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1.
PLoS One ; 15(4): e0231759, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32330150

RESUMO

Ruminant methane production is a significant energy loss to the animal and major contributor to global greenhouse gas emissions. However, it also seems necessary for effective rumen function, so studies of anti-methanogenic treatments must also consider implications for feed efficiency. Between-animal variation in feed efficiency represents an alternative approach to reducing overall methane emissions intensity. Here we assess the effects of dietary additives designed to reduce methane emissions on the rumen microbiota, and explore relationships with feed efficiency within dietary treatment groups. Seventy-nine finishing steers were offered one of four diets (a forage/concentrate mixture supplemented with nitrate (NIT), lipid (MDDG) or a combination (COMB) compared to the control (CTL)). Rumen fluid samples were collected at the end of a 56 d feed efficiency measurement period. DNA was extracted, multiplexed 16s rRNA libraries sequenced (Illumina MiSeq) and taxonomic profiles were generated. The effect of dietary treatments and feed efficiency (within treatment groups) was conducted both overall (using non-metric multidimensional scaling (NMDS) and diversity indexes) and for individual taxa. Diet affected overall microbial populations but no overall difference in beta-diversity was observed. The relative abundance of Methanobacteriales (Methanobrevibacter and Methanosphaera) increased in MDDG relative to CTL, whilst VadinCA11 (Methanomassiliicoccales) was decreased. Trimethylamine precursors from rapeseed meal (only present in CTL) probably explain the differences in relative abundance of Methanomassiliicoccales. There were no differences in Shannon indexes between nominal low or high feed efficiency groups (expressed as feed conversion ratio or residual feed intake) within treatment groups. Relationships between the relative abundance of individual taxa and feed efficiency measures were observed, but were not consistent across dietary treatments.


Assuntos
Ração Animal , Criação de Animais Domésticos/métodos , Microbioma Gastrointestinal/fisiologia , Efeito Estufa/prevenção & controle , Rúmen/microbiologia , Animais , Bovinos , DNA Bacteriano/isolamento & purificação , Gorduras na Dieta/administração & dosagem , Suplementos Nutricionais , Gases de Efeito Estufa/metabolismo , Masculino , Metano/metabolismo , Methanobacteriaceae/genética , Methanobacteriaceae/isolamento & purificação , Methanobacteriaceae/metabolismo , Methanobacteriales/genética , Methanobacteriales/isolamento & purificação , Methanobacteriales/metabolismo , Methanobrevibacter/genética , Methanobrevibacter/isolamento & purificação , Methanobrevibacter/metabolismo , RNA Ribossômico 16S/genética , Rúmen/efeitos dos fármacos , Escócia
2.
Appl Environ Microbiol ; 85(20)2019 10 15.
Artigo em Inglês | MEDLINE | ID: mdl-31420342

RESUMO

Iron sheet piles are widely used in flood protection, dike construction, and river bank reinforcement. Their corrosion leads to gradual deterioration and often makes replacement necessary. Natural deposit layers on these sheet piles can prevent degradation and significantly increase their life span. However, little is known about the mechanisms of natural protective layer formation. Here, we studied the microbially diverse populations of corrosion-protective deposit layers on iron sheet piles at the Gouderak pumping station in Zuid-Holland, the Netherlands. Deposit layers, surrounding sediment and top sediment samples were analyzed for soil physicochemical parameters, microbially diverse populations, and metabolic potential. Methanogens appeared to be enriched 18-fold in the deposit layers. After sequencing, metagenome assembly and binning, we obtained four nearly complete draft genomes of microorganisms (Methanobacteriales, two Coriobacteriales, and Syntrophobacterales) that were highly enriched in the deposit layers, strongly indicating a potential role in corrosion protection. Coriobacteriales and Syntrophobacterales could be part of a microbial food web degrading organic matter to supply methanogenic substrates. Methane-producing Methanobacteriales could metabolize iron, which may initially lead to mild corrosion but potentially stimulates the formation of a carbonate-rich protective deposit layer in the long term. In addition, Methanobacteriales and Coriobacteriales have the potential to interact with metal surfaces via direct interspecies or extracellular electron transfer. In conclusion, our study provides valuable insights into microbial populations involved in iron corrosion protection and potentially enables the development of novel strategies for in situ screening of iron sheet piles in order to reduce risks and develop more sustainable replacement practices.IMPORTANCE Iron sheet piles are widely used to reinforce dikes and river banks. Damage due to iron corrosion poses a significant safety risk and has significant economic impact. Different groups of microorganisms are known to either stimulate or inhibit the corrosion process. Recently, natural corrosion-protective deposit layers were found on sheet piles. Analyses of the microbial composition indicated a potential role for methane-producing archaea. However, the full metabolic potential of the microbial communities within these protective layers has not been determined. The significance of this work lies in the reconstruction of the microbial food web of natural corrosion-protective layers isolated from noncorroding metal sheet piles. With this work, we provide insights into the microbiological mechanisms that potentially promote corrosion protection in freshwater ecosystems. Our findings could support the development of screening protocols to assess the integrity of iron sheet piles to decide whether replacement is required.


Assuntos
Deltaproteobacteria/metabolismo , Ferro/metabolismo , Methanobacteriales/metabolismo , Corrosão , Países Baixos
3.
Curr Issues Mol Biol ; 33: 1-22, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31166183

RESUMO

Aerobic methanotrophs are an intriguing group of microbes with the singular ability to consume methane as their sole source of carbon and energy. As such, methanotrophs are receiving increased attention to control methane emissions to limit future climate change. Methanotrophs have a wide range of other applications, including pollutant remediation and methane valorization (e.g. conversion of methane to protein, bioplastics, and biodiesel amongst other products). Methanotrophs also produce a novel copper-binding compound, methanobactin, that has significant potential for the treatment of copper-related human pathologies. Here we provide an overview of aerobic methanotrophy, describe current and future applications of these unique microbes, as well as discuss various strategies one can consider to better realize the opportunities these microbes present.


Assuntos
Tecnologia Biomédica/métodos , Metabolismo Energético/fisiologia , Recuperação e Remediação Ambiental/métodos , Indústrias/métodos , Metano/metabolismo , Methanobacteriales/metabolismo , Bactérias/metabolismo , Fungos/metabolismo , Regulação Bacteriana da Expressão Gênica , Imidazóis/metabolismo , Methanobacteriales/classificação , Methanobacteriales/fisiologia , Oligopeptídeos/metabolismo
4.
Curr Issues Mol Biol ; 33: 23-56, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31166184

RESUMO

Microorganisms are important players in the global methane cycle. Anaerobic methanogenic archaea are largely responsible for methane production, while aerobic methanotrophic bacteria, as well as anaerobic methanotrophic bacteria and archaea, are involved in methane oxidation. In anoxic wetland soils, methanogens produce methane, while methanotrophs act as a filter and reduce methane emissions. In the predominantly oxic upland soils, aerobic methanotrophs oxidize atmospheric methane. This review gives an overview of the diversity of methanogenic and methanotrophic microorganisms, highlights recent discoveries and provides information concerning their occurrence in soils. Recent findings indicate that the methanogenic and methanotrophic lifestyles are more widespread in microorganisms than previously thought, and that the metabolic versatility of some methane-cycling organisms is broader than known from well characterized cultivated organisms. It also turned out that the control of methanogenic and methanotrophic bacteria by oxygen is more complex than previously thought. The implications this finding may have for the life of these microorganisms in soils and on soil methane fluxes is discussed.


Assuntos
Biodiversidade , Metano/metabolismo , Microbiota/fisiologia , Oxigênio/fisiologia , Microbiologia do Solo , Archaea/classificação , Archaea/metabolismo , Methanobacteriales/classificação , Methanobacteriales/metabolismo , Oxigênio/metabolismo , Solo/química
5.
Curr Issues Mol Biol ; 33: 57-84, 2019.
Artigo em Inglês | MEDLINE | ID: mdl-31166185

RESUMO

Methanotrophic microorganisms utilize methane as an electron donor and a carbon source. To date, the capacity to oxidize methane is restricted to microorganisms from three bacterial and one archaeal phyla. Most of our knowledge of methanotrophic metabolism has been obtained using highly enriched or pure cultures grown in the laboratory. However, many methanotrophs currently evade cultivation, thus metagenomics provides a complementary approach for gaining insight into currently unisolated microorganisms. Here we synthesize the studies using metagenomics to glean information about methanotrophs. We complement this summary with an analysis of methanotroph marker genes from 235 publically available metagenomic datasets. We analyze the phylogenetic and environmental distribution of methanotrophs sampled by metagenomics. We also highlight metabolic insights that methanotroph genomes assembled from metagenomes are illuminating. In summary, metagenomics has increased methanotrophic foliage within the tree of life, as well as provided new insights into methanotroph metabolism, which collectively can guide new cultivation efforts. Lastly, given the importance of methanotrophs for biotechnological applications and their capacity to filter greenhouse gases from a variety of ecosystems, metagenomics will continue to be an important component in the arsenal of tools needed for understanding methanotroph diversity and metabolism in both engineered and natural systems.


Assuntos
Biodiversidade , Metabolismo Energético/genética , Metagenoma , Metano/metabolismo , Microbiota/genética , Microbiologia do Solo , Archaea/classificação , Archaea/genética , Archaea/metabolismo , Metagenoma/genética , Metagenômica/métodos , Methanobacteriales/classificação , Methanobacteriales/genética , Methanobacteriales/metabolismo , Filogenia
6.
Microb Ecol ; 75(3): 811-818, 2018 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-29018917

RESUMO

The red macroalga Asparagopsis taxiformis has been shown to significantly decrease methane production by rumen microbial communities. This has been attributed to the bioaccumulation of halogenated methane analogues produced as algal secondary metabolites. The objective of this study was to evaluate the impact of A. taxiformis supplementation on the relative abundance of methanogens and microbial community structure during in vitro batch fermentation. Addition of A. taxiformis (2% organic matter) or the halogenated methane analogue bromoform (5 µM) reduced methane production by over 99% compared to a basal substrate-only control. Quantitative PCR confirmed that the decrease in methane production was correlated with a decrease in the relative abundance of methanogens. High-throughput 16S ribosomal RNA gene amplicon sequencing showed that both treatments reduced the abundance of the three main orders of methanogens present in ruminants (Methanobacteriales, Methanomassiliicoccales and Methanomicrobiales). Shifts in bacterial community structure due to the addition of A. taxiformis and 5 µM bromoform were similar and concomitant with increases in hydrogen concentration in the headspace of the fermenters. With high potency and broad-spectrum activity against rumen methanogens, A. taxiformis represents a promising natural strategy for reducing enteric methane emissions from ruminant livestock.


Assuntos
Metano/análogos & derivados , Microbiota/efeitos dos fármacos , Rodófitas/metabolismo , Rúmen/microbiologia , Alga Marinha/metabolismo , Animais , Bactérias/classificação , Bactérias/efeitos dos fármacos , Bactérias/metabolismo , DNA Bacteriano/genética , Fermentação , Halogenação , Hidrogênio/metabolismo , Técnicas In Vitro , Gado/microbiologia , Metano/metabolismo , Methanobacteriales/efeitos dos fármacos , Methanobacteriales/metabolismo , Methanomicrobiales/efeitos dos fármacos , Methanomicrobiales/metabolismo , Microbiota/genética , RNA Ribossômico 16S/genética , Trialometanos/farmacologia
7.
PLoS One ; 12(11): e0187858, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-29117259

RESUMO

Dairy cows experience dramatic changes in host physiology from gestation to lactation period and dietary switch from high-forage prepartum diet to high-concentrate postpartum diet over the transition period (parturition +/- three weeks). Understanding the community structure and activity of the rumen microbiota and its associative patterns over the transition period may provide insight for e.g. improving animal health and production. In the present study, rumen samples from ten primiparous Holstein dairy cows were collected over seven weeks spanning the transition period. Total RNA was extracted from the rumen samples and cDNA thereof was subsequently used for characterizing the metabolically active bacterial (16S rRNA transcript amplicon sequencing) and archaeal (qPCR, T-RFLP and mcrA and 16S rRNA transcript amplicon sequencing) communities. The metabolically active bacterial community was dominated by three phyla, showing significant changes in relative abundance range over the transition period: Firmicutes (from prepartum 57% to postpartum 35%), Bacteroidetes (from prepartum 22% to postpartum 18%) and Proteobacteria (from prepartum 7% to postpartum 32%). For the archaea, qPCR analysis of 16S rRNA transcript number, revealed a significant prepartum to postpartum increase in Methanobacteriales, in accordance with an observed increase (from prepartum 80% to postpartum 89%) in relative abundance of 16S rRNA transcript amplicons allocated to this order. On the other hand, a significant prepartum to postpartum decrease (from 15% to 2%) was observed in relative abundance of Methanomassiliicoccales 16S rRNA transcripts. In contrast to qPCR analysis of the 16S rRNA transcripts, quantification of mcrA transcripts revealed no change in total abundance of metabolically active methanogens over the transition period. According to T-RFLP analysis of the mcrA transcripts, two Methanobacteriales genera, Methanobrevibacter and Methanosphaera (represented by the T-RFs 39 and 267 bp), represented more than 70% of the metabolically active methanogens, showing no significant changes over the transition period; minor T-RFs, likely to represent members of the order Methanomassiliicoccales and with a relative abundance below 5% in total, decreased significantly over the transition period. In accordance with the T-RFLP analysis, the mcrA transcript amplicon sequencing revealed Methanobacteriales to cover 99% of the total reads, dominated by the genera Methanobrevibacter (75%) and Methanosphaera (24%), whereas the Methanomassiliicoccales order covered only 0.2% of the total reads. In conclusion, the present study showed that the structure of the metabolically active bacterial and archaeal rumen communities changed over the transition period, likely in response to the dramatic changes in physiology and nutritional factors like dry matter intake and feed composition. It should be noted however that for the methanogens, the observed community changes were influenced by the analyzed gene (mcrA or 16S rRNA).


Assuntos
Bacteroidetes/metabolismo , Firmicutes/metabolismo , Microbioma Gastrointestinal/genética , Methanobacteriales/metabolismo , Proteobactérias/metabolismo , Rúmen/microbiologia , Ração Animal/análise , Bem-Estar do Animal , Animais , Bacteroidetes/classificação , Bacteroidetes/genética , Bacteroidetes/isolamento & purificação , Bovinos , Dieta , Feminino , Firmicutes/classificação , Firmicutes/genética , Firmicutes/isolamento & purificação , Lactação/fisiologia , Methanobacteriales/classificação , Methanobacteriales/genética , Methanobacteriales/isolamento & purificação , Oxirredutases/genética , Parto/fisiologia , Filogenia , Polimorfismo de Fragmento de Restrição , Período Pós-Parto/fisiologia , Gravidez , Análise de Componente Principal , Proteobactérias/classificação , Proteobactérias/genética , Proteobactérias/isolamento & purificação , RNA Ribossômico 16S/genética
8.
Bioresour Technol ; 207: 353-60, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26897414

RESUMO

Several 60L dry batch anaerobic digestion (AD) reactors were implemented with or without liquid reserve on cattle manure. The immersed part modulation of cattle manure increased the methane flow of about 13%. The quantitative real time PCR and the optimized DNA extraction were implemented and validated to characterize and quantify the methanogen dynamic in dry batch AD process. Final quantities of methanogens converged toward the same level in several inocula at the end of AD. Methanogen dynamic was shown by dominance of Methanosarcinaceae for acetotrophic methanogens and Methanobacteriales for the hydrogenotrophic methanogens. Overall, methanogens populations were stabilized in liquid phase, except Methanosaetaceae. Solid phase was colonized by Methanomicrobiales and Methanosarcinaceae populations giving a support to biofilm development. The methane increase could be explained by a raise of Methanosarcinaceae population in presence of a total contact between solid and liquid phases. Methanosarcinaceae was a bio-indicator of the methane production.


Assuntos
Euryarchaeota/metabolismo , Metano/biossíntese , Anaerobiose , Animais , Reatores Biológicos , Bovinos , Euryarchaeota/genética , Esterco , Methanobacteriales/genética , Methanobacteriales/metabolismo , Methanomicrobiales/genética , Methanomicrobiales/metabolismo , Methanosarcinales/genética , Methanosarcinales/metabolismo , RNA Ribossômico 16S/genética , Gerenciamento de Resíduos/métodos
9.
FEMS Microbiol Ecol ; 92(2)2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26712349

RESUMO

Although methanogens were recently discovered to occur in aerated soils, alpine regions have not been extensively studied for their presence so far. Here, the abundance of archaea and the methanogenic guilds Methanosarcinales, Methanococcales, Methanobacteriales, Methanomicrobiales and Methanocella spp. was studied at 16 coniferous forest and 14 grassland sites located at the montane and subalpine belts of the Northern Limestone Alps (calcareous) and the Austrian Central Alps (siliceous) using quantitative real-time PCR. Abundance of archaea, methanogens and the methanogenic potentials were significantly higher in grasslands than in forests. Furthermore, methanogenic potentials of calcareous soils were higher due to pH. Methanococcales, Methanomicrobiales and Methanocella spp. were detected in all collected samples, which indicates that they are autochthonous, while Methanobacteriales were absent from 4 out of 16 forest soils. Methanosarcinales were absent from 10 out of 16 forest soils and 2 out of 14 grassland soils. Nevertheless, together with Methanococcales they represented the majority of the 16S rRNA gene copies quantified from the grassland soils. Contrarily, forest soils were clearly dominated by Methanococcales. Our results indicate a higher diversity of methanogens in well-aerated soils than previously believed and that pH mainly influences their abundances and activities.


Assuntos
Metano/metabolismo , Methanobacteriales/metabolismo , Methanococcales/metabolismo , Methanomicrobiales/metabolismo , Methanosarcinales/metabolismo , Florestas , Pradaria , Methanobacteriales/classificação , Methanobacteriales/genética , Methanococcales/classificação , Methanococcales/genética , Methanomicrobiales/classificação , Methanomicrobiales/genética , Methanosarcinales/classificação , Methanosarcinales/genética , Filogenia , RNA Ribossômico 16S/genética , Reação em Cadeia da Polimerase em Tempo Real , Solo , Microbiologia do Solo
10.
Int J Mol Sci ; 16(10): 23210-26, 2015 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-26404240

RESUMO

The anaerobic digestion of filter cake and its co-digestion with bagasse, and the effect of gradual increase of the organic loading rate (OLR) from start-up to overload were investigated. Understanding the influence of environmental and technical parameters on the development of particular methanogenic pathway in the biogas process was an important aim for the prediction and prevention of process failure. The rapid accumulation of volatile organic acids at high OLR of 3.0 to 4.0 gvs·L⁻¹·day⁻¹ indicated strong process inhibition. Methanogenic community dynamics of the reactors was monitored by stable isotope composition of biogas and molecular biological analysis. A potential shift toward the aceticlastic methanogenesis was observed along with the OLR increase under stable reactor operating conditions. Reactor overloading and process failure were indicated by the tendency to return to a predominance of hydrogenotrophic methanogenesis with rising abundances of the orders Methanobacteriales and Methanomicrobiales and drop of the genus Methanosarcina abundance.


Assuntos
Eliminação de Resíduos/métodos , Saccharum , Resíduos , Anaerobiose , Reatores Biológicos , Methanobacteriales/metabolismo , Methanosarcina/metabolismo
11.
Bioresour Technol ; 189: 370-378, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25913884

RESUMO

Low temperature (<20 °C) limits bio-methanation of sewage. Literature shows that hydrogenotrophic methanogens can adapt themselves to low temperature and methanol is a preferred substrate by methanogens in cold habitats. The study hypothesizes that methanol can induce the growth of low-temperature resilient, methanol utilizing, hydrogenotrophs in UASB reactor. The hypothesis was tested in field conditions to evaluate the impact of seasonal temperature variations on methane yield in the presence and absence of methanol. Results show that 0.04% (v/v) methanol increased methane up to 15 times and its effect was more pronounced at lower temperatures. The qPCR analysis showed the presence of Methanobacteriales along with Methanosetaceae in large numbers. This indicates methanol induced the growth of both the hydrogenotrophic and acetoclastic groups through direct and indirect routes, respectively. This study thus demonstrated that methanol can impart resistance in methanogenic biomass to low temperature and can improve performance of UASB reactor.


Assuntos
Temperatura Baixa , Metano/biossíntese , Methanobacteriales/metabolismo , Metanol/farmacologia , Águas Residuárias/microbiologia , Técnicas de Cultura Celular por Lotes , Análise da Demanda Biológica de Oxigênio , Reatores Biológicos/microbiologia , Methanobacteriales/efeitos dos fármacos , Modelos Teóricos , Reação em Cadeia da Polimerase em Tempo Real , Esgotos/microbiologia , Fatores de Tempo
12.
Biosci Biotechnol Biochem ; 79(8): 1378-83, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25744534

RESUMO

In this study, dual-cylindrical anaerobic digesters were designed and built on the pilot plant scale for the improvement of anaerobic digestion efficiency. The removal efficiency of organics, biogas productivity, yield, and microbial communities was evaluated as performance parameters of the digester. During the stable operational period in the continuous mode, the removal efficiencies of chemical oxygen demand and total solids were 74.1 and 65.1%, respectively. Biogas productivities of 63.9 m(3)/m(3)-FWW and 1.3 m(3)/kg-VSremoved were measured. The hydrogenotrophic methanogen orders, Methanomicrobiales and Methanobacteriales, were predominant over the aceticlastic methanogen order, Methanosarcinaceae, probably due to the tolerance of the hydrogenotrophs to environmental perturbation in the field and their faster growth rate compared with that of the aceticlastics.


Assuntos
Biodegradação Ambiental , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Águas Residuárias , Anaerobiose , Biocombustíveis , Reatores Biológicos , Alimentos , Humanos , Metano/metabolismo , Esgotos
13.
FEMS Microbiol Ecol ; 91(2): 1-10, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25764549

RESUMO

Tank bromeliads are highly abundant epiphytes in neotropical forests and form a unique canopy wetland ecosystem which is involved in the global methane cycle. Although the tropical climate is characterized by high annual precipitation, the plants can face periods of restricted water. Thus, we hypothesized that water is an important controller of the archaeal community composition and the pathway of methane formation in tank bromeliads. Greenhouse experiments were established to investigate the resident and active archaeal community targeting the 16S rDNA and 16S rRNA in the tank slurry of bromeliads at three different moisture levels. Archaeal community composition and abundance were determined using terminal restriction fragment length polymorphism and quantitative PCR. Release of methane and its stable carbon isotopic signature were determined in a further incubation experiment under two moisture levels. The relative abundance of aceticlastic Methanosaetaceae increased up to 34% and that of hydrogenotrophic Methanobacteriales decreased by more than half with decreasing moisture. Furthermore, at low moisture levels, methane production was up to 100-fold lower (≤0.1-1.1 nmol gdw(-1) d(-1)) than under high moisture levels (10-15 nmol gdw(-1) d(-1)). The rapid response of the archaeal community indicates that the pathway of methane formation in bromeliad tanks may indeed be strongly susceptible to periods of drought in neotropical forest canopies.


Assuntos
Metano/metabolismo , Methanobacteriales/metabolismo , Methanosarcinales/metabolismo , Áreas Alagadas , Carbono/metabolismo , Florestas , Metano/biossíntese , Methanobacteriales/genética , Methanosarcinales/genética , Polimorfismo de Fragmento de Restrição , RNA Ribossômico 16S/genética , Clima Tropical , Água
14.
Bioresour Technol ; 155: 342-51, 2014 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-24463413

RESUMO

The two-phase anaerobic co-digestion of cassava dregs (CD) with pig manure (PM) was evaluated using four sequencing batch reactors (SBRs) and a continuously stirred tank reactor (CSTR). The effect of seven different PM to CD volatile solid ratios (10:0, 8:2, 6:4, 5:5, 4:6, 2:8 and 0:10) on the acidification phase was investigated. Results indicated the concentrations of soluble chemical oxygen demand, NH4-N and volatile fatty acids increased substantially at seven ratios. Co-acidification of PM and CD performed well. Methanogenic fermentation of the acidification products at seven ratios was steady in CSTR. The highest methane yield and VS removal of 0.352m(3)/kg VSadded and 68.5% were achieved at PM:CD (4:6). The microbial population in CSTR was analyzed using molecular methods. Findings revealed that bacteria such as Firmicutes and Bacteroidetes, archaea such as Methanobacteriales and Methanomicrobiales were advantageous populations. Co-digestion of PM and CD supported higher quantity and diversity of methanogens.


Assuntos
Bactérias Anaeróbias/metabolismo , Reatores Biológicos , Manihot/metabolismo , Esterco/análise , Amônia/metabolismo , Animais , Bacteroidetes/genética , Bacteroidetes/metabolismo , Sequência de Bases , Análise da Demanda Biológica de Oxigênio , Análise por Conglomerados , Biologia Computacional , Primers do DNA/genética , Eletroforese em Gel de Gradiente Desnaturante , Ácidos Graxos Voláteis/metabolismo , Bactérias Gram-Positivas/genética , Bactérias Gram-Positivas/metabolismo , Concentração de Íons de Hidrogênio , Manihot/química , Metano/biossíntese , Methanobacteriales/genética , Methanobacteriales/metabolismo , Methanomicrobiales/genética , Methanomicrobiales/metabolismo , Dados de Sequência Molecular , Filogenia , Reação em Cadeia da Polimerase , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Suínos
15.
Anaerobe ; 29: 34-43, 2014 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-24384307

RESUMO

Anaerobic fungi occupy the rumen and digestive tract of herbivores, where they play an important role in enzymatic digestion of lignocellulosic and cellulosic substrates, i.e. organic material that their hosts are unable to decompose on their own. In this study we isolated anaerobic fungi from a typical alpine herbivore, the Alpine ibex (C. ibex). Three fungal strains, either as pure culture (ST2) or syntrophic co-culture with methanogens (ST3, ST4) were successfully obtained and morphologically characterised by different microscopy- and staining-techniques and by rDNA ITS gene sequencing. The isolated fungi were identified as Neocallimastix frontalis (ST2) and Caecomyces communis (ST3 and ST4). We introduce a novel field of application for lactofuchsin-staining, combined with confocal laser scanning microscopy. This approach proved as an effective method to visualize fungal structures, especially in the presence of plant biomass, generally exhibiting high autofluorescence. Moreover, we could demonstrate that fungal morphology is subject to changes depending on the carbon source used for cultivation. Oxygen tolerance was confirmed for both, C. communis-cultures for up to three, and for the N. frontalis-isolate for up to 12 h, respectively. With PCR, FISH and an oligonucleotide microarray we found associated methanogens (mainly Methanobacteriales) for C. communis, but not for N. frontalis.


Assuntos
DNA Arqueal/genética , DNA Fúngico/genética , Metano/biossíntese , Methanobacteriales/metabolismo , Neocallimastigomycota/metabolismo , Anaerobiose , Animais , DNA Espaçador Ribossômico/genética , Fezes/microbiologia , Fermentação , Cabras/microbiologia , Methanobacteriales/classificação , Methanobacteriales/genética , Methanobacteriales/isolamento & purificação , Microscopia Confocal , Neocallimastigomycota/classificação , Neocallimastigomycota/genética , Neocallimastigomycota/isolamento & purificação , Filogenia , Reação em Cadeia da Polimerase , Rúmen/microbiologia , Análise de Sequência de DNA , Simbiose/fisiologia
16.
Archaea ; 2013: 346171, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24089597

RESUMO

The feasibility of anaerobic digestion of dairy wastewater at 10°C was investigated in a high height : diameter ratio EGSB reactor. Stable performance was observed at an applied organic loading rate (OLR) of 0.5-2 kg COD m(-3) d(-1) with chemical oxygen demand (COD) removal efficiencies above 85%. When applied OLR increased to values above 2 kg COD m(-3) d(-1), biotreatment efficiency deteriorated, with methanogenesis being the rate-limiting step. The bioreactor recovered quickly (3 days) after reduction of the OLR. qPCR results showed a reduction in the abundance of hydrogenotrophic methanogenic Methanomicrobiales and Methanobacteriales throughout the steady state period followed by a sharp increase in their numbers (111-fold) after the load shock. Specific methanogenic activity and maximum substrate utilising rate (A(max)) of the biomass at the end of trial indicated increased activity and preference towards hydrogenotrophic methanogenesis, which correlated well with the increased abundance of hydrogenotrophic methanogens. Acetoclastic Methanosaeta spp. remained at stable levels throughout the trial. However, increased apparent half-saturation constant (K(m)) at the end of the trial indicated a decrease in the specific substrate affinity for acetate of the sludge, suggesting that Methanosaeta spp., which have high substrate affinity, started to be outcompeted in the reactor.


Assuntos
Reatores Biológicos/microbiologia , Metano/biossíntese , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Águas Residuárias/microbiologia , Anaerobiose , Bacteroidetes/genética , Bacteroidetes/isolamento & purificação , Biomassa , Indústria de Laticínios , Oxigênio/química , Dinâmica Populacional , Proteobactérias/genética , Proteobactérias/isolamento & purificação , RNA Ribossômico 16S/genética , Spirochaetales/genética , Spirochaetales/isolamento & purificação , Águas Residuárias/química
17.
Mikrobiologiia ; 82(6): 723-31, 2013.
Artigo em Russo | MEDLINE | ID: mdl-25509411

RESUMO

At ten stations of the meridian profile in the eastern Kara Sea from the Yenisei estuary through the shallow shelf and further through the St. Anna trough, total microbial numbers (TMN) determined by direct counting, total activity of the microbial community determined by dark CO2 assimilation (DCA), and the carbon isotopic composition of organic matter in suspension and upper sediment horizons (δ13C, per thousand) were investigated. Three horizons were studied in detail: (1) the near-bottom water layer (20-30 cm above the sediment); (2) the uppermost, strongly hydrated sediment horizon, further termed warp (5-10 mm); and (3) the upper sediment horizon (1-5 cm). Due to decrease in the amount of isotopically light carbon of terrigenous origin with increasing distance from the Yenisei estuary, the TMN and DCA values decreased, and the δ13C changed gradually from -29.7 to -23.9 per thousand. At most stations, a noticeable decrease in TMN and DCA values with depth was observed in the water column, while the carbon isotopic composition of suspended organic matter did not change significantly. Considerable changes of all parameters were detected in the interface zone: TMN and DCA increased in the sediments compared to their values in near-bottom water, while the 13C content increased significantly, with δ13C of organic matter in the sediments being at some stations 3.5- 4.0 per thousand higher than in the near-bottom water. Due to insufficient illumination in the near-bottom zone, newly formed isotopically heavy organic matter (δ13C(-) -20 per thousand) could not be formed by photosynthesis, active growth of chemoautotrophic microorganisms in this zone is suggested, which may use reduced sulfur, nitrogen, and carbon compounds diffusing from anaerobic sediments. High DCA values for the interface zone samples confirm this hypothesis. Moreover, neutrophilic sulfur-oxidizing bacteria were retrieved from the samples of this zone.


Assuntos
Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Oceanos e Mares , Microbiologia da Água , Regiões Árticas , Isótopos de Carbono/análise , Isótopos de Carbono/metabolismo , Federação Russa
18.
FEMS Microbiol Ecol ; 83(1): 38-48, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22809020

RESUMO

Methanogenesis from acetate (aceticlastic methanogenesis or syntrophic acetate oxidation (SAO) coupled with hydrogenotrophic methanogenesis) is the most important step for the biogas process. The major environmental factors influencing methanogenesis are volatile fatty acids, ammonia, pH, and temperature. In our study, the effect of acetate and ammonia concentration on the methanogenic pathway from acetate and on the methanogenic communities was elucidated in two experiments: one where inocula were gradually exposed to increasing concentrations of acetate or ammonia, and another with direct exposure to different ammonia concentrations. The methanogenic pathway was determined by following the production of (14) CH(4) and (14) CO(2) from acetate labeled in the methyl group (C-2). Microbial communities' composition was determined by fluorescence in situ hybridization. Upon acclimatization to acetate and ammonia, thermophilic cultures clearly shifted their acetate bioconversion pathway from SAO with subsequent hydrogenotrophic methanogenesis (mediated by Methanobacteriales spp. and/or Methanomicrobiales spp.) to aceticlastic methanogenesis (mediated by Methanosarcinaceae spp.). On the contrary, acclimatization process resulted in no pathway shift with the mesophilic acclimatized culture. When nonacclimatized thermophilic culture was exposed to high ammonia levels (7 g NH4 +-N L(-1)), aceticlastic Methanosarcinaceae spp. was found to be the dominant methanogen.


Assuntos
Ácido Acético/metabolismo , Amônia/metabolismo , Metano/biossíntese , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Methanosarcinaceae/metabolismo , Aclimatação , Biocombustíveis , Hibridização in Situ Fluorescente , Consórcios Microbianos
19.
J Biotechnol ; 161(2): 167-73, 2012 Oct 15.
Artigo em Inglês | MEDLINE | ID: mdl-22542628

RESUMO

Methanogens are of biotechnological interest because of their importance in biogas production. Here we investigate the suitability of sediments from Central Asian soda lakes as inoculum for high pH methane-producing bioreactors. Methane production in these sediments was modest (up to 2.5 µmol mL sediment), with methanol and hydrogen as the preferred substrates. The responsible methanogenic community was characterized based on mcrA gene sequences. McrA gene sequences so far specific to these habitats indicated the presence of two clusters within the orders Methanobacteriales and Methanomicrobiales, one apparently including representatives of the genus Methanocalculus and another distantly related to the genus Methanobacterium.


Assuntos
Sedimentos Geológicos/microbiologia , Lagos/microbiologia , Metano/metabolismo , Methanobacteriales/metabolismo , Methanomicrobiales/metabolismo , Acetatos/química , Reatores Biológicos/microbiologia , Genes Bacterianos , Hidrogênio/química , Concentração de Íons de Hidrogênio , Methanobacteriales/genética , Methanobacteriales/isolamento & purificação , Metanol/química , Methanomicrobiales/genética , Methanomicrobiales/isolamento & purificação , Filogenia , Cloreto de Sódio/química
20.
Biotechnol Bioeng ; 109(11): 2729-36, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-22615033

RESUMO

Biogas produced by anaerobic digestion, is mainly used in a gas motor for heat and electricity production. However, after removal of CO(2) , biogas can be upgraded to natural gas quality, giving more utilization possibilities, such as utilization as autogas, or distant utilization by using the existing natural gas grid. The current study presents a new biological method for biogas upgrading in a separate biogas reactor, containing enriched hydrogenotrophic methanogens and fed with biogas and hydrogen. Both mesophilic- and thermophilic anaerobic cultures were enriched to convert CO(2) to CH(4) by addition of H(2) . Enrichment at thermophilic temperature (55°C) resulted in CO(2) and H(2) bioconversion rate of 320 mL CH(4) /(gVSS h), which was more than 60% higher than that under mesophilic temperature (37°C). Different dominant species were found at mesophilic- and thermophilic-enriched cultures, as revealed by PCR-DGGE. Nonetheless, they all belonged to the order Methanobacteriales, which can mediate hydrogenotrophic methanogenesis. Biogas upgrading was then tested in a thermophilic anaerobic reactor under various operation conditions. By continuous addition of hydrogen in the biogas reactor, high degree of biogas upgrading was achieved. The produced biogas had a CH(4) content, around 95% at steady-state, at gas (mixture of biogas and hydrogen) injection rate of 6 L/(L day). The increase of gas injection rate to 12 L/(L day) resulted in the decrease of CH(4) content to around 90%. Further study showed that by decreasing the gas-liquid mass transfer by increasing the stirring speed of the mixture the CH(4) content was increased to around 95%. Finally, the CH(4) content around 90% was achieved in this study with the gas injection rate as high as 24 L/(L day).


Assuntos
Biocombustíveis/microbiologia , Reatores Biológicos/microbiologia , Dióxido de Carbono/metabolismo , Hidrogênio/metabolismo , Metano/metabolismo , Methanobacteriales/metabolismo , Anaerobiose , Impressões Digitais de DNA , DNA Arqueal/genética , Eletroforese em Gel de Gradiente Desnaturante , Methanobacteriales/classificação , Methanobacteriales/genética , Reação em Cadeia da Polimerase , Temperatura
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