory viruses. RESULTS: Viral infection was detected in 81 (47.6%) exacerbations and 24 (25%) stable patients (p < 0.05). Adenovirus was more frequent among the exacerbated patients than the stable patients (p < 0.05). Furthermore, influenza virus, respiratory syncytial virus, and enterovirus turned out to be the most common viruses in both groups. Moreover, respiratory viral co-infection has a possible role in exacerbation, severity, and longer hospitalization. Muscle pain and fever were found as significant symptoms in the infected patients with exacerbations. CONCLUSIONS: The current study investigated the probable roles of the respiratory viruses, and dual infections during acute exacerbations of COPD. Since climate-dependent respiratory viral incidence patterns in Iran are often dissimilar, preparing a comprehensive global model of respiratory infections with seasonal details in different geographical zones might decrease the morbidity and mortality rate in exacerbations of COPD.


Assuntos
Doença Pulmonar Obstrutiva Crônica/complicações , Doença Pulmonar Obstrutiva Crônica/fisiopatologia , Infecções Respiratórias/complicações , Infecções Respiratórias/virologia , Viroses/complicações , Idoso , Estudos de Casos e Controles , Coinfecção , Progressão da Doença , Enterovirus/isolamento & purificação , Feminino , Humanos , Irã (Geográfico)/epidemiologia , Masculino , Pessoa de Meia-Idade , Líquido da Lavagem Nasal/virologia , Faringe/virologia , Reação em Cadeia da Polimerase , Doença Pulmonar Obstrutiva Crônica/epidemiologia , Vírus Sinciciais Respiratórios/isolamento & purificação , Infecções Respiratórias/epidemiologia , Estações do Ano , Escarro/virologia , Fatores de Tempo , Viroses/epidemiologia
13.
Mem Inst Oswaldo Cruz ; 110(1): 101-5, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25742269

RESUMO

The 2009 pandemic influenza A virus outbreak led to the systematic use of the neuraminidase (NA) inhibitor oseltamivir (OST). Consequently, OST-resistant strains, carrying the mutation H275Y, emerged in the years after the pandemics, with a prevalence of 1-2%. Currently, OST-resistant strains have been found in community settings, in untreated individuals. To spread in community settings, H275Y mutants must contain additional mutations, collectively called permissive mutations. We display the permissive mutations in NA of OST-resistant A(H1N1)pdm09 virus found in Brazilian community settings. The NAs from 2013 are phylogenetically distinct from those of 2012, indicating a tendency of positive selection of NAs with better fitness. Some previously predicted permissive mutations, such as V241I and N369K, found in different countries, were also detected in Brazil. Importantly, the change D344N, also predicted to compensate loss of fitness imposed by H275Y mutation, was found in Brazil, but not in other countries in 2013. Our results reinforce the notion that OST-resistant A(H1N1)pdm09 strains with compensatory mutations may arise in an independent fashion, with samples being identified in different states of Brazil and in different countries. Systematic circulation of these viral strains may jeopardise the use of the first line of anti-influenza drugs in the future.


Assuntos
Antivirais/uso terapêutico , Farmacorresistência Viral/genética , Vírus da Influenza A Subtipo H1N1/efeitos dos fármacos , Vírus da Influenza A Subtipo H1N1/genética , Influenza Humana/virologia , Mutação , Oseltamivir/uso terapêutico , Adulto , Brasil , Feminino , Humanos , Vírus da Influenza A Subtipo H1N1/classificação , Influenza Humana/tratamento farmacológico , Taxa de Mutação , Líquido da Lavagem Nasal/virologia , Neuraminidase/genética , Filogenia , Filogeografia , RNA Viral/isolamento & purificação
14.
Mem Inst Oswaldo Cruz ; 110(1): 138-41, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25742274

RESUMO

Human respiratory syncytial virus (HRSV) is an important respiratory pathogens among children between zero-five years old. Host immunity and viral genetic variability are important factors that can make vaccine production difficult. In this work, differences between biological clones of HRSV were detected in clinical samples in the absence and presence of serum collected from children in the convalescent phase of the illness and from their biological mothers. Viral clones were selected by plaque assay in the absence and presence of serum and nucleotide sequences of the G2 and F2 genes of HRSV biological clones were compared. One non-synonymous mutation was found in the F gene (Ile5Asn) in one clone of an HRSV-B sample and one non-synonymous mutation was found in the G gene (Ser291Pro) in four clones of the same HRSV-B sample. Only one of these clones was obtained after treatment with the child's serum. In addition, some synonymous mutations were determined in two clones of the HRSV-A samples. In conclusion, it is possible that minor sequences could be selected by host antibodies contributing to the HRSV evolutionary process, hampering the development of an effective vaccine, since we verify the same codon alteration in absence and presence of human sera in individual clones of BR-85 sample.


Assuntos
Anticorpos Antivirais/isolamento & purificação , Variação Genética , Infecções por Vírus Respiratório Sincicial/imunologia , Vírus Sincicial Respiratório Humano/genética , Vírus Sincicial Respiratório Humano/imunologia , Sequência de Bases/genética , Criança , Genes Virais , Humanos , Mães , Mutação , Líquido da Lavagem Nasal/virologia , Vírus Sincicial Respiratório Humano/isolamento & purificação , Ensaio de Placa Viral
15.
Int Forum Allergy Rhinol ; 5(3): 197-203, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25556759

RESUMO

BACKGROUND: Chronic rhinosinusitis (CRS) can be aggravated by viral upper respiratory infections. We aimed to investigate whether any specific human rhinovirus (HRV) serotype is more common in the mucosa of CRS patients, and to find any defining clinical characteristics, according to the various HRV serotypes. METHODS: A prospective case-control study was conducted to determine HRV serotypes in 111 CRS patients and 51 non-CRS controls. No participant had a history of upper respiratory infection over a 4-week period. Nasal lavage fluids and turbinate epithelial cells were collected prospectively. When HRV was detected with multiplex polymerase chain reaction (PCR), strains were further characterized by sequencing the VP4/VP2 region of the HRV genome. RESULTS: HRV was detected in 40 CRS subjects (36%) and 11 non-CRS controls (21%). The overall detection rates of HRV in CRS patients were higher than in non-CRS controls (p < 0.05). Of the 8 serotypes detected in CRS patients, 5 belonged to HRV-A and 3 belonged to HRV-B; HRV-C was not detected. In non-CRS controls, only HRV-A was identified, with only 2 serotypes detected (HRV-A13 and HRV-A16). HRV-B and C were not detected. CONCLUSION: The high prevalence of HRV in CRS patients was confirmed in our study. However, we were unable to determine whether certain HRV serotypes are more predominant in CRS patients than non-CRS controls. HRV-A13 was the most common serotype in both CRS patients and non-CRS controls. We could not find any differences in the clinical characteristics according to the HRV serotypes in CRS patients.


Assuntos
Líquido da Lavagem Nasal/virologia , Mucosa Nasal/virologia , Rinite/virologia , Rhinovirus/isolamento & purificação , Sinusite/virologia , Adulto , Estudos de Casos e Controles , Doença Crônica , Feminino , Humanos , Masculino , Estudos Prospectivos , Sorogrupo
16.
J Med Virol ; 87(2): 330-7, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25132248

RESUMO

Using a large data set (n = 811), the relationship between acute respiratory infection illness severity and inflammatory biomarkers was investigated to determine whether certain symptoms are correlated more closely than others with the inflammatory biomarkers, interleukin-8 (IL-8) and nasal neutrophils. Participants with community acquired acute respiratory infection underwent nasal lavage for IL-8 and neutrophil testing, in addition to multiplex polymerase chain reaction (PCR) methods for the detection and identification of respiratory viruses. Information about symptoms was obtained throughout the duration of the illness episode using the well-validated Wisconsin Upper Respiratory Symptom Survey (WURSS-21). Global symptom severity was calculated by the area under the curve (AUC) plotting duration versus WURSS total. Of the specimens tested, 56% were positively identified for one or more of nine different respiratory viruses. During acute respiratory infection illness, both IL-8 and neutrophils positively correlate with AUC (r(s) = 0.082, P = 0.022; r(s) = 0.080, P = 0.030). IL-8 and neutrophils correlate with nasal symptom severity: runny nose (r = 0.13, P = < 0.00001; r = 0.18, P = < 0.003), plugged nose (r = 0.045, P = 0.003; r = 0.14, P = 0.058), and sneezing (r = -0.02, P = < 0.0001; r = -0.0055, P = 0.31). Neutrophils correlate with some quality of life measures such as sleeping well (r = 0.15, P = 0.026). Thus, the study demonstrates that IL-8 and neutrophils are correlated with severity of nasal symptoms during acute respiratory infection. Further research is necessary to determine if the concentration of these or other biomarkers can predict the overall duration and severity of acute respiratory infection illness.


Assuntos
Biomarcadores/análise , Interleucina-8/análise , Neutrófilos/imunologia , Infecções Respiratórias/imunologia , Infecções Respiratórias/patologia , Índice de Gravidade de Doença , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Criança , Infecções Comunitárias Adquiridas/imunologia , Infecções Comunitárias Adquiridas/patologia , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Líquido da Lavagem Nasal/química , Líquido da Lavagem Nasal/citologia , Líquido da Lavagem Nasal/virologia , Reação em Cadeia da Polimerase , Vírus/genética , Vírus/isolamento & purificação , Wisconsin , Adulto Jovem
17.
Curr Opin Pediatr ; 27(1): 110-5, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25514574

RESUMO

PURPOSE OF REVIEW: Acute otitis media occurs as a complication of viral upper respiratory tract infection. Bacterial otopathogens and respiratory viruses interact and play important roles in acute otitis media development. A better understanding of viral and bacterial interactions may lead to innovative ways to lessen the burden of this common childhood disease. RECENT FINDINGS: There has been increasing evidence that acute otitis media occurs during upper respiratory infection, even in the absence of nasopharyngeal bacterial colonization. Among the types of viruses associated with acute otitis media, respiratory syncytial virus continues to be the most commonly detected. It is still unclear whether viral load plays an important role in acute otitis media development, but symptomatic upper respiratory tract infection (as opposed to asymptomatic viral infection) is crucial. Widespread use of bacterial and viral vaccines in young children, including pneumococcal conjugate and influenza vaccines, has led to the reduction in otitis media-related healthcare use between 2001 and 2011. There has been no new vaccine against respiratory viruses other than influenza. SUMMARY: Progress has been made toward the reduction of the burden of acute otitis media in the last decade. Success in reducing acute otitis media incidence will rely mainly on prevention of nasopharyngeal otopathogen colonization, as well as reduction in the incidence of viral upper respiratory tract infection.


Assuntos
Líquido da Lavagem Nasal/microbiologia , Doenças Nasofaríngeas/microbiologia , Otite Média/microbiologia , Infecções Respiratórias/microbiologia , Viroses/microbiologia , Criança , Pré-Escolar , Humanos , Líquido da Lavagem Nasal/virologia , Doenças Nasofaríngeas/fisiopatologia , Otite Média/fisiopatologia , Otite Média/virologia , Prevalência , Infecções Respiratórias/fisiopatologia , Viroses/fisiopatologia , Viroses/virologia
18.
Mem Inst Oswaldo Cruz ; 109(2): 229-35, 2014 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-24714967

RESUMO

During the influenza pandemic of 2009, the A(H1N1)pdm09, A/H3N2 seasonal and influenza B viruses were observed to be co-circulating with other respiratory viruses. To observe the epidemiological pattern of the influenza virus between May 2009-August 2011, 467 nasopharyngeal aspirates were collected from children less than five years of age in the city of Salvador. In addition, data on weather conditions were obtained. Indirect immunofluorescence, real-time transcription reverse polymerase chain reaction (RT-PCR), and sequencing assays were performed for influenza virus detection. Of all 467 samples, 34 (7%) specimens were positive for influenza A and of these, viral characterisation identified Flu A/H3N2 in 25/34 (74%) and A(H1N1)pdm09 in 9/34 (26%). Influenza B accounted for a small proportion (0.8%) and the other respiratory viruses for 27.2% (127/467). No deaths were registered and no pattern of seasonality or expected climatic conditions could be established. These observations are important for predicting the evolution of epidemics and in implementing future anti-pandemic measures.


Assuntos
Vírus da Influenza A Subtipo H1N1/isolamento & purificação , Vírus da Influenza A Subtipo H3N2/isolamento & purificação , Vírus da Influenza B/isolamento & purificação , Influenza Humana/epidemiologia , Estações do Ano , Tempo (Meteorologia) , Adenoviridae/isolamento & purificação , Brasil/epidemiologia , Pré-Escolar , Processos Climáticos , Coinfecção , Técnica Indireta de Fluorescência para Anticorpo , Humanos , Lactente , Recém-Nascido , Vírus da Influenza A Subtipo H1N1/fisiologia , Vírus da Influenza A Subtipo H3N2/fisiologia , Vírus da Influenza B/fisiologia , Influenza Humana/virologia , Líquido da Lavagem Nasal/virologia , Pandemias , Chuva/virologia , Vírus Sinciciais Respiratórios/isolamento & purificação , Respirovirus/isolamento & purificação , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Análise de Sequência , Luz Solar , Carga Viral
19.
Mem. Inst. Oswaldo Cruz ; 109(2): 229-235, abr. 2014. tab, graf
Artigo em Inglês | LILACS | ID: lil-705817

RESUMO

During the influenza pandemic of 2009, the A(H1N1)pdm09, A/H3N2 seasonal and influenza B viruses were observed to be co-circulating with other respiratory viruses. To observe the epidemiological pattern of the influenza virus between May 2009-August 2011, 467 nasopharyngeal aspirates were collected from children less than five years of age in the city of Salvador. In addition, data on weather conditions were obtained. Indirect immunofluorescence, real-time transcription reverse polymerase chain reaction (RT-PCR), and sequencing assays were performed for influenza virus detection. Of all 467 samples, 34 (7%) specimens were positive for influenza A and of these, viral characterisation identified Flu A/H3N2 in 25/34 (74%) and A(H1N1)pdm09 in 9/34 (26%). Influenza B accounted for a small proportion (0.8%) and the other respiratory viruses for 27.2% (127/467). No deaths were registered and no pattern of seasonality or expected climatic conditions could be established. These observations are important for predicting the evolution of epidemics and in implementing future anti-pandemic measures.


Assuntos
Pré-Escolar , Humanos , Lactente , Recém-Nascido , Vírus da Influenza A Subtipo H1N1/isolamento & purificação , /isolamento & purificação , Vírus da Influenza B/isolamento & purificação , Influenza Humana/epidemiologia , Estações do Ano , Tempo (Meteorologia) , Adenoviridae/isolamento & purificação , Brasil/epidemiologia , Processos Climáticos , Coinfecção , Técnica Indireta de Fluorescência para Anticorpo , Vírus da Influenza A Subtipo H1N1/fisiologia , /fisiologia , Vírus da Influenza B/fisiologia , Influenza Humana/virologia , Líquido da Lavagem Nasal/virologia , Pandemias , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Chuva/virologia , Vírus Sinciciais Respiratórios/isolamento & purificação , Respirovirus/isolamento & purificação , Análise de Sequência , Luz Solar , Carga Viral
20.
Am J Respir Crit Care Med ; 189(5): 532-9, 2014 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-24471509

RESUMO

RATIONALE: Most virus-induced attacks of asthma are caused by rhinoviruses (RVs). OBJECTIVES: To determine whether people with asthma are susceptible to an increased viral load during RV infection. METHODS: Seventy-four children (4-18 yr old) were enrolled; 28 with wheezing, 32 with acute rhinitis, and 14 without respiratory tract symptoms. Nasal washes were evaluated using quantitative polymerase chain reaction for RV to judge viral load along with gene sequencing to identify strains of RV. Soluble intercellular adhesion molecule-1, IFN-λ1, and eosinophil cationic protein in nasal washes, along with blood eosinophil counts and total and allergen-specific IgE in sera, were also evaluated. Similar assessments were done in 24 young adults (16 with asthma, 8 without) who participated in an experimental challenge with RV (serotype 16). MEASUREMENTS AND MAIN RESULTS: Fifty-seven percent of wheezing children and 56% with acute rhinitis had nasal washes testing positive for RV. The geometric mean of viral loads by quantitative polymerase chain reaction in washes from wheezing children was 2.8-fold lower, but did not differ significantly from children with rhinitis (7,718 and 21,612 copies of viral RNA per microliter nasal wash, respectively; P = 0.48). The odds for wheezing were increased if children who tested positive for RV were sensitized to one or more allergens (odds ratio, 3.9; P = 0.02). Similarly, neither peak nor cumulative viral loads differed significantly in washes from adults with asthma compared with those without asthma during the experimental RV challenge. CONCLUSIONS: During acute symptoms, children infected with RV enrolled for wheezing or acute rhinitis had similar viral loads in their nasal washes, as did adults with and without asthma infected with RV-16 experimentally.


Assuntos
Asma/virologia , Infecções por Picornaviridae/virologia , Sons Respiratórios/etiologia , Rinite/virologia , Rhinovirus/isolamento & purificação , Carga Viral , Doença Aguda , Adolescente , Asma/sangue , Asma/complicações , Biomarcadores/sangue , Estudos de Casos e Controles , Criança , Pré-Escolar , Estudos Transversais , Progressão da Doença , Proteína Catiônica de Eosinófilo/sangue , Eosinófilos/metabolismo , Feminino , Humanos , Imunoglobulina E/sangue , Molécula 1 de Adesão Intercelular/sangue , Interferons , Interleucinas/sangue , Contagem de Leucócitos , Modelos Logísticos , Masculino , Líquido da Lavagem Nasal/virologia , Razão de Chances , Infecções por Picornaviridae/sangue , Infecções por Picornaviridae/complicações , Infecções por Picornaviridae/diagnóstico , Reação em Cadeia da Polimerase , RNA Viral/análise , Sons Respiratórios/fisiologia , Rinite/sangue , Rhinovirus/genética , Adulto Jovem
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