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1.
Science ; 383(6689): eadk5466, 2024 Mar 22.
Artigo em Inglês | MEDLINE | ID: mdl-38513029

RESUMO

In many eukaryotes, genetic sex determination is not governed by XX/XY or ZW/ZZ systems but by a specialized region on the poorly studied U (female) or V (male) sex chromosomes. Previous studies have hinted at the existence of a dominant male-sex factor on the V chromosome in brown algae, a group of multicellular eukaryotes distantly related to animals and plants. The nature of this factor has remained elusive. Here, we demonstrate that an HMG-box gene acts as the male-determining factor in brown algae, mirroring the role HMG-box genes play in sex determination in animals. Over a billion-year evolutionary timeline, these lineages have independently co-opted the HMG box for male determination, representing a paradigm for evolution's ability to recurrently use the same genetic "toolkit" to accomplish similar tasks.


Assuntos
Algas Comestíveis , Proteínas HMGB , Laminaria , Phaeophyceae , Cromossomos Sexuais , Processos de Determinação Sexual , Animais , Evolução Biológica , Phaeophyceae/genética , Cromossomos Sexuais/genética , Processos de Determinação Sexual/genética , Cromossomo Y , Proteínas HMGB/genética , Cromossomos de Plantas/genética , Domínios HMG-Box , Algas Comestíveis/genética , Laminaria/genética , Pólen/genética
2.
Int J Mol Sci ; 24(19)2023 Oct 02.
Artigo em Inglês | MEDLINE | ID: mdl-37834273

RESUMO

Iodide is accumulated by the brown alga Saccharina japonica at a high concentration and has been proven to be an inorganic antioxidant that plays an important role in oxidative metabolism. Vanadium-dependent bromoperoxidases (vBPOs) and iodoperoxidases (vIPOs), which catalyze the oxidation of iodide, are essential for iodine accumulation and metabolism. Heavy metal pollutant cadmium (Cd) from anthropogenic activities can cause damage to algae mainly by producing oxidative stress. Here, the effects of iodine pretreatment on the stress of S. japonica caused by cadmium were analyzed. The growth experiment showed that iodine pretreatment could reduce the damage of low concentration cadmium on S. japonica young thalli. At the transcriptomic level, gene ontology (GO) enrichment analysis confirmed that cadmium stress could cause a peroxidation reaction in S. japonica. However, the most significant GO term was "photosystem I" in the series with iodine pretreatment. Weighted gene co-expression network analysis (WGCNA) indicated that iodine pretreatment alleviated cadmium stress responses of S. japonica by affecting the photosynthesis process. Analysis of the differentially expressed genes (DEGs) showed that five enzymes from the vBPO family and 13 enzymes from the vIPO family might play crucial roles in this process.


Assuntos
Iodo , Laminaria , Phaeophyceae , Transcriptoma , Cádmio/toxicidade , Cádmio/metabolismo , Laminaria/genética , Iodo/metabolismo , Iodetos/metabolismo , Phaeophyceae/metabolismo
3.
Microbiome ; 11(1): 126, 2023 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-37264413

RESUMO

BACKGROUND: Macroalgal epiphytic microbial communities constitute a rich resource for novel enzymes and compounds, but studies so far largely focused on tag-based microbial diversity analyses or limited metagenome sequencing of single macroalgal species. RESULTS: We sampled epiphytic bacteria from specimens of Ulva sp. (green algae), Saccharina sp. (brown algae), Grateloupia sp. and Gelidium sp. (both red algae) together with seawater and sediment controls from a coastal reef in Weihai, China, during all seasons. Using 16S rRNA amplicon sequencing, we identified 14 core genera (consistently present on all macroalgae), and 14 dominant genera (consistently present on three of the macroalgae). Core genera represented ~ 0.7% of all genera, yet accounted for on average 51.1% of the bacterial abundances. Plate cultivation from all samples yielded 5,527 strains (macroalgae: 4,426) representing 1,235 species (685 potentially novel). Sequencing of selected strains yielded 820 non-redundant draft genomes (506 potentially novel), and sequencing of 23 sampled metagenomes yielded 1,619 metagenome-assembled genomes (MAGs), representing further 1,183 non-redundant genomes. 230 isolates and 153 genomes were obtained from the 28 core/dominant genera. We analyzed the genomic potential of phycosphere bacteria to degrade algal polysaccharides and to produce bioactive secondary metabolites. We predicted 4,451 polysaccharide utilization loci (PULs) and 8,810 biosynthetic gene clusters (BGCs). These were particularly prevalent in core/dominant genera. CONCLUSIONS: Our metabolic annotations and analyses of MAGs and genomes provide new insights into novel species of phycosphere bacteria and their ecological niches for an improved understanding of the macroalgal phycosphere microbiome. Video Abstract.


Assuntos
Laminaria , Microbiota , Rodófitas , Alga Marinha , Ulva , Alga Marinha/microbiologia , Ulva/genética , Ulva/microbiologia , Laminaria/genética , RNA Ribossômico 16S/genética , Bactérias , Rodófitas/genética , Microbiota/genética
4.
BMC Plant Biol ; 23(1): 78, 2023 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-36740685

RESUMO

BACKGROUND: Brown macroalgae dominate temperate coastal ecosystems, and their productivity is typically limited by nitrate availability. As an economically important kelp, Saccharina japonica is the most productive farmed seaweed and needs to be supplemented with sufficient nitrate throughout the cultivation process. However, molecular characterization of genes involved in nitrogen assimilation has not been conducted in brown macroalgae. RESULTS: Here, we described the identification of the nitrate reductase (NR) gene from S. japonica (SjNR). Using two different cloning methods for SjNR, i.e. rapid amplification of cDNA ends (RACE) and cDNA cloning alone, a single fragment was obtained respectively. According to results of sequence analysis between these two fragments, the tentative coding sequence in two clones, SjNR-L and SjNR-S, were suggested to represent two transcripts of the single copy SjNR, and the ATG of SjNR-S was located inside the third exon of SjNR-L. In the 5' upstream sequence of each transcript, promoter core elements, response elements, especially multiple N response elements which occurred in microalgal NR, were all predicted. Further sequence analysis revealed that both transcripts encoded all five domains conserved in eukaryotic plant NRs. RT-qPCR results showed that the transcription level of SjNR in juvenile sporophytes could be significantly induced by nitrate and inhibited by ammonium, which was in line with plant NRs. The recombinant SjNR-L and SjNR-S were all proved to have NR activity, suggesting that the single-copy gene SjNR might be regulated on transcription level based on alternative promoters and multiple transcriptional start sites. Moreover, both NADH and NADPH were found to be able to act as electron donors for SjNR alone, which is the first confirmation that brown algal NR has a NAD(P)H-bispecific form. CONCLUSION: These results will provide a scientific basis for understanding the N demand of kelp in various stages of cultivation and evaluating the environmental remediation potential of kelp in eutrophic sea areas.


Assuntos
Laminaria , Nitrato Redutase , Alga Marinha , Clonagem Molecular , DNA Complementar/genética , Ecossistema , Laminaria/enzimologia , Laminaria/genética , Nitrato Redutase/genética , Nitratos , Alga Marinha/enzimologia , Alga Marinha/genética
5.
Int J Mol Sci ; 22(18)2021 Sep 13.
Artigo em Inglês | MEDLINE | ID: mdl-34576045

RESUMO

Cytosine methylation plays vital roles in regulating gene expression and plant development. However, the function of DNA methylation in the development of macroalgae remains unclear. Through the genome-wide bisulfite sequencing of cytosine methylation in holdfast, stipe and blade, we obtained the complete 5-mC methylation landscape of Saccharina japonica sporophyte. Our results revealed that the total DNA methylation level of sporophyte was less than 0.9%, and the content of CHH contexts was dominant. Moreover, the distribution of CHH methylation within the genes exhibited exon-enriched characteristics. Profiling of DNA methylation in three parts revealed the diverse methylation pattern of sporophyte development. These pivotal DMRs were involved in cell motility, cell cycle and cell wall/membrane biogenesis. In comparison with stipe and blade, hypermethylation of mannuronate C5-epimerase in holdfast decreased the transcript abundance, which affected the synthesis of alginate, the key component of cell walls. Additionally, 5-mC modification participated in the regulation of blade and holdfast development by the glutamate content respectively via glutamine synthetase and amidophosphoribosyl transferase, which may act as the epigenetic regulation signal. Overall, our study revealed the global methylation characteristics of the well-defined holdfast, stipe and blade, and provided evidence for epigenetic regulation of sporophyte development in brown macroalgae.


Assuntos
Metilação de DNA/genética , Epigênese Genética , Genoma de Planta/genética , Laminaria/genética , Amidofosforribosiltransferase/genética , Mapeamento Cromossômico , Citosina/metabolismo , Regulação da Expressão Gênica de Plantas/genética , Glutamato-Amônia Ligase/genética , Ácido Glutâmico/metabolismo , Laminaria/crescimento & desenvolvimento , Desenvolvimento Vegetal/genética
6.
Mol Ecol ; 30(8): 1806-1822, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33629449

RESUMO

The development of population genomic approaches in non-model species allows for renewed studies of the impact of reproductive systems and genetic drift on population diversity. Here, we investigate the genomic signatures of partial clonality in the deep water kelp Laminaria rodriguezii, known to reproduce by both sexual and asexual means. We compared these results with the species Laminaria digitata, a closely related species that differs by different traits, in particular its reproductive mode (no clonal reproduction). We analysed genome-wide variation with dd-RAD sequencing using 4,077 SNPs in L. rodriguezii and 7,364 SNPs in L. digitata. As predicted for partially clonal populations, we show that the distribution of FIS within populations of L. rodriguezii is shifted toward negative values, with a high number of loci showing heterozygote excess. This finding is the opposite of what we observed within sexual populations of L. digitata, characterized by a generalized deficit in heterozygotes. Furthermore, we observed distinct distributions of FIS among populations of L. rodriguezii, which is congruent with the predictions of theoretical models for different levels of clonality and genetic drift. These findings highlight that the empirical distribution of FIS is a promising feature for the genomic study of asexuality in natural populations. Our results also show that the populations of L. rodriguezii analysed here are genetically differentiated and probably isolated. Our study provides a conceptual framework to investigate partial clonality on the basis of RAD-sequencing SNPs. These results could be obtained without any reference genome, and are therefore of interest for various non-model species.


Assuntos
Kelp , Laminaria , Deriva Genética , Genômica , Kelp/genética , Laminaria/genética , Água
7.
Int J Mol Sci ; 21(1)2020 Jan 02.
Artigo em Inglês | MEDLINE | ID: mdl-31906436

RESUMO

CRY-DASH, a new cryptochrome blue light receptor, can repair damaged DNA and regulate secondary metabolism and development of fungus. However, its role in regulation during the growth of Saccharina japonica is still unclear. After cloning the full-length of CRY-DASH from S. japonica (sjCRY-DASH), we deduced that its open reading frame was 1779 bp long and encoded 592 amino acids. sjCRY-DASH transcription was rapidly upregulated within 30 min in response to blue light and exhibited 24 h periodicity with different photoperiods. Moreover, sjCRY-DASH maintained the same periodicity in suitable growth temperature, suggesting a close relationship between this periodicity and circadian rhythm regulation. Novel-m3234-5p, which was targeted to sjCRY-DASH, decreased with increasing sjCRY-DASH transcription, acting as a negative modulator of sjCRY-DASH. Six long non-coding RNAs classified as long intergenic non-coding RNAs (lincRNAs) exhibited co-expression with sjCRY-DASH. A miRNA sjCRY DASH lincRNA network was consequently identified. By predicting the endogenous competing mRNAs of novel-m3234-5p, we found that sjCRY-DASH indirectly participated in the regulation of DNA damage repair, protein synthesis and processing, and actin transport. In conclusion, our results revealed that non-coding RNAs participate in the regulation of sjCRY-DASH, which played vital roles in the growth and early development of S. japonica.


Assuntos
Criptocromos/metabolismo , Laminaria/genética , Laminaria/metabolismo , RNA Longo não Codificante/metabolismo , Ritmo Circadiano/genética , Ritmo Circadiano/efeitos da radiação , Análise por Conglomerados , Criptocromos/genética , Reparo do DNA/genética , Regulação da Expressão Gênica/genética , Regulação da Expressão Gênica/efeitos da radiação , Laminaria/crescimento & desenvolvimento , Laminaria/efeitos da radiação , Luz , Fotoperíodo , RNA Longo não Codificante/genética , RNA Mensageiro/metabolismo , Temperatura
8.
BMC Genomics ; 20(1): 975, 2019 Dec 12.
Artigo em Inglês | MEDLINE | ID: mdl-31830918

RESUMO

BACKGROUND: Alginate is an important cell wall component and mannitol is a soluble storage carbon substance in the brown seaweed Saccharina japonica. Their contents vary with kelp developmental periods and harvesting time. Alginate and mannitol regulatory networks and molecular mechanisms are largely unknown. RESULTS: With WGCNA and trend analysis of 20,940 known genes and 4264 new genes produced from transcriptome sequencing of 30 kelp samples from different stages and tissues, we deduced that ribosomal proteins, light harvesting complex proteins and "imm upregulated 3" gene family are closely associated with the meristematic growth and kelp maturity. Moreover, 134 and 6 genes directly involved in the alginate and mannitol metabolism were identified, respectively. Mannose-6-phosphate isomerase (MPI2), phosphomannomutase (PMM1), GDP-mannose 6-dehydrogenase (GMD3) and mannuronate C5-epimerase (MC5E70 and MC5E122) are closely related with the high content of alginate in the distal blade. Mannitol accumulation in the basal blade might be ascribed to high expression of mannitol-1-phosphate dehydrogenase (M1PDH1) and mannitol-1-phosphatase (M1Pase) (in biosynthesis direction) and low expression of mannitol-2-dehydrogenase (M2DH) and Fructokinase (FK) (in degradation direction). Oxidative phosphorylation and photosynthesis provide ATP and NADH for mannitol metabolism whereas glycosylated cycle and tricarboxylic acid (TCA) cycle produce GTP for alginate biosynthesis. RNA/protein synthesis and transportation might affect alginate complex polymerization and secretion processes. Cryptochrome (CRY-DASH), xanthophyll cycle, photosynthesis and carbon fixation influence the production of intermediate metabolite of fructose-6-phosphate, contributing to high content of mannitol in the basal blade. CONCLUSIONS: The network of co-responsive DNA synthesis, repair and proteolysis are presumed to be involved in alginate polymerization and secretion, while upstream light-responsive reactions are important for mannitol accumulation in meristem of kelp. Our transcriptome analysis provides new insights into the transcriptional regulatory networks underlying the biosynthesis of alginate and mannitol during S. japonica developments.


Assuntos
Perfilação da Expressão Gênica/métodos , Redes Reguladoras de Genes , Laminaria/crescimento & desenvolvimento , Alga Marinha/crescimento & desenvolvimento , Proteínas de Algas/genética , Alginatos/metabolismo , Regulação da Expressão Gênica no Desenvolvimento , Sequenciamento de Nucleotídeos em Larga Escala , Laminaria/genética , Manitol/metabolismo , Meristema/genética , Meristema/crescimento & desenvolvimento , Fosforilação Oxidativa , Alga Marinha/genética , Análise de Sequência de RNA
9.
Int J Mol Sci ; 20(10)2019 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-31096691

RESUMO

Blue light (BL) plays an important role in regulation of the growth and development of aquatic plants and land plants. Aureochrome (AUREO), the recent BL photoreceptor identified in photosynthetic stramenopile algae, is involved in the photomorphogenesis and early development of Saccharina japonica porophytes (kelp). However the factors that interact with the SjAUREO under BL conditions specifically are not clear. Here in our study, three high quality cDNA libraries with CFU over 5 × 106 and a recombination rate of 100% were constructed respectively through white light (WL), BL and darkness (DK) treatments to the juvenile sporophytes. Based on the constructed cDNA libraries, the interactors of SjAUREO were screened and analyzed. There are eighty-four genes encoding the sixteen predicted proteins from the BL cDNA library, sixty-eight genes encoding eighteen predicted proteins from the DK cDNA library, and seventy-four genes encoding nineteen proteins from the WL cDNA library. All the predicted proteins are presumed to interact with SjAUREO when co-expressed with SjAUREO seperately. The 40S ribosomal protein S6 (RPS6), which only exists in the BL treated cDNA library except for two other libraries, and which is essential for cell proliferation and is involved in cell cycle progression, was selected for detailed analysis. We showed that its transcription was up-regulated by BL, and was highly transcribed in the basal blade (meristem region) of juvenile sporophytes but less in the distal part. Taken together, our results indicated that RPS6 was highly involved in BL-mediated kelp cellular division and photomorphogenesis by interacting with SjAUREO.


Assuntos
Laminaria/metabolismo , Laminaria/efeitos da radiação , Luz , Proteína S6 Ribossômica/metabolismo , Proteína S6 Ribossômica/efeitos da radiação , Proteínas Ribossômicas/metabolismo , Proteínas Ribossômicas/efeitos da radiação , Proliferação de Células , Perfilação da Expressão Gênica , Regulação da Expressão Gênica no Desenvolvimento/genética , Regulação da Expressão Gênica no Desenvolvimento/efeitos da radiação , Regulação da Expressão Gênica de Plantas/efeitos da radiação , Biblioteca Gênica , Genes de Plantas/genética , Laminaria/genética , Células Fotorreceptoras/metabolismo , Células Fotorreceptoras/efeitos da radiação , Fotossíntese , Proteínas de Plantas/genética , Proteínas Ribossômicas/genética , Regulação para Cima/efeitos da radiação
10.
J Phycol ; 53(4): 778-789, 2017 08.
Artigo em Inglês | MEDLINE | ID: mdl-28434206

RESUMO

The genus Laminaria has a wide distribution range compared with other kelp genera because it is found in both the North and the South Atlantic, on both sides of the North Pacific, as well as in the Mediterranean. Hypotheses behind this biogeographical pattern have been discussed by several authors but have not yet been fully evaluated with time-calibrated phylogenies. Based on the analysis of four molecular markers (ITS2, rbcL, atp8 and trnWI), our goal was to reassess the Laminaria species diversity in South Africa, assess its relationship with the other species distributed in the South Atlantic and reconstruct the historical biogeography of the genus. Our results confirm the occurrence of a single species, L. pallida, in southern Africa, and its sister relationship with the North Atlantic L. ochroleuca. Both species belonged to a clade containing the other South Atlantic species: L. abyssalis from Brazil, and the Mediterranean L. rodriguezii. Our time-calibrated phylogenies suggest that Laminaria originated in the northern Pacific around 25 mya, followed by at least two migration events through the Bering Strait after its opening (~5.32 mya). Today, the first is represented by L. solidungula in the Arctic, while the second gave rise to the rest of the Atlantic species. The colonization of the North Atlantic was followed by a gradual colonization southward along the west coast of Europe, into the Mediterranean (~2.07 mya) and two recent, but disconnected, migrations (~1.34 and 0.87 mya) across the equator, giving rise to L. abyssalis in Brazil and L. pallida in southern Africa, respectively.


Assuntos
Biodiversidade , Evolução Biológica , Laminaria/classificação , Laminaria/fisiologia , Filogenia , Proteínas de Algas/genética , Proteínas de Algas/metabolismo , Oceano Atlântico , Laminaria/genética , Filogeografia , Análise de Sequência de DNA
11.
J Phycol ; 53(1): 235-240, 2017 02.
Artigo em Inglês | MEDLINE | ID: mdl-27885670

RESUMO

Telomeres generally consist of short repeats of minisatellite DNA sequences and are useful in chromosome identification and karyotype analysis. To date, telomeres have not been characterized in the economically important brown seaweed Saccharina japonica, thus its full cytogenetic research and genetic breeding potential has not been realized. Herein, the tentative sequence of telomeres in S. japonica was identified by PCR amplification with primers designed based on the Arabidopsis-type telomere sequence (TTTAGGG)n , which was chosen out of three possible telomeric repeat DNA sequences typically present in plants and algae. After PCR optimization and cloning, sequence analysis of the amplified products from S. japonica genomic DNA showed that they were composed of repeat units, (TTTAGGG)n , in which the repeat number ranged from 15 to 63 (n = 46). This type of repeat sequence was verified by a Southern blot assay with the Arabidopsis-type telomere sequence as a probe. The digestion of S. japonica genomic DNA with the exonuclease Bal31 illustrated that the target sequence corresponding to the Arabidopsis-type telomere sequence was susceptible to Bal31 digestion, suggesting that the repeat sequence was likely located at the outermost ends of the kelp chromosomes. Fluorescence in situ hybridizations with the aforementioned probe provided the initial cytogenetic evidence that the hybridization signals were principally localized at both ends of S. japonica chromosomes. This study indicates that the telomeric repeat of the kelp chromosomes is (TTTAGGG)n which differs from the previously reported (TTAGGG)n sequence in Ectocarpus siliculosus through genome sequencing, thereby suggesting distinct telomeres in brown seaweeds.


Assuntos
Phaeophyceae/genética , Sequências Repetitivas de Ácido Nucleico , Telômero , Southern Blotting , Hibridização in Situ Fluorescente , Laminaria/genética
12.
Mitochondrial DNA A DNA Mapp Seq Anal ; 27(6): 4592-4594, 2016 11.
Artigo em Inglês | MEDLINE | ID: mdl-27159726

RESUMO

The kelp Kjellmaniella crassifolia is one of the most important economic resources, which is widely distributed in Japan and has now been introduced to coastal areas in China's Shandong Province for cultivation. In this study, we present the complete mitochondrial genome of K. crassifolia. The genome is characterized as a circular molecule of 37,627 bp in length with an overall A + T content of 64.81%. The mitogenome contains three ribosomal RNA genes (rRNA), 24 transfer RNA genes (tRNA), 35 protein-coding genes, and three conserved open reading frames (ORFs). Most genes are encoded on the H-strand and 11 pairs of overlapping genes are identified with the overlap size from 1 to 16 bp. The gene content and organization of mitogenome for K. crassifolia is identical to those for Saccharina, Laminaria, Undaria, and Costaria. Phylogenetic analysis based on 35 mitochondrial protein-coding genes clearly proves that Laminaria and Saccharina are distinct genus identified by Kjellmaniella. The present study provides new molecular data for further studies on evolutionary relationship within Phaeophyceae.


Assuntos
Genoma Mitocondrial , Laminaria/genética , Phaeophyceae/genética , Composição de Bases , DNA Mitocondrial/química , DNA Mitocondrial/isolamento & purificação , DNA Mitocondrial/metabolismo , Fases de Leitura Aberta/genética , Phaeophyceae/classificação , Filogenia , RNA Ribossômico/química , RNA Ribossômico/genética , RNA de Transferência/química , RNA de Transferência/genética , Análise de Sequência de DNA
13.
PLoS One ; 10(10): e0140535, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26496392

RESUMO

Sex discriminating genetic markers are commonly used to facilitate breeding programs in economically and ecologically important animal and plant species. However, despite their considerable economic and ecological value, the development of sex markers for kelp species has been very limited. In this study, we used the recently described sequence of the sex determining region (SDR) of the brown algal model Ectocarpus to develop novel DNA-based sex-markers for three commercially relevant kelps: Laminaria digitata, Undaria pinnatifida and Macrocystis pyrifera. Markers were designed within nine protein coding genes of Ectocarpus male and female (U/V) sex chromosomes and tested on gametophytes of the three kelp species. Seven primer pairs corresponding to three loci in the Ectocarpus SDR amplified sex-specific bands in the three kelp species, yielding at least one male and one female marker for each species. Our work has generated the first male sex-specific markers for L. digitata and U. pinnatifida, as well as the first sex markers developed for the genus Macrocystis. The markers and methodology presented here will not only facilitate seaweed breeding programs but also represent useful tools for population and demography studies and provide a means to investigate the evolution of sex determination across this largely understudied eukaryotic group.


Assuntos
Marcadores Genéticos/genética , Células Germinativas Vegetais/metabolismo , Kelp/genética , Reação em Cadeia da Polimerase/métodos , Mapeamento Cromossômico , Cromossomos de Plantas/genética , DNA de Algas/genética , Eletroforese em Gel de Ágar , Kelp/classificação , Laminaria/genética , Macrocystis/genética , Reprodução/genética , Especificidade da Espécie , Undaria/genética
14.
PLoS One ; 10(5): e0128588, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26010152

RESUMO

Saccharina (Laminaria) is one of the most important economic seaweeds. Previously, four genetic linkage maps of Saccharina have been constructed and five QTLs have been identified. However, they were not enough for its breeding. In this work, Saccharina longissima (♀) and Saccharina japonica (♂), which showed obvious differences in morphology and genetics, were applied in hybridization to yield the F2 mapping population with 102 individuals. Using these 102 F2 hybrids, the genetic linkage map of Saccharina was constructed by MapMaker software based on 37 amplified fragment length polymorphisms (AFLPs), 22 sequence-related amplified polymorphisms (SRAPs) and 139 simple sequence repeats (SSRs) markers. Meanwhile, QTL analysis was performed for six economic traits. The linkage map constructed in this research consisted of 422 marker loci (137 AFLPs, 57 SRAPs and 228 SSRs), which formed 45 linkage groups (LGs) with an average marker space of 7.92 cM; they spanned a total length of 2233.1 cM, covering the whole estimated genome size. A total of 29 QTLs were identified for six economic traits, which explained 1.06 to 64.00% of phenotypic variation, including three QTLs for frond length (FL) and raw weight (RW), five QTLs for frond width (FW), two QTLs for frond fascia width (FFW) and frond thickness (FT), and fourteen QTLs for base shape (BS). The results of this research will improve the breeding efficiency and be beneficial for marker-assisted selection (MAS) schemes in Saccharina breeding.


Assuntos
Mapeamento Cromossômico/métodos , Laminaria/genética , Locos de Características Quantitativas , Quimera/genética , Marcadores Genéticos/genética , Genoma , Laminaria/fisiologia , Fenótipo
15.
Mitochondrial DNA ; 26(6): 919-20, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-24409887

RESUMO

Costaria costata, with great commercial and industrial value, typically grows in low intertidal and subtidal retgions in East Asia. The complete mitochondrial genome of C. costata is determined as circular-mapping and AT-rich (65%). The 37,461 bp mitochondrial genome consists of 25 tRNAs, 38 genes (including ORFs) and 3 ribosome genes. The gene arrangement and component are identical to those of Laminaria mitochondrial genomes, which show highly conservative evolution in mitochondrial genomes within the Laminariales. Moreover, the C. costata mitogenome makes full use of nucleotide and genetic information by large amounts of gene overlappings for better adapting the evolution of small genomes.


Assuntos
Genoma Mitocondrial , Laminaria/genética , Análise de Sequência de DNA/métodos , Animais , Composição de Bases , Evolução Molecular , Ordem dos Genes
16.
New Phytol ; 204(3): 567-576, 2014 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-25041157

RESUMO

Brown algae are one of the few eukaryotic lineages that have evolved complex multicellularity, together with Opisthokonts (animals, fungi) and Plantae (land plants, green and red algae). In these three lineages, biotic stresses induce similar local defense reactions. Animals and land plants also feature a systemic immune response, protecting the whole organism after an attack on one of its parts. However, the occurrence of systemic defenses has never been investigated in brown algae. We elicited selected parts of the kelp Laminaria digitata and monitored distant, nonchallenged areas of the same individual for subsequent defense reactions. A systemic reaction was detected following elicitation on a distant area, including an oxidative response, an increase in haloperoxidase activities and a stronger resistance against herbivory. Based on experiments with pharmacological inhibitors, the liberation of free fatty acids is proposed to play a key role in systemic signaling, reminiscent of what is known in land plants. This study is the first report, outside the phyla of Opisthokonts and Plantae, of an intraorganism communication leading to defense reactions. These findings indicate that systemic immunity emerged independently at least three times, as a consequence of convergent evolution in multicellular eukaryotic lineages.


Assuntos
Evolução Biológica , Regulação da Expressão Gênica de Plantas/fisiologia , Imunidade Inata/fisiologia , Laminaria/imunologia , Laminaria/metabolismo , Animais , Comportamento Alimentar , Peróxido de Hidrogênio , Laminaria/enzimologia , Laminaria/genética , Moluscos/fisiologia , Folhas de Planta
17.
PLoS One ; 9(7): e102518, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-25019953

RESUMO

Adaptation to marginal habitats at species range-limits has often been associated with parthenogenetic reproduction in terrestrial animals and plants. Laboratory observations have shown that brown algae exhibit a high propensity for parthenogenesis by various mechanisms. The kelp Laminaria digitata is an important component of the ecosystem in Northern European rocky intertidal habitats. We studied four L. digitata populations for the effects of marginality on genetic diversity and sexual reproduction. Two populations were marginal: One (Locquirec, in Northern Brittany) was well within the geographic range, but was genetically isolated from other populations by large stretches of sandy beaches. Another population was at the range limits of the species (Quiberon, in Southern Brittany) and was exposed to much higher seasonal temperature changes. Microsatellite analyses confirmed that these populations showed decreased genetic and allelic diversity, consistent with marginality and genetic isolation. Sporophytes from both marginal populations showed greatly diminished spore-production compared to central populations, but only the southern-limit population (Quiberon) showed a high propensity for producing unreduced (2N) spores. Unreduced 2N spores formed phenotypically normal gametophytes with nuclear area consistent with ≥2N DNA contents, and microsatellite studies suggested these were produced at least in part by automixis. However, despite this being the dominant path of spore production in Quiberon sporophyte individuals, the genetic evidence indicated the population was maintained mostly by sexual reproduction. Thus, although spore production and development showed the expected tendency of geographical parthenogenesis in marginal populations, this appeared to be a consequence of maladaptation, rather than an adaptation to, life in a marginal habitat.


Assuntos
Variação Genética , Laminaria/genética , Ecossistema , Geografia , Laminaria/fisiologia , Repetições de Microssatélites , Ploidias , Reprodução/fisiologia , Isolamento Reprodutivo , Água do Mar , Temperatura
18.
Biomed Res Int ; 2013: 193689, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24350250

RESUMO

Herein the extraction method of fucoidan from Laminaria japonica is reported. Firstly, chitosan, chitosan-N-2-hydroxypropyl trimethyl ammonium chloride (HACC), and hexadecyltrimethylammonium bromide (CPAB) were used to extract the fucoidan. The results showed that chitosan was the optimal extractant compared with the other two extractants. After extraction, different aqueous solutions, including NaCl, KCl, and HCl (pH2), were used to separate fucoidan from chitosan-fucoidan complex. The results showed that the separation ability of NaCl was slightly higher than that of KCl. Moreover, the price of NaCl is lower than that of KCl. Given the quality-price rate, NaCl solution was chosen as the separation solution. Thirdly, the concentration and ratio of NaCl solution : sediment influence the separation of fucoidan from chitosan-fucoidan complex. The results showed that the optimal separation conditions include 4 mol/L NaCl solution with the ratio of NaCl solution to sediment at 30 : 1. Fucoidan content was found to be affected by different separation time. Fucoidan content increased with the increase of separation time, and the optimal separation time was 6 h. Compared with traditional alkali extraction method, this method not only reduces the usage of alkali and acid and alleviate environment pollution, but also has the comparable extraction yield of fucoidan. It is a potential method for extraction of fucoidan.


Assuntos
Quitosana/química , Laminaria/genética , Polissacarídeos/química , Quitosana/análogos & derivados , Alga Marinha/química , Cloreto de Sódio/química , Solventes/química
19.
J Exp Bot ; 64(10): 2653-64, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23606364

RESUMO

The metabolism of bromine in marine brown algae remains poorly understood. This contrasts with the recent finding that the accumulation of iodide in the brown alga Laminaria serves the provision of an inorganic antioxidant - the first case documented from a living system. The aim of this study was to use an interdisciplinary array of techniques to study the chemical speciation, transformation, and function of bromine in Laminaria and to investigate the link between bromine and iodine metabolism, in particular in the antioxidant context. First, bromine and iodine levels in different Laminaria tissues were compared by inductively coupled plasma MS. Using in vivo X-ray absorption spectroscopy, it was found that, similarly to iodine, bromine is predominantly present in this alga in the form of bromide, albeit at lower concentrations, and that it shows similar behaviour upon oxidative stress. However, from a thermodynamic and kinetic standpoint, supported by in vitro and reconstituted in vivo assays, bromide is less suitable than iodide as an antioxidant against most reactive oxygen species except superoxide, possibly explaining why kelps prefer to accumulate iodide. This constitutes the first-ever study exploring the potential antioxidant function of bromide in a living system and other potential physiological roles. Given the tissue-specific differences observed in the content and speciation of bromine, it is concluded that the bromide uptake mechanism is different from the vanadium iodoperoxidase-mediated uptake of iodide in L. digitata and that its function is likely to be complementary to the iodide antioxidant system for detoxifying superoxide.


Assuntos
Antioxidantes/metabolismo , Bromo/metabolismo , Iodo/metabolismo , Kelp/metabolismo , Laminaria/metabolismo , Bromo/análise , Iodeto Peroxidase/genética , Iodeto Peroxidase/metabolismo , Iodo/análise , Kelp/química , Kelp/genética , Laminaria/química , Laminaria/genética
20.
Adv Food Nutr Res ; 64: 85-96, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-22054940

RESUMO

Laminaria is a kelp that finds its place in the brown algae family. It has been an area of study for past many years, and its wonderful biological properties have always attracted medical professionals and researchers to explore more and more from this wonder kelp. The constituents of Laminaria include iodine, potassium, magnesium, calcium and iron. Iodine compounds, TEA-hydroiodide in particular, are great lipolytic agents as they stimulate lipase activity. Laminarins on the other hand are used as a tumor angiogenic blocker. This genus of the kelps is also rich in algin, a high molecular weight polysaccharide that forms viscous colloidal solutions or gels in water leading to the use of kelp derivatives as bulk laxatives. It has great applications in cosmeceutical science, as well as some antibacterial properties have also been assigned to Laminaria. A deeper insight into the physical, biological, and chemical properties of this wonder kelp would lead to further exploitation of Laminaria for medicinal and cosmeceutical purpose.


Assuntos
Laminaria/química , Laminaria/fisiologia , Ecossistema , Laminaria/classificação , Laminaria/genética , Oceanos e Mares , Reprodução
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