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1.
Appl Environ Microbiol ; 88(10): e0003522, 2022 05 24.
Artigo em Inglês | MEDLINE | ID: mdl-35477262

RESUMO

The Gram-positive bacterium Listeria monocytogenes is an important pathogen that causes a foodborne illness with a high percentage of fatalities. Surface proteins, specifically expressed from a wide range of L. monocytogenes serotypes under selective enrichment culture conditions, can serve as targets for the detection and isolation of this pathogen using antibody-based methods. Among a number of surface proteins identified by mass spectrometry in a previous proteomic study, six candidates (annotated as LMOf2365_0148, LMOf2365_0312, LMOf2365_0546, LMOf2365_1883, LMOf2365_2111, and LMOf2365_2742) were selected here for investigating their expression in the bacterial cells cultured in vitro by raising rabbit polyclonal antibodies (PAbs) against the recombinant form of each candidate. These protein candidates contained regions conserved among various L. monocytogenes isolates but variable in other Listeria species. LMOf2365_0148, an uncharacterized protein with a LPXTG motif accountable for covalent linkage to the cell wall peptidoglycan, exhibited a strong reaction signal from anti-LMOf2365_0148 PAb binding to the cell surface, as detected by immunofluorescence microscopy. Further study, through the generation of a panel of mouse monoclonal antibodies (MAbs) to the recombinant LMOf2365_0148, showed that one of the MAbs, M3686, reacted to bacterial isolates belonging to all three lineages of L. monocytogenes under Health Canada's standard enrichment culture conditions (MFHPB-07 and MFHPB-30). These results demonstrated the potential of using LMOf2365_0148 as a surface biomarker, in conjunction with specific MAbs developed here, for the isolation and detection of L. monocytogenes from foods and food processing environments. IMPORTANCE Strains of Listeria monocytogenes are differentiated serologically into at least 13 serotypes and grouped phylogenetically into 4 distinct lineages (I, II, III, and IV). No single monoclonal antibody (MAb) reported to date is capable of binding to the surface of L. monocytogenes strains representing all the serotypes. This study assessed the expression of six surface proteins selected from a previous proteomic study and demonstrated that surface protein LMOf2365_0148 has the greatest potential as a surface biomarker. A panel of 24 MAbs to LMOf2365_0148 were assessed extensively, revealing that one of the MAbs, M3686, reacted to a wide range of L. monocytogenes isolates (lineage I, II, and III isolates) grown under standard enrichment culture conditions and thus led to the conclusion that LMOf2365_0148 is a useful novel surface biomarker for identifying, detecting, and isolating the pathogen from food and environmental samples.


Assuntos
Listeria monocytogenes , Proteômica , Anticorpos Monoclonais , Biomarcadores/metabolismo , Listeria/química , Listeria/metabolismo , Listeria monocytogenes/química , Listeria monocytogenes/metabolismo , Proteínas de Membrana/metabolismo
2.
Protein Pept Lett ; 28(10): 1115-1126, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34139970

RESUMO

AIMS: To encapsulate a purified bacteriocin into a nanovesicles and check its antibacterial effect. BACKGROUND: Although the use of nano-encapsulated bacteriocins in food matrices is poorly reported, encapsulated nisin can reduce L. monocytogenes counts in whole and skimmed milk and in soft cheese. OBJECTIVE: The present study deals with the extraction and purification of a bacteriocin from an isolated strain Pediococcus pentosaceus KC692718. A comparative study of the effect of free pediocin and liposome encapsulated pediocin against Listeria sp. was performed. METHODS: The purification of the extracted cell free supernatant was subjected to ammonium sulphate precipitation, cation exchange chromatography followed by gel permeation chromatography. The bacteriocin activity and protein concentration were determined using Lowry's method. The characterization of the pure pediocin was done. Liposome like nanovesicle was constructed and the stability of the liposome encapsulated pediocin was checked. Finally, the antibacterial effect was comparatively studied of the free pediocin, liposome, and liposome encapsulated pediocin simultaneously. RESULTS: The pediocin of 3.6kDa was purified with a specific activity of 898.8. AU/mg. It remained stable from pH 2.0-8.0 was found to be moderately stable above 80°C and remain stable for one month when stored at -20°C. The encapsulated pediocin showed stability since it retained 50% of its initial activity. The encapsulated pediocin showed 89% of encapsulation efficiency. CONCLUSION: The encapsulated pediocin not only improved pediocin stability but also enhanced the controlled release of the antimicrobial substances, enough for inhibiting the foodborne pathogen L. monocytogenes.


Assuntos
Antibacterianos/química , Lipossomos/química , Pediocinas/química , Pediococcus pentosaceus/química , Antibacterianos/farmacologia , Liberação Controlada de Fármacos , Concentração de Íons de Hidrogênio , Listeria/química , Testes de Sensibilidade Microbiana , Nisina/química , Nisina/farmacologia , Pediocinas/farmacologia , Temperatura
3.
J Food Sci ; 86(7): 3188-3194, 2021 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-34146420

RESUMO

Food processors invest significant resources into environmental sampling to detect contamination with potential pathogens, particularly Listeria monocytogenes. To facilitate these efforts, multiple environmental sampling tests (ESTs) have been developed and commercialized that minimize workload, turnaround time, and cost while providing convenient colorimetric detection. For presumptive-positive ESTs, we hypothesized that a relatively minor additional investment could provide, in addition to species confirmation, valuable strain typing data for tracking pathogen spread through a facility, identifying harborage sites, and distinguishing sporadic from persistent or resident contaminants. This hypothesis is based on the demonstrated compatibility of polymorphic locus sequence typing (PLST) with crude samples including food enrichments. Five Listeria ESTs were tested here: broth-based InSite (Hygiena), Path-Chek (Mericon), and Pathfinder (Hardy Diagnositics); and gel-based Petrifilm (3M) and HardyChrom (Hardy Diagnostics). ESTs were inoculated with strains representing two common L. monocytogenes serotypes and nonpathogenic Listeria innocua. Following incubation, broths or suspended colonies were heat treated to inactivate bacteria. Lysates or purified DNAs were prepared and used as templates in PCRs targeting the previously described PLST loci LmiMT1 and LisMT2. Single clear products were obtained from all inoculated ESTs; uninoculated controls were negative. PCR products were subjected to Sanger sequencing, yielding high-quality chromatograms. Phylogenetic analysis confirmed identities to previously determined sequences and revealed relatedness to serotype-matched strains represented in GenBank databases. PRACTICAL APPLICATION: Multiple environmental sampling tests have been commercialized in recent years to facilitate the proactive detection of pathogens, particularly Listeria monocytogenes, within food processing facilities. Coupling a positive detection test with strain typing would enhance its value by providing data that can be used to track pathogen spread through a facility, identify harborage sites, and distinguish sporadic from resident contamination.


Assuntos
Monitoramento Ambiental/métodos , Contaminação de Alimentos/análise , Manipulação de Alimentos/métodos , Listeria/química , Listeria/genética , Tipagem de Sequências Multilocus/métodos , Filogenia , Reação em Cadeia da Polimerase/métodos
4.
Carbohydr Polym ; 235: 115968, 2020 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-32122502

RESUMO

This study aimed at decontamination of seeds destined for edible sprout production from Listeria using chitosan (CS) coatings incorporated with synergetic lysozyme-nisin (LYS-NIS) mixtures. Low molecular weight (LMW) CS coating showed the highest potency against Listeria innocua, followed by medium molecular weight (MMW) and high molecular weight (HMW) CSs. The LMW CS film with LYS-NIS also caused almost 1.5-fold greater log reduction (∼5 log) in initial L. innocua load of broth culture than MMW and HMW CS films with LYS-NIS within 6 days. Moreover, LMW CS coating with LYS-NIS reduced the initial Listeria loads of inoculated mung beans, lentils, and wheats by 3.3, 3.4 and 4.1 log, respectively. Antimicrobial coating did not affect seed germination rates considerably. The LYS-NIS addition increased yellowness and opacity of films, and caused limited changes in their mechanical and morphological properties. LMW CS coating with LYS-NIS reduces risk of listeriosis from sprouted seeds.


Assuntos
Antibacterianos/farmacologia , Quitosana/farmacologia , Listeria/química , Muramidase/metabolismo , Nisina/farmacologia , Sementes/efeitos dos fármacos , Antibacterianos/química , Quitosana/química , Microbiologia de Alimentos , Conservação de Alimentos , Listeria/efeitos dos fármacos , Testes de Sensibilidade Microbiana , Muramidase/química , Nisina/química , Tamanho da Partícula , Sementes/crescimento & desenvolvimento , Sementes/microbiologia , Propriedades de Superfície
5.
Food Microbiol ; 87: 103381, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-31948622

RESUMO

Indirect impedance has been used for the detection and enumeration of bacteria, however there is limited data regarding the ability of the method to measure growth and inhibition of microorganisms in food in response to preservatives. The aim of this study was to evaluate the suitability of the technique to determine maximum growth rates of Listeria innocua (used as a surrogate for Listeria monocytogenes) in complex food matrices to which multiple preservative factors had been applied and assess the suitability of the data for use in predictive microbiology. Growth of L. innocua in laboratory medium (BHI broth) and two food matrices (zucchini purée and béarnaise sauce) under varying conditions of pH (5 & 5.3), water activity (0.93, 0.96 & 0.98) and acetic and propionic acid concentration (0, 1 & 2 mM) was monitored by the conductimetric Rapid Automated Bacterial Impedance Technology (R.A.B.I.T) system by means of CO2 emission for up to 120 h. Growth rates of L. innocua were determined for several conditions across the three test matrices and a good correlation between detection times and initial inoculum level was observed in most cases (R2 ≥ 0.82). However, growth of L. innocua was not detected in a large number of conditions and comparison of growth rates determined by indirect impedance to those determined by plate counts indicated that in general, the R.A.B.I.T. system under-estimated growth. This study demonstrates that there are limitations associated with the technology, and as a result the system may be unsuitable for measuring microbial growth rates in complex food matrices under the environmental conditions tested and within the time duration of the study.


Assuntos
Contagem de Colônia Microbiana/métodos , Técnicas Eletroquímicas/métodos , Microbiologia de Alimentos/métodos , Listeria/química , Listeria/crescimento & desenvolvimento , Dióxido de Carbono/análise , Dióxido de Carbono/metabolismo , Impedância Elétrica , Contaminação de Alimentos/análise , Concentração de Íons de Hidrogênio , Listeria/metabolismo , Listeria monocytogenes/química , Listeria monocytogenes/crescimento & desenvolvimento , Listeria monocytogenes/metabolismo , Água/análise , Água/metabolismo
6.
Protein Sci ; 29(4): 1004-1017, 2020 04.
Artigo em Inglês | MEDLINE | ID: mdl-31981247

RESUMO

A distinguishing feature of camel (Camelus dromedarius) VHH domains are noncanonical disulfide bonds between CDR1 and CDR3. The disulfide bond may provide an evolutionary advantage, as one of the cysteines in the bond is germline encoded. It has been hypothesized that this additional disulfide bond may play a role in binding affinity by reducing the entropic penalty associated with immobilization of a long CDR3 loop upon antigen binding. To examine the role of a noncanonical disulfide bond on antigen binding and the biophysical properties of a VHH domain, we have used the VHH R303, which binds the Listeria virulence factor InlB as a model. Using site directed mutagenesis, we produced a double mutant of R303 (C33A/C102A) to remove the extra disulfide bond of the VHH R303. Antigen binding was not affected by loss of the disulfide bond, however the mutant VHH displayed reduced thermal stability (Tm = 12°C lower than wild-type), and a loss of the ability to fold reversibly due to heat induced aggregation. X-ray structures of the mutant alone and in complex with InlB showed no major changes in the structure. B-factor analysis of the structures suggested that the loss of the disulfide bond elicited no major change on the flexibility of the CDR loops, and revealed no evidence of loop immobilization upon antigen binding. These results suggest that the noncanonical disulfide bond found in camel VHH may have evolved to stabilize the biophysical properties of the domain, rather than playing a significant role in antigen binding.


Assuntos
Dissulfetos/química , Listeria/química , Anticorpos de Domínio Único/química , Fatores de Virulência/química , Animais , Reações Antígeno-Anticorpo , Sítios de Ligação , Camelus , Dissulfetos/imunologia , Listeria/imunologia , Modelos Moleculares , Anticorpos de Domínio Único/imunologia , Fatores de Virulência/imunologia
7.
Comput Biol Med ; 112: 103374, 2019 09.
Artigo em Inglês | MEDLINE | ID: mdl-31419629

RESUMO

BACKGROUND: Effector proteins of bacteria infect their hosts by specific dedicated machinery identified as secretion systems. Currently, no mechanism to identify the effector proteins based on their 3D structure has been reported in the literature. In order to identify effector proteins, extraction of features from their 3D structure is crucial. However, effector protein datasets are highly imbalanced. State-of-the-art oversampling algorithms are incapable of dealing with such datasets. They usually eliminate samples as noise. They do not ensure generation of synthetic samples strictly in the vicinity of the minority class samples. In effector protein datasets, deletion of any samples as noise would lead to loss of crucial information. Furthermore, generation of synthetic samples of the minority class in the vicinity of majority class samples would lead to an inept classifier. METHOD: In this paper, we introduce an algorithm called Cluster Quality based Non-Reductional (CQNR) oversampling technique. Its novelty lies in generating new samples proportional to the distribution of samples of the minority classes, without eliminating any sample as noise. Utilizing CQNR, we develop a novel Effector Protein Predictor based on the 3D (EPP3D) structure of proteins. EPP3D is trained on a feature set, balanced by CQNR, comprising 3D structure-based features, namely, convex hull layer count, surface atom composition, radius of gyration, packing density and compactness, derived from the 3D structure of the experimentally verified effector proteins. RESULT: Fscore and Gmean demonstrate that CQNR has outperformed some well-established oversampling methods by approximately 3-5%, with respect to classification accuracy, on five benchmark datasets and three other highly imbalanced synthetically generated datasets. Likewise, for classification of pathogenic effector proteins, a significant improvement of 7-9% in accuracy has been noticed, on the application of CQNR followed by EPP3D. Moreover, EPP3D has exhibited an improvement of 2-4% in classifying effector proteins based on their 3D structure compared to the classification of effector proteins based on their amino acid sequences. The software for CQNR and EPP3D are available at http://projectphd.droppages.com/CQNR.html.


Assuntos
Algoritmos , Proteínas de Bactérias/química , Bacteroides/química , Bases de Dados de Proteínas , Listeria/química , Modelos Moleculares , Domínios Proteicos
8.
Inorg Chem ; 58(17): 11351-11363, 2019 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-31433627

RESUMO

Iron storage in biology is carried out by cage-shaped proteins of the ferritin superfamily, one of which is the dodecameric protein Dps. In Dps, four distinct steps lead to the formation of metal nanoparticles: attraction of ion-aquo complexes to the protein matrix, passage of these complexes through translocation pores, oxidation of these complexes at ferroxidase centers, and, ultimately, nanoparticle formation. In this study, we investigated Dps from Listeria innocua to structurally characterize these steps for Co2+, Zn2+, and La3+ ions. The structures reveal that differences in their ion coordination chemistry determine alternative metal ion-binding sites on the areas of the surface surrounding the translocation pore that captures nine La3+, three Co2+, or three Zn2+ ions as aquo clusters and passes them on for translocation. Inside these pores, ion-selective conformational changes at key residues occur before a gating residue to actively move ions through the constriction zone. Ions upstream of the Asp130 gate residue are typically hydrated, while ions downstream directly interact with the protein matrix. Inside the cavity, ions move along negatively charged residues to the ferroxidase center, where seven main residues adapt to the three different ions by dynamically changing their conformations. In total, we observed more than 20 metal-binding sites per Dps monomer, which clearly highlights the metal-binding capacity of this protein family. Collectively, our results provide a detailed structural description of the preparative steps for amino acid-assisted biomineralization in Dps proteins, demonstrating unexpected protein matrix plasticity.


Assuntos
Proteínas de Bactérias/química , Proteínas de Ligação a DNA/química , Listeria/química , Metais Pesados/química , Proteínas de Bactérias/biossíntese , Proteínas de Ligação a DNA/biossíntese , Modelos Moleculares , Eletricidade Estática
9.
Food Microbiol ; 76: 481-486, 2018 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-30166177

RESUMO

In this study, both microbial inactivation and growth of Listeria spp. inoculated in commercial free-starter fresh cheese was evaluated after high-pressure processing (HPP). HPP conditions (300, 400, 500 and 600 MPa at 6 °C for 5 min) and inoculum level (3-4 or 6-7 log CFU/g of cheese), as well as differences among strains inoculated (Listeria innocua, L. monocytogenes CECT 4031 and L. monocytogenes Scott A) were investigated. Inactivation and generation of sublethal injury were determined after HPP using ALOA (Agar Listeria according to Ottaviani and Agosti) and TAL (Thin Agar Layer) plating methods, respectively. Listeria inactivation increased with the pressure applied, presenting some statistical differences between the employed strains, inoculum level and sublethal injury. The highest lethality values were obtained at 600 MPa for the three strains tested, although the 500 MPa treatment presented high lethality for L. innocua and L. monocytogenes CECT 4031. After treatment, L. innocua and L. monocytogenes CECT 4031 counts in fresh cheese increased gradually during cold storage. By contrast, counts in cheeses inoculated with L. monocytogenes Scott A did not change significantly (p ≥ 0.05), being this strain the most pressure resistant and with the slowest growth rate. The manuscript present information supporting that, strains with high-level resistance should be employed during inactivation studies, instead of surrogate microorganisms. Application of HPP treatments of 500 MPa and especially 600 MPa on fresh cheeses would be effective to eliminate the most resistant microorganism to a level that should not present a public health risk under normal conditions of distribution and storage.


Assuntos
Queijo/microbiologia , Manipulação de Alimentos/métodos , Listeria/química , Listeria/crescimento & desenvolvimento , Queijo/economia , Contaminação de Alimentos/análise , Contaminação de Alimentos/prevenção & controle , Manipulação de Alimentos/instrumentação , Microbiologia de Alimentos , Listeria/isolamento & purificação , Viabilidade Microbiana
10.
J Biol Chem ; 293(23): 8812-8828, 2018 06 08.
Artigo em Inglês | MEDLINE | ID: mdl-29678880

RESUMO

ß-1,2-Glucans are bacterial carbohydrates that exist in cyclic or linear forms and play an important role in infections and symbioses involving Gram-negative bacteria. Although several ß-1,2-glucan-associated enzymes have been characterized, little is known about how ß-1,2-glucan and its shorter oligosaccharides (Sop n s) are captured and imported into the bacterial cell. Here, we report the biochemical and structural characteristics of the Sop n -binding protein (SO-BP, Lin1841) associated with the ATP-binding cassette (ABC) transporter from the Gram-positive bacterium Listeria innocua Calorimetric analysis revealed that SO-BP specifically binds to Sop n s with a degree of polymerization of 3 or more, with Kd values in the micromolar range. The crystal structures of SO-BP in an unliganded open form and in closed complexes with tri-, tetra-, and pentaoligosaccharides (Sop3-5) were determined to a maximum resolution of 1.6 Å. The binding site displayed shape complementarity to Sop n , which adopted a zigzag conformation. We noted that water-mediated hydrogen bonds and stacking interactions play a pivotal role in the recognition of Sop3-5 by SO-BP, consistent with its binding thermodynamics. Computational free-energy calculations and a mutational analysis confirmed that interactions with the third glucose moiety of Sop n s are significantly responsible for ligand binding. A reduction in unfavorable changes in binding entropy that were in proportion to the lengths of the Sop n s was explained by conformational entropy changes. Phylogenetic and sequence analyses indicated that SO-BP ABC transporter homologs, glycoside hydrolases, and other related proteins are co-localized in the genomes of several bacteria. This study may improve our understanding of bacterial ß-1,2-glucan metabolism and promote the discovery of unidentified ß-1,2-glucan-associated proteins.


Assuntos
Proteínas de Bactérias/metabolismo , Listeria/metabolismo , Polissacarídeos Bacterianos/metabolismo , beta-Glucanas/metabolismo , Proteínas de Bactérias/química , Sítios de Ligação , Cristalografia por Raios X , Listeria/química , Simulação de Dinâmica Molecular , Polissacarídeos Bacterianos/química , Ligação Proteica , Conformação Proteica , Termodinâmica , beta-Glucanas/química
11.
Anal Bioanal Chem ; 409(17): 4247-4256, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28484808

RESUMO

Listeria monocytogenes is a Gram-positive bacterium and an opportunistic food-borne pathogen which poses significant risk to the immune-compromised and pregnant due to the increased likelihood of acquiring infection and potential transmission of infection to the unborn child. Conventional methods of analysis suffer from either long turn-around times or lack the ability to discriminate between Listeria spp. reliably. This paper investigates an alternative method of detecting Listeria spp. using two novel enzyme substrates that liberate exogenous volatile organic compounds in the presence of α-mannosidase and D-alanyl aminopeptidase. The discriminating capabilities of this approach for identifying L. monocytogenes from other species of Listeria are investigated. The liberated volatile organic compounds (VOCs) are detected using an automated analytical technique based on static headspace-multi-capillary column-gas chromatography-ion mobility spectrometry (SHS-MCC-GC-IMS). The results obtained by SHS-MCC-GC-IMS are compared with those obtained by the more conventional analytical technique of headspace-solid phase microextraction-gas chromatography-mass spectrometry (HS-SPME-GC-MS). The results found that it was possible to differentiate between L. monocytogenes and L. ivanovii, based on their VOC response from α-mannosidase activity.


Assuntos
Cromatografia Gasosa-Espectrometria de Massas/métodos , Listeria/isolamento & purificação , Compostos Orgânicos Voláteis/análise , Humanos , Listeria/química , Listeria/classificação , Listeria monocytogenes/química , Listeria monocytogenes/classificação , Listeria monocytogenes/isolamento & purificação , Listeriose/microbiologia , Análise de Componente Principal , Microextração em Fase Sólida/métodos
12.
Appl Microbiol Biotechnol ; 101(13): 5365-5375, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28508923

RESUMO

In the fresh produce industry, validation of sanitation efficacy is critical to prevent cross-contamination of produce. The current validation approaches are either based on time-consuming plate counting assays or indirect measurements of chemical properties of wash water. In the study, the focus was to identify biomarkers that can provide direct assessment of oxidative damage in bacteria upon exposure to sanitizers in the presence of fresh produce and correlation of these oxidative biomarkers with logarithmic inactivation of bacteria. Two endogenous bacterial biomarkers, protein carbonylation and thiol oxidation, were evaluated for assessing oxidative damage in Escherichia coli O157:H7 and Listeria innocua during sanitation of pre-cut lettuce leaves with NaOCl or H2O2. Results show that NaOCl treatment was more effective than H2O2 for oxidation of both the intracellular thiols and protein carbonylation in the selected strains. Statistical analysis of the measurements illustrates that oxidation of the intracellular thiol induced by NaOCl or H2O2 was correlated with logarithmic reduction of E. coli O157:H7 and L. innocua. In contrast, changes in the protein carbonylation content were not correlated with reduction in bacterial cell viability. In summary, these results provide a novel approach to validate sanitation efficacy for the fresh produce industry.


Assuntos
Bactérias/metabolismo , Desinfecção , Microbiologia de Alimentos , Lactuca/microbiologia , Estresse Oxidativo , Bactérias/química , Bactérias/efeitos dos fármacos , Biomarcadores/análise , Desinfetantes/farmacologia , Escherichia coli/química , Escherichia coli/efeitos dos fármacos , Escherichia coli/metabolismo , Peróxido de Hidrogênio/farmacologia , Lactuca/efeitos dos fármacos , Listeria/química , Listeria/efeitos dos fármacos , Listeria/metabolismo , Oxidantes/farmacologia , Oxirredução , Carbonilação Proteica , Saneamento , Hipoclorito de Sódio/farmacologia , Compostos de Sulfidrila/análise , Compostos de Sulfidrila/metabolismo
13.
Proteins ; 84(12): 1810-1822, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27618147

RESUMO

The nearly 50,000 known Nudix proteins have a diverse array of functions, of which the most extensively studied is the catalyzed hydrolysis of aberrant nucleotide triphosphates. The functions of 171 Nudix proteins have been characterized to some degree, although physiological relevance of the assayed activities has not always been conclusively demonstrated. We investigated substrate specificity for eight structurally characterized Nudix proteins, whose functions were unknown. These proteins were screened for hydrolase activity against a 74-compound library of known Nudix enzyme substrates. We found substrates for four enzymes with kcat /Km values >10,000 M-1  s-1 : Q92EH0_LISIN of Listeria innocua serovar 6a against ADP-ribose, Q5LBB1_BACFN of Bacillus fragilis against 5-Me-CTP, and Q0TTC5_CLOP1 and Q0TS82_CLOP1 of Clostridium perfringens against 8-oxo-dATP and 3'-dGTP, respectively. To ascertain whether these identified substrates were physiologically relevant, we surveyed all reported Nudix hydrolytic activities against NTPs. Twenty-two Nudix enzymes are reported to have activity against canonical NTPs. With a single exception, we find that the reported kcat /Km values exhibited against these canonical substrates are well under 105 M-1  s-1 . By contrast, several Nudix enzymes show much larger kcat /Km values (in the range of 105 to >107 M-1  s-1 ) against noncanonical NTPs. We therefore conclude that hydrolytic activities exhibited by these enzymes against canonical NTPs are not likely their physiological function, but rather the result of unavoidable collateral damage occasioned by the enzymes' inability to distinguish completely between similar substrate structures. Proteins 2016; 84:1810-1822. © 2016 Wiley Periodicals, Inc.


Assuntos
Proteínas de Bactérias/química , Fosfatos de Dinucleosídeos/química , Pirofosfatases/química , Adenosina Difosfato Ribose/química , Adenosina Difosfato Ribose/metabolismo , Bacillus/química , Bacillus/enzimologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Clonagem Molecular , Clostridium perfringens/química , Clostridium perfringens/enzimologia , Nucleotídeos de Desoxiadenina/química , Nucleotídeos de Desoxiadenina/metabolismo , Nucleotídeos de Desoxiguanina/química , Nucleotídeos de Desoxiguanina/metabolismo , Fosfatos de Dinucleosídeos/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Cinética , Listeria/química , Listeria/enzimologia , Família Multigênica , Pirofosfatases/genética , Pirofosfatases/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidade por Substrato , Nudix Hidrolases
14.
J Immunol ; 197(5): 1692-8, 2016 09 01.
Artigo em Inglês | MEDLINE | ID: mdl-27448587

RESUMO

Transient lymphopenia is one hallmark of sepsis, and emergent data indicate the CD4 T cell compartment in sepsis survivors is numerically and functionally altered (when examined at the Ag-specific level) compared with nonseptic control subjects. Previous data from our laboratory demonstrated Ag-independent, lymphopenia-induced homeostatic proliferation to be a contributing mechanism by which CD4 T cells numerically recover in sepsis survivors. However, we reasoned it is also formally possible that some CD4 T cells respond directly to Ag expressed by gut-resident microbes released during polymicrobial sepsis. The effect of gut microbiome leakage on CD4 T cells is currently unknown. In this study, we explored the number and function of endogenous CD4 T cells specific for segmented filamentous bacterium (SFB) after cecal ligation and puncture (CLP)-induced sepsis using mice that either contained or lacked SFB as a normal gut-resident microbe. Interestingly, SFB-specific CD4 T cells underwent Ag-driven proliferation in CLP-treated SFB(+), but not in SFB(-), mice. Moreover, CLP-treated SFB(+) mice showed resistance to secondary lethal infection with recombinant SFB Ag-expressing virulent Listeria (but not wild-type virulent Listeria), suggesting the CLP-induced polymicrobial sepsis primed for a protective response by the SFB-specific CD4 T cells. Thus, our data demonstrate that the numerical recovery and functional responsiveness of Ag-specific CD4 T cells in sepsis survivors is, in part, modulated by the intestinal barrier's health discreetly defined by individual bacterial populations of the host's microbiome.


Assuntos
Antígenos de Bactérias/imunologia , Linfócitos T CD4-Positivos/imunologia , Microbioma Gastrointestinal , Sepse/imunologia , Sepse/microbiologia , Animais , Ceco/cirurgia , Citometria de Fluxo , Microbioma Gastrointestinal/imunologia , Intestinos/microbiologia , Listeria/química , Listeria/imunologia , Listeria/patogenicidade , Linfopenia/complicações , Camundongos , Camundongos Endogâmicos C57BL
15.
Bioconjug Chem ; 27(5): 1222-6, 2016 05 18.
Artigo em Inglês | MEDLINE | ID: mdl-27017898

RESUMO

Bioorthogonal chemistry has been applied to study a multitude of biological processes in complex environments through incorporation and detection of small functional groups. However, few reactions are known to be compatible with each other to allow for studies of more than one biomolecule simultaneously. Here we describe a dual labeling method wherein two stereoelectronically contrasting nitrone tags are incorporated into bacteria peptidoglycan and detected via strain-promoted alkyne-nitrone cycloaddition (SPANC) simultaneously. Furthermore, we show orthogonality with the azide functionality broadening the potential for simultaneous biomolecular target labeling in less accommodating metabolic pathways. We also demonstrate the simultaneous labeling of two different food-associated bacteria, L. innocua (a model for the food-born pathogen L. monocytogenes) and L. lactis (a fermentation bacterium). The ability to monitor multiple processes and even multiple organisms concurrently through nitrone/nitrone or nitrone/azide incorporation strengthens the current bioorthogonal toolbox and gives rise to robust duplex labeling of organisms to potentiate the studies of rapid biological phenomena.


Assuntos
Alcinos/química , Reação de Cicloadição , Listeria/química , Óxidos de Nitrogênio/química , Peptidoglicano/química , Coloração e Rotulagem , Estereoisomerismo
16.
Cancer Gene Ther ; 22(8): 375-9, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26227823

RESUMO

Pancreatic malignancies, the fourth leading cause of cancer deaths, have an aggressive behavior with poor prognosis, resulting in a 5-year survival rate of only 4%. It is typically a silent malignancy until patients develop metastatic disease. Targeted radionuclide therapies of cancer such as radiolabeled peptides, which bind to the receptors overexpressed by cancer cells and radiolabeled antibodies to tumor-specific antigens provide a viable alternative to chemotherapy and external beam radiation of metastatic cancers. Multiple clinical trials of targeted radionuclide therapy of pancreatic cancer have been performed in the last decade and demonstrated safety and potential efficacy of radionuclide therapy for treatment of this formidable disease. Although a lot of progress has been made in treatment of pancreatic neuroendocrine tumors with radiolabeled (90)Y and (177)Lu somatostatin peptide analogs, pancreatic adenocarcinomas remain a major challenge. Novel approaches such as peptides and antibodies radiolabeled with alpha emitters, pre-targeting, bispecific antibodies and biological therapy based on the radioactive tumorlytic bacteria might offer a potential breakthrough in treatment of pancreatic adenocarcinomas.


Assuntos
Neoplasias Pancreáticas/radioterapia , Compostos Radiofarmacêuticos/uso terapêutico , Adenocarcinoma/patologia , Adenocarcinoma/radioterapia , Animais , Anticorpos Monoclonais/química , Anticorpos Monoclonais/uso terapêutico , Carcinoma Neuroendócrino/diagnóstico por imagem , Carcinoma Neuroendócrino/patologia , Carcinoma Neuroendócrino/radioterapia , Ensaios Clínicos como Assunto , Humanos , Listeria/química , Terapia de Alvo Molecular/métodos , Octreotida/análogos & derivados , Octreotida/uso terapêutico , Compostos Organometálicos/uso terapêutico , Neoplasias Pancreáticas/diagnóstico por imagem , Neoplasias Pancreáticas/tratamento farmacológico , Neoplasias Pancreáticas/patologia , Radioisótopos/uso terapêutico , Cintilografia , Rênio/uso terapêutico
17.
Can J Microbiol ; 61(4): 263-71, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-25728340

RESUMO

The antibacterial mechanism of a Cinnamomum cassia essential oil from Vietnam and of its main component (trans-cinnamaldehyde, 90% (m/m) of C. cassia essential oil) against a Listeria innocua strain was investigated to estimate their potential for food preservation. In the presence of C. cassia essential oil or trans-cinnamaldehyde at their minimal bactericidal concentration (2700 µg·mL(-1)), L. innocua cells fluoresced green after staining with Syto9® and propidium iodide, as observed by epifluorescence microscopy, suggesting that the perturbation of membrane did not cause large pore formation and cell lysis but may have introduced the presence of viable but nonculturable bacteria. Moreover, the fluidity, potential, and intracellular pH of the cytoplasmic membrane were perturbed in the presence of the essential oil or trans-cinnamaldehyde. However, these membrane perturbations were less severe in the presence of trans-cinnamaldehyde than in the presence of multicomponent C. cassia essential oil. This indicates that in addition to trans-cinnamaldehyde, other minor C. cassia essential oil components play a major role in its antibacterial activity against L. innocua cells.


Assuntos
Acroleína/análogos & derivados , Antibacterianos/farmacologia , Cinnamomum/química , Listeria/efeitos dos fármacos , Óleos Voláteis/farmacologia , Extratos Vegetais/farmacologia , Acroleína/química , Acroleína/farmacologia , Antibacterianos/química , Membrana Celular/química , Membrana Celular/efeitos dos fármacos , Membrana Celular/metabolismo , Listeria/química , Listeria/crescimento & desenvolvimento , Listeria/metabolismo , Fluidez de Membrana/efeitos dos fármacos , Viabilidade Microbiana/efeitos dos fármacos , Óleos Voláteis/química , Extratos Vegetais/química , Força Próton-Motriz/efeitos dos fármacos
18.
Appl Environ Microbiol ; 80(24): 7758-70, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25304506

RESUMO

Epsilon-poly-l-lysine (ε-PL) is a natural antimicrobial cationic peptide which is generally regarded as safe (GRAS) as a food preservative. Although its antimicrobial activity is well documented, its mechanism of action is only vaguely described. The aim of this study was to clarify ε-PL's mechanism of action using Escherichia coli and Listeria innocua as model organisms. We examined ε-PL's effect on cell morphology and membrane integrity and used an array of E. coli deletion mutants to study how specific outer membrane components affected the action of ε-PL. We furthermore studied its interaction with lipid bilayers using membrane models. In vitro cell studies indicated that divalent cations and the heptose I and II phosphate groups in the lipopolysaccharide layer of E. coli are critical for ε-PL's binding efficiency. ε-PL removed the lipopolysaccharide layer and affected cell morphology of E. coli, while L. innocua underwent minor morphological changes. Propidium iodide staining showed that ε-PL permeabilized the cytoplasmic membrane in both species, indicating the membrane as the site of attack. We compared the interaction with neutral or negatively charged membrane systems and showed that the interaction with ε-PL relied on negative charges on the membrane. Suspended membrane vesicles were disrupted by ε-PL, and a detergent-like disruption of E. coli membrane was confirmed by atomic force microscopy imaging of supported lipid bilayers. We hypothesize that ε-PL destabilizes membranes in a carpet-like mechanism by interacting with negatively charged phospholipid head groups, which displace divalent cations and enforce a negative curvature folding on membranes that leads to formation of vesicles/micelles.


Assuntos
Antibacterianos/metabolismo , Antibacterianos/farmacologia , Escherichia coli/efeitos dos fármacos , Escherichia coli/metabolismo , Listeria/metabolismo , Polilisina/metabolismo , Transporte Biológico , Membrana Celular/química , Membrana Celular/efeitos dos fármacos , Membrana Celular/metabolismo , Escherichia coli/química , Listeria/química , Listeria/efeitos dos fármacos , Polilisina/farmacologia
19.
Appl Environ Microbiol ; 80(12): 3622-31, 2014 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-24705320

RESUMO

Monitoring cell growth and measuring physical features of food-borne pathogenic bacteria are important for better understanding the conditions under which these organisms survive and proliferate. To address this challenge, buoyant masses of live and dead Escherichia coli O157:H7 and Listeria innocua were measured using Archimedes, a commercially available suspended microchannel resonator (SMR). Cell growth was monitored with Archimedes by observing increased cell concentration and buoyant mass values of live growing bacteria. These growth data were compared to optical density measurements obtained with a Bioscreen system. We observed buoyant mass measurements with Archimedes at cell concentrations between 10(5) and 10(8) cells/ml, while growth was not observed with optical density measurements until the concentration was 10(7) cells/ml. Buoyant mass measurements of live and dead cells with and without exposure to hydrogen peroxide stress were also compared; live cells generally had a larger buoyant mass than dead cells. Additionally, buoyant mass measurements were used to determine cell density and total mass for both live and dead cells. Dead E. coli cells were found to have a larger density and smaller total mass than live E. coli cells. In contrast, density was the same for both live and dead L. innocua cells, while the total mass was greater for live than for dead cells. These results contribute to the ongoing challenge to further develop existing technologies used to observe cell populations at low concentrations and to measure unique physical features of cells that may be useful for developing future diagnostics.


Assuntos
Biofísica/métodos , Escherichia coli O157/química , Escherichia coli O157/crescimento & desenvolvimento , Listeria/química , Listeria/crescimento & desenvolvimento , Biofísica/instrumentação , Viabilidade Microbiana
20.
Nat Commun ; 5: 3690, 2014 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-24751541

RESUMO

Listeriolysin O (LLO) is an essential virulence factor of Listeria monocytogenes that causes listeriosis. Listeria monocytogenes owes its ability to live within cells to the pH- and temperature-dependent pore-forming activity of LLO, which is unique among cholesterol-dependent cytolysins. LLO enables the bacteria to cross the phagosomal membrane and is also involved in activation of cellular processes, including the modulation of gene expression or intracellular Ca(2+) oscillations. Neither the pore-forming mechanism nor the mechanisms triggering the signalling processes in the host cell are known in detail. Here, we report the crystal structure of LLO, in which we identified regions important for oligomerization and pore formation. Mutants were characterized by determining their haemolytic and Ca(2+) uptake activity. We analysed the pore formation of LLO and its variants on erythrocyte ghosts by electron microscopy and show that pore formation requires precise interface interactions during toxin oligomerization on the membrane.


Assuntos
Toxinas Bacterianas/química , Biopolímeros/química , Proteínas de Choque Térmico/química , Proteínas Hemolisinas/química , Sequência de Aminoácidos , Toxinas Bacterianas/genética , Cristalografia por Raios X , Proteínas de Choque Térmico/genética , Proteínas Hemolisinas/genética , Concentração de Íons de Hidrogênio , Listeria/química , Dados de Sequência Molecular , Estrutura Molecular , Mutação , Homologia de Sequência de Aminoácidos , Temperatura
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