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1.
PLoS One ; 17(1): e0262160, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35020753

RESUMO

Advanced analytical methods play an important role in quantifying serum disease biomarkers. The problem of separating thousands of proteins can be reduced by analyzing for a 'sub-proteome', such as the 'metalloproteome', defined as all proteins that contain bound metals. We employed size exclusion chromatography (SEC) coupled to an inductively coupled plasma atomic emission spectrometer (ICP-AES) to analyze plasma from multiple sclerosis (MS) participants (n = 21), acute ischemic stroke (AIS) participants (n = 17) and healthy controls (n = 21) for Fe, Cu and Zn-metalloproteins. Using ANOVA analysis to compare the mean peak areas among the groups revealed no statistically significant differences for ceruloplasmin (p = 0.31), α2macroglobulin (p = 0.51) and transferrin (p = 0.31). However, a statistically significant difference was observed for the haptoglobin-hemoglobin (Hp-Hb) complex (p = 0.04), being driven by the difference between the control group and AIS (p = 0.012), but not with the MS group (p = 0.13), based on Dunnes test. A linear regression model for Hp-Hb complex with the groups now adjusted for age found no statistically significant differences between the groups (p = 0.95), but was suggestive for age (p = 0.057). To measure the strength of association between the Hp-Hb complex and age without possible modifications due to disease, we calculated the Spearman rank correlation in the healthy controls. The latter revealed a positive association (r = 0.39, 95% Confidence Interval = (-0.05, 0.83), which suggests that either the removal of Hp-Hb complexes from the blood circulation slows with age or that the release of Hb from red blood cells increases with age. We also observed that the Fe-peak corresponding to the Hp-Hb complex eluted ~100 s later in ~14% of all study samples, which was not correlated with age or disease diagnosis, but is consistent with the presence of the smaller Hp (1-1) isoform in 15% of the population.


Assuntos
Haptoglobinas/análise , Hemoglobinas/análise , Metaloproteínas/sangue , Adulto , Estudos de Casos e Controles , Ceruloplasmina/análise , Cromatografia em Gel , Cobre/análise , Cobre/isolamento & purificação , Feminino , Humanos , Ferro/análise , Ferro/isolamento & purificação , AVC Isquêmico/metabolismo , AVC Isquêmico/patologia , Masculino , Metaloproteínas/isolamento & purificação , Pessoa de Meia-Idade , Esclerose Múltipla/metabolismo , Esclerose Múltipla/patologia , alfa 2-Macroglobulinas Associadas à Gravidez/análise , Espectrofotometria Atômica , Transferrina/análise
2.
Nat Plants ; 7(3): 365-375, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33731920

RESUMO

Mg-protoporphyrin IX monomethyl ester (MgPME) cyclase catalyses the formation of the isocyclic ring, producing protochlorophyllide a and contributing substantially to the absorption properties of chlorophylls and bacteriochlorophylls. The O2-dependent cyclase is found in both oxygenic phototrophs and some purple bacteria. We overproduced the simplest form of the cyclase, AcsF, from Rubrivivax gelatinosus, in Escherichia coli. In biochemical assays the di-iron cluster within AcsF is reduced by ferredoxin furnished by NADPH and ferredoxin:NADP+ reductase, or by direct coupling to Photosystem I photochemistry, linking cyclase to the photosynthetic electron transport chain. Kinetic analyses yielded a turnover number of 0.9 min-1, a Michaelis-Menten constant of 7.0 µM for MgPME and a dissociation constant for MgPME of 0.16 µM. Mass spectrometry identified 131-hydroxy-MgPME and 131-keto-MgPME as cyclase reaction intermediates, revealing the steps that form the isocyclic ring and completing the work originated by Sam Granick in 1950.


Assuntos
Proteínas de Bactérias/química , Burkholderiales/química , Clorofila/química , Metaloproteínas/química , Protoporfirinas/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/metabolismo , Burkholderiales/enzimologia , Burkholderiales/genética , Clorofila/metabolismo , Clonagem Molecular , Transporte de Elétrons , Escherichia coli , Espectrometria de Massas , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Metaloproteínas/metabolismo , Protoporfirinas/metabolismo
3.
Int J Biol Macromol ; 164: 3901-3908, 2020 Dec 01.
Artigo em Inglês | MEDLINE | ID: mdl-32889000

RESUMO

In recent years, an enormous number of naturally occurring biological macromolecules has been reported worldwide due to its antibacterial and anticancerous potential. Among them, in this study, the copper containing respiratory protein namely haemocyanin (HC) was isolated from the haemolymph of mud crab Scylla serrata. The isolated metalloprotein HC was purified using Sepharose column by gel filtration chromatography. The purified HC was separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and molecular weight of the protein was identified as 95 kDa. Fourier transform infrared spectrophotometer (FT-IR) and nuclear magnetic resonance (1H NMR) spectral data revealed the presence of amino acid constituents. Liquid chromatography tandem mass spectrometry (LC-MS/MS) analysis based mass ion search exposed that the purified protein was HC. HC exhibited an in vitro bacteriostatic effects against the bacterial pathogens and also elevated ROS levels in the treated samples. The half maximal (50%) inhibitory concentration (IC50) of HC was found to be 80 µg/mL against lung cancer cells (A549). Our study collectively addressed the potential antibacterial and anti-cancerous activity of HC. The results obtained from this study suggest that HC can be used for therapeutical application in the near future.


Assuntos
Antibacterianos/farmacologia , Antineoplásicos/farmacologia , Braquiúros/química , Hemolinfa/química , Metaloproteínas/isolamento & purificação , Animais , Antibacterianos/química , Antibacterianos/isolamento & purificação , Antineoplásicos/química , Antineoplásicos/isolamento & purificação , Apoptose/efeitos dos fármacos , Sobrevivência Celular/efeitos dos fármacos , Fenômenos Químicos , Cromatografia Líquida de Alta Pressão , Testes de Sensibilidade Microbiana , Espécies Reativas de Oxigênio , Espectroscopia de Infravermelho com Transformada de Fourier , Análise Espectral , Difração de Raios X
4.
J Am Chem Soc ; 142(27): 11818-11828, 2020 07 08.
Artigo em Inglês | MEDLINE | ID: mdl-32511919

RESUMO

The alkylating warhead of the pancreatic cancer drug streptozotocin (SZN) contains an N-nitrosourea moiety constructed from Nω-methyl-l-arginine (l-NMA) by the multi-domain metalloenzyme SznF. The enzyme's central heme-oxygenase-like (HO-like) domain sequentially hydroxylates Nδ and Nω' of l-NMA. Its C-terminal cupin domain then rearranges the triply modified arginine to Nδ-hydroxy-Nω-methyl-Nω-nitroso-l-citrulline, the proposed donor of the functional pharmacophore. Here we show that the HO-like domain of SznF can bind Fe(II) and use it to capture O2, forming a peroxo-Fe2(III/III) intermediate. This intermediate has absorption- and Mössbauer-spectroscopic features similar to those of complexes previously trapped in ferritin-like diiron oxidases and oxygenases (FDOs) and, more recently, the HO-like fatty acid oxidase UndA. The SznF peroxo-Fe2(III/III) complex is an intermediate in both hydroxylation steps, as shown by the concentration-dependent acceleration of its decay upon exposure to either l-NMA or Nδ-hydroxy-Nω-methyl-l-Arg (l-HMA). The Fe2(III/III) cluster produced upon decay of the intermediate has a small Mössbauer quadrupole splitting parameter, implying that, unlike the corresponding product states of many FDOs, it lacks an oxo-bridge. The subsequent decomposition of the product cluster to one or more paramagnetic Fe(III) species over several hours explains why SznF was previously purified and crystallographically characterized without its cofactor. Programmed instability of the oxidized form of the cofactor appears to be a unifying characteristic of the emerging superfamily of HO-like diiron oxidases and oxygenases (HDOs).


Assuntos
Proteínas de Bactérias/metabolismo , Compostos Férricos/metabolismo , Metaloproteínas/metabolismo , Compostos de Nitrosoureia/metabolismo , Estreptozocina/biossíntese , Proteínas de Bactérias/química , Proteínas de Bactérias/isolamento & purificação , Compostos Férricos/química , Hidroxilação , Metaloproteínas/química , Metaloproteínas/isolamento & purificação , Modelos Moleculares , Estrutura Molecular , Compostos de Nitrosoureia/química , Streptomyces/enzimologia , Estreptozocina/química
5.
Chembiochem ; 21(14): 1981-1987, 2020 07 16.
Artigo em Inglês | MEDLINE | ID: mdl-32189465

RESUMO

Expanding the reaction scope of natural metalloenzymes can provide new opportunities for biocatalysis. Mononuclear non-heme iron-dependent enzymes represent a large class of biological catalysts involved in the biosynthesis of natural products and catabolism of xenobiotics, among other processes. Here, we report that several members of this enzyme family, including Rieske dioxygenases as well as α-ketoglutarate-dependent dioxygenases and halogenases, are able to catalyze the intramolecular C-H amination of a sulfonyl azide substrate, thereby exhibiting a promiscuous nitrene transfer reactivity. One of these enzymes, naphthalene dioxygenase (NDO), was further engineered resulting in several active site variants that function as C-H aminases. Furthermore, this enzyme could be applied to execute this non-native transformation on a gram scale in a bioreactor, thus demonstrating its potential for synthetic applications. These studies highlight the functional versatility of non-heme iron-dependent enzymes and pave the way to their further investigation and development as promising biocatalysts for non-native metal-catalyzed transformations.


Assuntos
Dioxigenases/metabolismo , Compostos Ferrosos/metabolismo , Iminas/metabolismo , Metaloproteínas/metabolismo , Aminação , Biocatálise , Dioxigenases/química , Dioxigenases/isolamento & purificação , Escherichia coli/química , Escherichia coli/citologia , Escherichia coli/metabolismo , Compostos Ferrosos/química , Compostos Ferrosos/isolamento & purificação , Iminas/química , Metaloproteínas/química , Metaloproteínas/isolamento & purificação , Modelos Moleculares , Estrutura Molecular
6.
Photosynth Res ; 143(3): 301-314, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-31933173

RESUMO

Auracyanin (Ac) is a blue copper protein that mediates the electron transfer between Alternative Complex III (ACIII) and downstream electron acceptors in both fort chains of filamentous anoxygenic phototrophs. Here, we extracted and purified the air-oxidized RfxAc from the photoheterotrophically grown Roseiflexus castenholzii, and we illustrated the structural basis underlying its electron transferring features. Spectroscopic and enzymatic analyses demonstrated the reduction of air-oxidized RfxAc by the ACIII upon oxidation of menaquinol-4 and menaquinol-7. Crystal structures of the air-oxidized and Na-dithionite-reduced RfxAc at 2.2 and 2.0 Å resolutions, respectively, showed that the copper ions are coordinated by His77, His146, Cys141, and Met151 in minor different geometries. The Cu1-Sδ bond length increase of Met151, and the electron density Fourier differences at Cu1 and His77 demonstrated their essential roles in the dithionite-induced reduction. Structural comparisons further revealed that the RfxAc contains a Chloroflexus aurantiacus Ac-A-like copper binding pocket and a hydrophobic patch surrounding the exposed edge of His146 imidazole, as well as an Ac-B-like Ser- and Thr-rich polar patch located at a different site on the surface. These spectroscopic and structural features allow RfxAc to mediate electron transfers between the ACIII and redox partners different from those of Ac-A and Ac-B. These results provide a structural basis for further investigating the electron transfer and energy transformation mechanism of bacterial photosynthesis, and the diversity and evolution of electron transport chains.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Chloroflexi/metabolismo , Cobre/metabolismo , Metaloproteínas/química , Metaloproteínas/metabolismo , Fotossíntese , Sequência de Aminoácidos , Proteínas de Bactérias/isolamento & purificação , Sítios de Ligação , Cobre/química , Ditionita/farmacologia , Transporte de Elétrons/efeitos dos fármacos , Interações Hidrofóbicas e Hidrofílicas , Metaloproteínas/isolamento & purificação , Modelos Moleculares , Naftóis/farmacologia , Oxirredução , Fotossíntese/efeitos dos fármacos , Solventes/química , Homologia Estrutural de Proteína , Relação Estrutura-Atividade
7.
Chembiochem ; 21(12): 1773-1778, 2020 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-31392810

RESUMO

The nitrogenase cofactors are structurally and functionally unique in biological chemistry. Despite a substantial amount of spectroscopic characterization of protein-bound and isolated nitrogenase cofactors, electrochemical characterization of these cofactors and their related species is far from complete. Herein we present voltammetric studies of three isolated nitrogenase cofactor species: the iron-molybdenum cofactor (M-cluster), iron-vanadium cofactor (V-cluster), and a homologue to the iron-iron cofactor (L-cluster). We observe two reductive events in the redox profiles of all three cofactors. Of the three, the V-cluster is the most reducing. The reduction potentials of the isolated cofactors are significantly more negative than previously measured values within the molybdenum-iron and vanadium-iron proteins. The outcome of this study provides insight into the importance of the heterometal identity, the overall ligation of the cluster, and the impact of the protein scaffolds on the overall electronic structures of the cofactors.


Assuntos
Azotobacter vinelandii/química , Técnicas Eletroquímicas , Ferro/metabolismo , Metaloproteínas/metabolismo , Molibdênio/metabolismo , Vanádio/metabolismo , Azotobacter vinelandii/metabolismo , Ferro/química , Ferro/isolamento & purificação , Metaloproteínas/química , Metaloproteínas/isolamento & purificação , Conformação Molecular , Molibdênio/química , Molibdênio/isolamento & purificação , Oxirredução , Vanádio/química , Vanádio/isolamento & purificação
8.
Protein Expr Purif ; 167: 105541, 2020 03.
Artigo em Inglês | MEDLINE | ID: mdl-31756376

RESUMO

Polyhistidine tags (His-tags) are commonly employed in protein purification strategies due to the high affinity and specificity for metal-NTA columns, the relative simplicity of such protocols, and the assumption that His-tags do not affect the native activities of proteins. However, there is a growing body of evidence that such tags can modulate protein structure and function. In this study, we demonstrate that a His-tag impacts DNA complex formation by the C-terminal domain of the α-subunit (αCTD) of Helicobacter pylori RNA polymerase in a metal-dependent fashion. The αCTD was purified with a cleavable His-tag, and complex formation between αCTD, the nickel-responsive metalloregulator HpNikR, and DNA was investigated using electrophoretic mobility shift assays. An interaction between His-tagged αCTD (HisαCTD) and the HpNikR-DNA complex was observed; however, this interaction was not observed upon removal of the His-tag. Further analysis revealed that complex formation between HisαCTD and DNA is non-specific and dependent on the type of metal ions present. Overall, the results indicate that a histidine tag is able to modulate DNA-binding activity and suggests that the impact of metal affinity tags should be considered when analyzing the in vitro biomolecular interactions of metalloproteins.


Assuntos
Proteínas de Ligação a DNA , Etiquetas de Sequências Expressas/química , Helicobacter pylori , RNA Polimerase III/isolamento & purificação , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Ligação a DNA/biossíntese , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/isolamento & purificação , Helicobacter pylori/genética , Helicobacter pylori/metabolismo , Histidina/genética , Íons/metabolismo , Metaloproteínas/biossíntese , Metaloproteínas/química , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Metais/metabolismo , Níquel/metabolismo , RNA Polimerase III/biossíntese , RNA Polimerase III/química , RNA Polimerase III/genética
9.
BMC Res Notes ; 12(1): 597, 2019 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-31533853

RESUMO

OBJECTIVE: Acinetobacter baumanii is a pathogenic bacterium that is the cause of many nosocomial infections. This study aimed to determine metallo-ß-lactamases (MBL) produced by the A. baumanii isolates obtained from clinical samples in Shahrekord, southwest Iran. RESULTS: A total of 100 A. baumanii were isolated from 250 clinical samples between June 2013 and June 2014. Then, the isolates were identified by biochemical tests, and MBL screening was conducted by the phenotypic tests modified Hodge, EDTA-disk synergy (EDS), combined disk (CD) and AmpC disc after antibiotic sensitivity test. Using PCR technique the bla genes were detected. Eighty-five (85%) isolates were resistant to meropenem and imipenem. Phenotypic tests showed that out of the 100 isolates, 46, 59, 50, 65 and 65 isolates were positive: AmpC disk, CD, EDS, Modified Hodge and E-test MBL respectively. Gene detection by PCR showed that 23 isolates carried the VIM-1 gene and only three isolates carried the IMP-1 gene. The prevalence of metallo-ß-lactamases isolates containing A. baumanii is increasing. Furthermore, the coexistence of various carbapenemases is dominantly act as a major problem. Continuous monitoring of the infections related to these bacteria should be considered to plan an alternative and new therapeutic strategies.


Assuntos
Acinetobacter baumannii/enzimologia , Proteínas de Bactérias/metabolismo , Metaloproteínas/metabolismo , beta-Lactamases/metabolismo , Infecções por Acinetobacter/microbiologia , Acinetobacter baumannii/genética , Acinetobacter baumannii/fisiologia , Antibacterianos/farmacologia , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Proteínas de Bactérias/farmacologia , Infecção Hospitalar/microbiologia , Farmacorresistência Bacteriana Múltipla , Genótipo , Imipenem/farmacologia , Irã (Geográfico) , Meropeném/farmacologia , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Testes de Sensibilidade Microbiana , Fenótipo , beta-Lactamases/genética , beta-Lactamases/isolamento & purificação , beta-Lactamases/farmacologia
10.
Sci Rep ; 9(1): 10566, 2019 07 22.
Artigo em Inglês | MEDLINE | ID: mdl-31332224

RESUMO

In an effort to develop an analytical method capable of finding new metalloproteins, this is the first report of a new diagonal gel electrophoresis method to isolate and identify metalloproteins, based on the molecular recognition of holo- and apo-metalloproteins (metalbound and -free forms, respectively) by CBB G-250 dye and employing metal ion contaminant sweeping-blue native-polyacrylamide gel electrophoresis (MICS-BN-PAGE). The difference in electrophoretic mobilities between holo- and apo-forms was exaggerated as a result of interactions between the metalloproteins and the dye with no metal ion dissociation. The different binding modes of proteins with CBB G-250 dye, primarily related to hydrogen bonding, were confirmed by capillary zone electrophoresis (CZE) and molecular docking simulations. Due to in-gel holo/apo conversion between the first and second dimensions of PAGE, holo-metalloproteins in the original sample were completely isolated as spots off the diagonal line in the second dimension of PAGE. To prove the high efficiency of this method for metalloprotein analysis, we successfully identified a copper-binding protein from a total bacterial soluble extract for the first time.


Assuntos
Eletroforese em Gel Bidimensional/métodos , Metaloproteínas/análise , Corantes , Eletroforese Capilar , Humanos , Metaloproteínas/química , Metaloproteínas/isolamento & purificação , Simulação de Acoplamento Molecular
11.
Molecules ; 24(10)2019 May 18.
Artigo em Inglês | MEDLINE | ID: mdl-31109034

RESUMO

Carbon dots (CDs) are fluorescent nanomaterials used extensively in bioimaging, biosensing and biomedicine. This is due in large part to their biocompatibility, photostability, lower toxicity, and lower cost, compared to inorganic quantum dots or organic dyes. However, little is known about the utility of CDs as separation adjuvants in capillary electrophoresis (CE) separations. CDs were synthesized in-house according to a 'bottom-up' method from citric acid or other simple carbon precursors. To demonstrate the applicability of CDs as separation adjuvants, mixtures of holo- (metallated) and apo- (demetallated) forms of transferrin (Tf, an iron transport protein) were analyzed. In the absence of CDs, the proteins were not resolved by a simple CE method; however, upon addition of CDs to the separation buffer, multiple forms of Tf were resolved indicating that CDs are valuable tools to facilitate the separation of analytes by CE. CE parameters including sample preparation, buffer identity, ionic strength, pH, capillary inside diameter, and temperature were optimized. The results suggest that dots synthesized from citric acid provide the best resolution of various different forms of Tf and that CDs are versatile and promising tools to improve current electrophoretic separation methods, especially for metalloprotein analysis.


Assuntos
Carbono , Eletroforese Capilar , Pontos Quânticos , Transferrina/química , Transferrina/isolamento & purificação , Soluções Tampão , Carbono/química , Eletrólitos , Eletroforese Capilar/métodos , Fluorometria , Concentração de Íons de Hidrogênio , Metaloproteínas/química , Metaloproteínas/isolamento & purificação , Temperatura
12.
Protein Expr Purif ; 158: 27-35, 2019 06.
Artigo em Inglês | MEDLINE | ID: mdl-30776426

RESUMO

PbrD is a lead (II) binding protein encoded by the pbr lead resistance operon found exclusively in Cupriavidus metallidurans CH34. Its ability to sequester Pb(II) shows potential for it to be developed as a biosorbent for Pb in the bioremediation of contaminated wastewaters. In this study the pbrD gene from C. metallidurans CH34 was transformed and overexpressed in Escherichia coli BL21 (DE3) using the pET32 Xa/Lic vector. Optimal expression of recombinant (r)PbrD (∼50 kDa) was achieved post-induction with IPTG within inclusion bodies (IBs). Inclusion bodies were solubilised by denaturation and purified by Ni-NTA affinity chromatography. The purified denatured protein containing the N-terminal Trx•Tag™, His•Tag® and S®Tag™ was refolded in vitro via dialysis to a biologically functional form. Circular dichroism spectra of refolded rPbrD-fusion protein indicated a high degree of turns, ß-sheets and 310 helices content and tryptophan fluorescence showed a structural conformational change in the presence of Pb(II). Refolded rPbrD-fusion protein bound 99.7% of Pb(II) when mixed with lead nitrate in ten-fold increasing concentrations. Adsorption isotherms including Langmuir, Freundlich, Temkin and Dubinin-Radushkevich models were applied to determine the biosorption mechanism. A biologically functional rPbrD-fusion protein has potential application in the development of a biosorbent for remediation of Pb(II) from wastewater.


Assuntos
Cupriavidus/química , Chumbo/química , Metaloproteínas , Chaperonas Moleculares , Cupriavidus/genética , Metaloproteínas/biossíntese , Metaloproteínas/química , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Chaperonas Moleculares/biossíntese , Chaperonas Moleculares/química , Chaperonas Moleculares/genética , Chaperonas Moleculares/isolamento & purificação , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação
13.
Int J Biol Macromol ; 124: 810-818, 2019 Mar 01.
Artigo em Inglês | MEDLINE | ID: mdl-30500497

RESUMO

In this work, we studied the effect of the C-terminally attached poly-histidine tag (His-tag), as well as the peculiarities of the protein purification procedure by the immobilized metal affinity chromatography (IMAC) on the activity and structure of the metalloenzyme, l-alanyl-d-glutamate peptidase of bacteriophage T5 (EndoT5), whose zinc binding site and catalytic aspartate are located near the C-terminus. By itself, His-tag did not have a significant effect on either activity or folding of the polypeptide chain, nor on the binding of zinc and calcium ions to the protein. However, the His-tagged EndoT5 samples had low shelf-life, with storage of these samples resulting in an increased propensity for protein self-association and decreased enzymatic activity of EndoT5. Furthermore, disastrous effects on the activity of the enzyme were exerted by the presence of imidazole and nickel ions accompanying metal chelate chromatography. The activity of the protein can be restored by thorough washing off of these low molecular impurities via the prolonged dialysis of the His-tagged EndoT5 samples at the specifically elaborated conditions.


Assuntos
Bacteriófagos/química , Endopeptidases/química , Histidina/química , Metaloproteínas/química , Oligopeptídeos/química , Proteínas Virais/química , Zinco/química , Bacteriófagos/enzimologia , Cálcio/química , Cálcio/metabolismo , Domínio Catalítico , Cátions Bivalentes , Cromatografia de Afinidade , Clonagem Molecular , Diálise/métodos , Endopeptidases/genética , Endopeptidases/isolamento & purificação , Endopeptidases/metabolismo , Ativação Enzimática , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Expressão Gênica , Vetores Genéticos/química , Vetores Genéticos/metabolismo , Histidina/genética , Histidina/metabolismo , Imidazóis/química , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Metaloproteínas/metabolismo , Níquel/química , Oligopeptídeos/genética , Oligopeptídeos/metabolismo , Ligação Proteica , Conformação Proteica , Dobramento de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Proteínas Virais/genética , Proteínas Virais/isolamento & purificação , Proteínas Virais/metabolismo , Zinco/metabolismo
14.
Methods Mol Biol ; 1876: 55-63, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30317474

RESUMO

An overview of modern methods used in the preparation and characterization of molybdenum-containing enzymes is presented, with an emphasis on those methods that have been developed over the past decade to address specific difficulties frequently encountered in studies of these enzymes.


Assuntos
Metaloproteínas/isolamento & purificação , Molibdênio/química , Anaerobiose , Metaloproteínas/química , Metaloproteínas/metabolismo , Oxigênio/metabolismo
15.
Methods Mol Biol ; 1876: 111-124, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30317477

RESUMO

A major hurdle in the studies of nitrogenase, one of the most complicated metalloenzymes known to date, is to obtain large amounts of intact, active proteins. Nitrogenase and related proteins are often multimeric and consist of metal centers that are critical for their activities. Most notably, the well-studied MoFe protein of Mo-nitrogenase is a heterotetramer that houses two of the most complicated metal clusters found in nature, the P-cluster and the FeMoco (or M-cluster). The structural complexity of these proteins and the oxygen sensitivity of their associated metal clusters, along with the demand for large amounts of high-quality proteins in most downstream analyses, make large-scale, high-yield purification of fully competent nitrogenase proteins a formidable task and yet, at the same time, a prerequisite for the success of nitrogenase research. This chapter highlights several methods that have been developed over the past few decades chiefly for the purification of naturally expressed nitrogenase in the diazotroph Azotobacter vinelandii. In addition, purification and Fe-S reconstitution strategies are also outlined for the heterologously expressed nitrogenase proteins in Escherichia coli.


Assuntos
Azotobacter vinelandii/enzimologia , Nitrogenase/química , Nitrogenase/isolamento & purificação , Azotobacter vinelandii/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Cromatografia em Gel , Cromatografia por Troca Iônica , Escherichia coli/genética , Metaloproteínas/química , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Molibdênio/química , Complexos Multienzimáticos/química , Complexos Multienzimáticos/isolamento & purificação , Nitrogenase/genética , Conformação Proteica
16.
Methods Mol Biol ; 1876: 125-140, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-30317478

RESUMO

Nitrogenase-like enzymes play a vital role in the reduction of the conjugated ring systems of diverse tetrapyrrole molecules. The biosynthesis of all bacteriochlorophylls involves the two-electron reduction of the C7-C8 double bond of the green pigment chlorophyllide, which is catalyzed by the nitrogenase-like two-component metalloenzyme chlorophyllide oxidoreductase (COR); whereas in all methanogenic microbes, another nitrogenase-like system, CfbC/D, is responsible for the sophisticated six-electron reduction of Ni2+-sirohydrochlorin a,c-diamide in the course of coenzyme F430 biosynthesis. The first part of this chapter describes the production and purification of the COR components (BchY/BchZ)2 and BchX2, the measurement of COR activity, and the trapping of the ternary COR complex; and the second part describes the strategy for obtaining homogenous and catalytically active preparations of CfbC2 and CfbD2 and a suitable method for extracting the reaction product Ni2+-hexahydrosirohydrochlorin a,c-diamide.


Assuntos
Metaloproteínas/isolamento & purificação , Metaloproteínas/metabolismo , Uroporfirinas/química , Oxirredutases do Álcool/química , Oxirredutases do Álcool/isolamento & purificação , Oxirredutases do Álcool/metabolismo , Domínio Catalítico , Clorofila/biossíntese , Metaloporfirinas/metabolismo , Metaloproteínas/química , Complexos Multienzimáticos , Níquel/química , Oxirredução
17.
Arch Biochem Biophys ; 657: 1-7, 2018 11 01.
Artigo em Inglês | MEDLINE | ID: mdl-30205086

RESUMO

The functional roles of the (His)17 region and an insert region in the eukaryotic nitrile hydratase (NHase, EC 4.2.1.84) from Monosiga brevicollis (MbNHase), were examined. Two deletion mutants, MbNHaseΔ238-257 and MbNHaseΔ219-272, were prepared in which the (His)17 sequence and the entire insert region were removed. Each of these MbNHase enzymes provided an α2ß2 heterotetramer, identical to that observed for prokaryotic NHases and contains their full complement of cobalt ions. Deletion of the (His)17 motif provides an MbNHase enzyme that is ∼55% as active as the WT enzyme when expressed in the absence of the Co-type activator (ε) protein from Pseudonocardia thermophila JCM 3095 (PtNHaseact) but ∼28% more active when expressed in the presence of PtNHaseact. MbNHaseΔ219-272 exhibits ∼55% and ∼89% of WT activity, respectively, when expressed in the absence or presence of PtNHaseact. Proteolytic cleavage of MbNHase provides an α2ß2 heterotetramer that is modestly more active compared to WT MbNHase (kcat = 163 ±â€¯4 vs 131 ±â€¯3 s-1). Combination of these data establish that neither the (His)17 nor the insert region are required for metallocentre assembly and maturation, suggesting that Co-type eukaryotic NHases utilize a different mechanism for metal ion incorporation and post-translational activation compared to prokaryotic NHases.


Assuntos
Coanoflagelados/enzimologia , Hidroliases/química , Metaloproteínas/química , Subunidades Proteicas/química , Sequência de Aminoácidos , Domínio Catalítico , Cobalto/química , Hidroliases/genética , Hidroliases/isolamento & purificação , Cinética , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Mutação , Processamento de Proteína Pós-Traducional , Subunidades Proteicas/genética , Subunidades Proteicas/isolamento & purificação , Proteólise , Alinhamento de Sequência
18.
BMC Res Notes ; 11(1): 213, 2018 Apr 02.
Artigo em Inglês | MEDLINE | ID: mdl-29609633

RESUMO

OBJECTIVE: The human copper-protein ceruloplasmin (Cp) is the major copper-containing protein in the human body. The accurate determination of Cp is mandatory for the reliable diagnosis of several diseases. However, the analysis of Cp has proven to be difficult. The aim of our work was a proof of concept for the determination of a metalloprotein-based on online immunocapture ICP-MS. The immuno-affinity step is responsible for the enrichment and isolation of the analyte from serum, whereas the compound-independent quantitation with ICP-MS delivers the sensitivity, precision, and large dynamic range. Off-line ELISA (enzyme-linked immunosorbent assay) was used in parallel to confirm the elution profile of the analyte with a structure-selective method. The total protein elution was observed with the 32S mass trace. The ICP-MS signals were normalized on a 59Co signal. RESULTS: The human copper-protein Cp could be selectively determined. This was shown with pure Cp and with a sample of human serum. The good correlation with off-line ELISA shows that Cp could be captured and eluted selectively from the anti-Cp affinity column and subsequently determined by the copper signal of ICP-MS.


Assuntos
Ceruloplasmina/análise , Cobre/química , Espectrometria de Massas/métodos , Metaloproteínas/sangue , Ceruloplasmina/química , Ceruloplasmina/isolamento & purificação , Ensaio de Imunoadsorção Enzimática , Humanos , Metaloproteínas/química , Metaloproteínas/isolamento & purificação , Reprodutibilidade dos Testes
19.
Methods Enzymol ; 595: 261-302, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28882203

RESUMO

Nitrogenase is a metalloenzyme system that plays a critical role in biological nitrogen fixation, and the study of how its metallocenters are assembled into functional entities to facilitate the catalytic reduction of dinitrogen to ammonia is an active area of interest. The diazotroph Azotobacter vinelandii is especially amenable to culturing and genetic manipulation, and this organism has provided the basis for many insights into the assembly of nitrogenase proteins and their respective metallocofactors. This chapter will cover the basic procedures necessary for growing A. vinelandii cultures and subsequent recombinant transformation and protein expression techniques. Furthermore, protocols for nitrogenase protein purification and substrate reduction activity assays are described. These methods provide a solid framework for the assessment of nitrogenase assembly and catalysis.


Assuntos
Azotobacter vinelandii/enzimologia , Metaloproteínas/biossíntese , Metaloproteínas/química , Nitrogenase/biossíntese , Nitrogenase/química , Amônia/metabolismo , Azotobacter vinelandii/genética , Azotobacter vinelandii/crescimento & desenvolvimento , Proteínas de Bactérias/biossíntese , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/isolamento & purificação , Biocatálise , Ferro/metabolismo , Metaloproteínas/genética , Metaloproteínas/isolamento & purificação , Molibdoferredoxina/química , Molibdoferredoxina/metabolismo , Nitrogênio/metabolismo , Nitrogenase/genética , Nitrogenase/isolamento & purificação , Conformação Proteica
20.
Anal Bioanal Chem ; 409(26): 6163-6172, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28801743

RESUMO

This work sought to assess optimal extraction conditions in the study of the metalloproteome of the dimorphic fungus Histoplasma capsulatum. One of the body's responses to H. capsulatum infection is sequestration of zinc within host macrophage (MØ), as reported by Vignesh et al. (Immunity 39:697-710, 2013) and Vignesh et al. (PLOS Pathog 9:E1003815, 2013). Thus, metalloproteins containing zinc were of greatest interest as it plays a critical role in survival of the fungus. One challenge in metalloproteomics is the preservation of the native structure of proteins to retain non-covalently bound metals. Many of the conventional cell lysis, separation, and identification techniques in proteomics are carried out under conditions that could lead to protein denaturation. Various cell lysis techniques were investigated in an effort to both maintain the metalloproteins during lysis and subsequent analysis while, at the same time, serving to be strong enough to break the cell wall, allowing access to cytosolic metalloproteins. The addition of 1% Triton x-100, a non-ionic detergent, to the lysis buffer was also studied. Seven lysis methods were considered and these included: Glass Homogenizer (H), Bead Beater (BB), Sonication Probe (SP), Vortex with 1% Triton x-100 (V, T), Vortex with no Triton x-100 (V, NT), Sonication Bath, Vortex, and 1% Triton x-100 (SB, V, T) and Sonication Bath, Vortex, and no Triton x-100 (SB, V, NT). A Qubit® Assay was used to compare total protein concentration and inductively coupled plasma-mass spectrometry (ICP-MS) was utilized for total metal analysis of cell lysates. Size exclusion chromatography coupled to ICP-MS (SEC-HPLC-ICP-MS) was used for separation of the metalloproteins in the cell lysate and the concentration of Zn over a wide molecular weight range was examined. Additional factors such as potential contamination sources were also considered. A cell lysis method involving vortexing H. capsulatum yeast cells with 500 µm glass beads in a 1% Triton x-100 lysis buffer (V, T) was found to be most advantageous to extract intact zinc metalloproteins as demonstrated by the highest Zn to protein ratio, 1.030 ng Zn/µg protein, and Zn distribution among high, mid, and low molecular weights suggesting the least amount of protein denaturation. Graphical abstract In this work, several cell lysis techniques and two lysis buffers were investigated to evaluate the preservation of the zinc metalloproteome of H. capsulatum while maintaining compatibility with the analytical techniques employed.


Assuntos
Proteínas Fúngicas/isolamento & purificação , Histoplasma/química , Metaloproteínas/isolamento & purificação , Zinco/isolamento & purificação , Detergentes/química , Proteínas Fúngicas/química , Histoplasma/citologia , Histoplasmose/microbiologia , Humanos , Metaloproteínas/química , Octoxinol/química , Proteômica/métodos , Sonicação/métodos , Zinco/química
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