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1.
Pol J Microbiol ; 69(3): 321-330, 2020 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-33574861

RESUMO

Marine obligate actinobacteria produce a wide variety of secondary metabolites with biological activity, notably those with antibiotic activity urgently needed against multi-drug-resistant bacteria. Seventy-five marine actinobacteria were isolated from a marine sediment sample collected in Punta Arena de La Ventana, Baja California Sur, Mexico. The 16S rRNA gene identification, Multi Locus Sequence Analysis, and the marine salt requirement for growth assigned seventy-one isolates as members of the genus Salinispora, grouped apart but related to the main Salinispora arenicola species clade. The ability of salinisporae to inhibit bacterial growth of Staphylococcus epidermidis, Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacer baumannii, Pseudomonas aeruginosa, and Enterobacter spp. was evaluated by cross-streaking plate and supernatant inhibition tests. Ten supernatants inhibited the growth of eight strains of S. epidermidis from patients suffering from ocular infections, two out of the eight showed growth inhibition on ten S. epidermidis strains from prosthetic joint infections. Also, it inhibited the growth of the remaining six multi-drug-resistant bacteria tested. These results showed that some Salinispora strains could produce antibacterial compounds to combat bacteria of clinical importance and prove that studying different geographical sites uncovers untapped microorganisms with metabolic potential.


Assuntos
Bactérias/crescimento & desenvolvimento , Farmacorresistência Bacteriana Múltipla , Sedimentos Geológicos/microbiologia , Micromonosporaceae/fisiologia , Actinobacteria/classificação , Actinobacteria/genética , Actinobacteria/isolamento & purificação , Actinobacteria/fisiologia , Antibacterianos/farmacologia , Antibiose , Bactérias/efeitos dos fármacos , Bactérias/patogenicidade , Proteínas de Bactérias/genética , Meios de Cultivo Condicionados/farmacologia , Farmacorresistência Bacteriana Múltipla/efeitos dos fármacos , Humanos , México , Micromonosporaceae/classificação , Micromonosporaceae/genética , Micromonosporaceae/isolamento & purificação , Filogenia , RNA Ribossômico 16S/genética , Água do Mar/microbiologia
2.
J Antibiot (Tokyo) ; 70(10): 995-999, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28698675

RESUMO

An actinomycete strain, designated MM04-1133T, was isolated from an anthill soil sample collected in Bagan, Myanmar. To establish the taxonomic status of this strain, the isolate was subjected to a polyphasic approach. Strain MM04-1133T was Gram-staining positive, aerobic, motile and formed long and narrow sporangia directly above the surface of the substrate mycelium. Whole-cell hydrolysates of the strain contained 3-OH-diaminopimelic acid, arabinose, glucose, galactose, mannose, rhamnose and xylose. The predominant menaquinones were MK-10(H6) and MK-10(H8). The major cellular fatty acids were iso-C16:0 and anteiso-C17:0. The diagnostic phospholipid was phosphatidylethanolamine. The G+C content of the DNA was 69.1 mol%. Phylogenetic analysis based on 16S rRNA gene sequence revealed that strain MM04-1133T clustered within the genus Virgisporangium, with the sequence exhibiting highest similarity (98.5% identity) with Virgisporangium ochraceum NBRC 16418T. The strain grew in the presence of 0-1% (w/v) NaCl, at pH 5-8 and at 20-40 °C, with optimal growth at 30-37 °C. Based on phylogenetic analysis and chemotaxonomic and phenotypic data, we propose classifying this isolate as a novel species of the genus Virgisporangium, to be designated as Virgisporangium myanmarense sp. nov. The type strain is MM04-1133T (=NBRC 112733T=VTCC 910008T).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Aerobiose , Composição de Bases , Análise por Conglomerados , Citosol/química , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácidos Graxos/análise , Concentração de Íons de Hidrogênio , Locomoção , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Mianmar , Fosfolipídeos/análise , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Cloreto de Sódio/metabolismo , Microbiologia do Solo , Temperatura , Vitamina K 2/análise
3.
ISME J ; 10(2): 478-90, 2016 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-26241505

RESUMO

Although competition, niche partitioning, and spatial isolation have been used to describe the ecology and evolution of macro-organisms, it is less clear to what extent these principles account for the extraordinary levels of bacterial diversity observed in nature. Ecological interactions among bacteria are particularly challenging to address due to methodological limitations and uncertainties over how to recognize fundamental units of diversity and link them to the functional traits and evolutionary processes that led to their divergence. Here we show that two closely related marine actinomycete species can be differentiated based on competitive strategies. Using a direct challenge assay to investigate inhibitory interactions with members of the bacterial community, we observed a temporal difference in the onset of inhibition. The majority of inhibitory activity exhibited by Salinispora arenicola occurred early in its growth cycle and was linked to antibiotic production. In contrast, most inhibition by Salinispora tropica occurred later in the growth cycle and was more commonly linked to nutrient depletion or other sources. Comparative genomics support these differences, with S. arenicola containing nearly twice the number of secondary metabolite biosynthetic gene clusters as S. tropica, indicating a greater potential for secondary metabolite production. In contrast, S. tropica is enriched in gene clusters associated with the acquisition of growth-limiting nutrients such as iron. Coupled with differences in growth rates, the results reveal that S. arenicola uses interference competition at the expense of growth, whereas S. tropica preferentially employs a strategy of exploitation competition. The results support the ecological divergence of two co-occurring and closely related species of marine bacteria by providing evidence they have evolved fundamentally different strategies to compete in marine sediments.


Assuntos
Micromonosporaceae/fisiologia , Água do Mar/microbiologia , Genômica , Sedimentos Geológicos/microbiologia , Micromonosporaceae/classificação , Micromonosporaceae/genética
4.
Antonie Van Leeuwenhoek ; 108(3): 563-9, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-26111852

RESUMO

A Gram-stain positive, non-motile, mesophilic actinomycete, designated strain NEAU-YJC4(T) was isolated from the root of a marigold (Tagetes erecta L.) collected in Heilongjiang Province, northeast China, and characterized using a polyphasic approach. Morphological and chemotaxonomic properties of strain NEAU-YJC4(T) were consistent with the description of the genus Catellatospora. 16S rRNA gene sequence similarity studies showed that strain NEAU-YJC4(T) belongs to the genus Catellatospora, being most closely related to Catellatospora bangladeshensis JCM 12949(T) (98.7 %). Phylogenetic analysis based on 16S rRNA gene sequences demonstrated that strain NEAU-YJC4(T) formed a monophyletic clade with the closest relative. A combination of DNA-DNA hybridization results and some phenotypic characteristics indicated that strain NEAU-YJC4(T) can be distinguished from C. bangladeshensis JCM 12949(T). Therefore, it is proposed that strain NEAU-YJC4(T) represents a novel species of the genus Catellatospora, for which the name Catellatospora tagetis sp. nov. is proposed. The type strain is NEAU-YJC4(T) (=CGMCC 4.7176(T) = JCM 30053(T)).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Raízes de Plantas/microbiologia , Tagetes/microbiologia , Técnicas de Tipagem Bacteriana , China , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
5.
Antonie Van Leeuwenhoek ; 108(1): 191-9, 2015 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-25987396

RESUMO

A novel actinobacterium, designated strain NEAU-TPG4(T) was isolated from rhizosphere soil of Pinus koraiensis Sieb. et Zucc. collected from Luobei, Heilongjiang Province, north China, and characterized using a polyphasic approach. Morphological and chemotaxonomic properties of strain NEAU-TPG4(T) were consistent with the description of the genus Dactylosporangium. The strain formed finger-shaped sporangia on short sporangiophores that emerged directly from substrate hyphae. The cell-wall peptidoglycan consisted of meso- and 3-hydroxy-diaminopimelic acids; arabinose, xylose and glucose were found as whole-cell sugars. The phospholipid profile contained diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and phosphatidylinositol. The predominant menaquinones were identified as MK-9(H8) and MK-9(H6). The predominant cellular fatty acids were identified as iso-C16:0, anteiso-C15:0, anteiso-C17:0 and C18:0. Phylogenetic analysis using 16S rRNA gene sequences also indicated that the strain should be classified in the genus Dactylosporangium and showed that the closest relatives were Dactylosporangium maewongense Japan Collection of Microorganism (JCM) 15933(T) (99.6 %), Dactylosporangium siamense NBRC 106093(T) (99.6 %), Dactylosporangium aurantiacum JCM 3083(T) (99.5 %) and Dactylosporangium luteum JCM 17685(T) (99.5 %). However, the low level of DNA-DNA relatedness and several cultural and physiological characteristics allowed the strain to be distinguished from its closest relatives. Thus, it is proposed that strain NEAU-TPG4(T) represents a novel Dactylosporangium species. Dactylosporangium cerinum sp. nov. The type strain of D. cerinum is NEAU-TPG4(T) (=CGMCC 4.7152(T) = DSM 46712(T)).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Pinus/microbiologia , Rizosfera , Microbiologia do Solo , Carboidratos/análise , Parede Celular/química , China , Análise por Conglomerados , Citosol/química , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácido Diaminopimélico/análise , Ácidos Graxos/análise , Japão , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Peptidoglicano/análise , Fosfolipídeos/análise , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Esporos Bacterianos/citologia , Vitamina K 2/análise
6.
J Antibiot (Tokyo) ; 68(6): 379-84, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25605042

RESUMO

The actinomycete strain RY35-23(T) was isolated from peat swamp forest soil in Thailand. The taxonomic position of this strain was determined using polyphasic approach. Strain RY35-23(T) showed typical morphology and chemical properties similar to the members in the genus Dactylosporangium. On the basis of 16S ribosomal RNA gene analysis, this strain was closely related to Dactylosporangium fulvum JCM 5631(T) (98.94%), D. roseum JCM 3364(T) (98.87%) and D. darangshiense JCM 17441(T) (98.86%). The DNA-DNA relatedness between strain RY35-23(T) and its closely related species was lower than 70%, the cutoff level for assigning strains to the same species. On the basis of these results mentioned, the strain RY35-23(T) could be distinguished from its closely related type strains and represents a novel species of the genus Dactylosporangium, for which the name Dactylosporangium sucinum (type strain RY35-23(T)=JCM 19831(T)=TISTR 2212(T)=PCU 333(T)) is proposed.


Assuntos
Micromonosporaceae/isolamento & purificação , Microbiologia do Solo , Quimiotaxia , Metabolismo Energético , Florestas , Metabolismo dos Lipídeos , Micromonosporaceae/classificação , Micromonosporaceae/crescimento & desenvolvimento , Micromonosporaceae/fisiologia , Microscopia Eletrônica de Varredura , Tipagem Molecular , Filogenia , Esporângios/fisiologia , Esporângios/ultraestrutura , Terminologia como Assunto , Tailândia , Áreas Alagadas
7.
BMC Genomics ; 15: 936, 2014 Oct 25.
Artigo em Inglês | MEDLINE | ID: mdl-25344663

RESUMO

BACKGROUND: Prokaryotic CRISPR-Cas systems confer resistance to viral infection and thus mediate bacteria-phage interactions. However, the distribution and functional diversity of CRISPRs among environmental bacteria remains largely unknown. Here, comparative genomics of 75 Salinispora strains provided insight into the diversity and distribution of CRISPR-Cas systems in a cosmopolitan marine actinomycete genus. RESULTS: CRISPRs were found in all Salinispora strains, with the majority containing multiple loci and different Cas array subtypes. Of the six subtypes identified, three have not been previously described. A lower prophage frequency in S. arenicola was associated with a higher fraction of spacers matching Salinispora prophages compared to S. tropica, suggesting differing defensive capacities between Salinispora species. The occurrence of related prophages in strains from distant locations, as well as spacers matching those prophages inserted throughout spacer arrays, indicate recurring encounters with widely distributed phages over time. Linkages of CRISPR features with Salinispora microdiversity pointed to subclade-specific contacts with mobile genetic elements (MGEs). This included lineage-specific spacer deletions or insertions, which may reflect weak selective pressures to maintain immunity or distinct temporal interactions with MGEs, respectively. Biogeographic patterns in spacer and prophage distributions support the concept that Salinispora spp. encounter localized MGEs. Moreover, the presence of spacers matching housekeeping genes suggests that CRISPRs may have functions outside of viral defense. CONCLUSIONS: This study provides a comprehensive examination of CRISPR-Cas systems in a broadly distributed group of environmental bacteria. The ubiquity and diversity of CRISPRs in Salinispora suggests that CRISPR-mediated interactions with MGEs represent a major force in the ecology and evolution of this cosmopolitan marine actinomycete genus.


Assuntos
Sistemas CRISPR-Cas , Micromonosporaceae/genética , Prófagos/fisiologia , Genes Bacterianos , Variação Genética , Sequências Repetitivas Dispersas , Micromonosporaceae/classificação , Micromonosporaceae/fisiologia , Micromonosporaceae/virologia , Filogeografia , Seleção Genética
8.
Antonie Van Leeuwenhoek ; 106(6): 1185-90, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25261080

RESUMO

A novel actinomycete, designated strain NEAU-SH16(T) was isolated from a soil sample collected from the riverbank of Wusong river in Shanghai and characterized using a polyphasic approach. Morphological and chemotaxonomic properties of strain NEAU-SH16(T) were consistent with the description of the genus Catellatospora. Phylogenetic analysis based on 16S rRNA gene sequences demonstrated that strain NEAU-SH16(T) formed a distinct branch with the closest relatives Catellatospora coxensis DSM 44901(T) (99.2 %) and Catellatospora citrea DSM 44097(T) (99.0 %), an association that was supported by a bootstrap value of 78 % in the neighbour-joining tree and also recovered with the maximum-likelihood algorithm. However, the low level of DNA-DNA relatedness and some different physiological characteristics allowed the strain to be distinguished from its closest relatives. Thus, it is proposed that strain NEAU-SH16(T) represents a novel Catellatospora species. Catellatospora aurea sp. nov. The type strain of Catellatospora aurea is NEAU-SH16(T) (=CGMCC 4.7147(T) = DSM 46719(T)).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , China , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
9.
Antonie Van Leeuwenhoek ; 103(5): 1069-78, 2013 May.
Artigo em Inglês | MEDLINE | ID: mdl-23361994

RESUMO

A polyphasic analysis was carried out to clarify the taxonomic status of four marine actinomycete strains that share a phylogenetic relationship and phenotypic characteristics with the genus Salinispora. These strains formed a distinct lineage within the Salinispora 16S rRNA and gyrB trees and were found to possess a range of phenotypic properties and DNA:DNA hybridization values that distinguished them from the type strains of the two validly named species in this genus, Salinispora tropica (CNB-440(T), ATCC BAA-916(T)) and Salinispora arenicola (CNH-643(T), ATCC BAA-917(T)). The combined genotypic and phenotypic data support this conclusion. It is proposed that the strains be designated as Salinispora pacifica sp. nov., the type strain of which is CNR-114(T) (DSMZ YYYYT = KACC 17160(T)).


Assuntos
Sedimentos Geológicos/microbiologia , Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Técnicas de Tipagem Bacteriana , Análise por Conglomerados , DNA Girase/genética , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Guam , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Palau , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
10.
Antonie Van Leeuwenhoek ; 103(2): 293-8, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23114571

RESUMO

A novel actinomycete, designated strain NEAU-M9(T), was isolated from soybean root (Glycine max (L.) Merr) and characterized using a polyphasic approach. 16S rRNA gene sequence similarity studies showed that strain NEAU-M9(T) belonged to the genus Actinoplanes, being most closely related to Actinoplanes campanulatus DSM 43148(T) (98.85 %), Actinoplanes capillaceus DSM 44859(T) (98.70 %), Actinoplanes lobatus DSM 43150(T) (98.30 %), Actinoplanes auranticolor DSM 43031(T) (98.23 %) and Actinoplanes sichuanensis 03-723(T) (98.06 %); similarity to other type strains of the genus Actinoplanes ranged from 95.87 to 97.56 %. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences showed that the isolate formed a distinct phyletic line with A. campanulatus DSM 43148(T) and A. capillaceus DSM 44859(T). This branching pattern was also supported by the tree constructed with the maximum-likelihood method. However, the low level of DNA-DNA relatedness allowed the isolate to be differentiated from the above-mentioned two Actinoplanes species. Moreover, strain NEAU-M9(T) could also be distinguished from the most closely related species by morphological, physiological and characteristics. Therefore, it is proposed that strain NEAU-M9(T) represents a novel Actinoplanes species, Actinoplanes hulinensis sp. nov. The type strain of Actinoplanes hulinensis is NEAU-M9(T) (= CGMCC 4.7036(T) = DSM 45728(T)).


Assuntos
Glycine max/microbiologia , Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Raízes de Plantas/microbiologia , Técnicas de Tipagem Bacteriana , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Microscopia Eletrônica de Varredura , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
11.
Appl Environ Microbiol ; 78(12): 4175-82, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22492446

RESUMO

Marine actinomycetes in the genus Salinispora fail to grow when seawater is replaced with deionized (DI) water in complex growth media. While bioinformatic analyses have led to the identification of a number of candidate marine adaptation genes, there is currently no experimental evidence to support the genetic basis for the osmotic requirements associated with this taxon. One hypothesis is that the lineage-specific loss of mscL is responsible for the failure of strains to grow in media prepared with DI water. The mscL gene encodes a conserved transmembrane protein that reduces turgor pressure under conditions of acute osmotic downshock. In the present study, the mscL gene from a Micromonospora strain capable of growth on media prepared with DI water was transformed into S. tropica strain CNB-440. The single-copy, chromosomal genetic complementation yielded a recombinant Salinispora mscL(+) strain that demonstrated an increased capacity to survive osmotic downshock. The enhanced survival of the S. tropica transformant provides experimental evidence that the loss of mscL is associated with the failure of Salinispora spp. to grow in low-osmotic-strength media.


Assuntos
Canais Iônicos/metabolismo , Micromonosporaceae/fisiologia , Pressão Osmótica , Estresse Fisiológico , Meios de Cultura/química , Teste de Complementação Genética , Canais Iônicos/genética , Viabilidade Microbiana , Micromonosporaceae/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
12.
Antonie Van Leeuwenhoek ; 101(1): 185-93, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21989685

RESUMO

Verrucosispora isolate AB-18-032(T), the abyssomicin- and proximicin-producing actinomycete, has chemotaxonomic and morphological properties consistent with its classification in the genus Verrucosispora. The organism formed a distinct phyletic line in the Verrucosispora 16S rRNA gene tree sharing similarities of 99.7%, 98.7% and 98.9% with Verrucosispora gifhornensis DSM 44337(T), Verrucosispora lutea YIM 013(T) and Verrucosispora sediminis MS 426(T), respectively. It was readily distinguished from the two latter species using a range of phenotypic features and from V. gifhornensis DSM 44337(T), its nearest phylogenetic neighbor, by a DNA G+C content of 65.5 mol% obtained by thermal denaturation and fluorometry and DNA:DNA relatedness values of 64.0% and 65.0% using renaturation and fluorometric methods, respectively. It is apparent from the combined genotypic and phenotypic data that strain AB-18-032(T) should be classified in the genus Verrucosispora as a new species. The name Verrucosispora maris sp. nov. is proposed for this taxon with isolate AB-18-032(T) (= DSM 45365(T) = NRRL B-24793(T)) as the type strain.


Assuntos
Antibacterianos/metabolismo , Sedimentos Geológicos/microbiologia , Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Aminoácidos/análise , Técnicas de Tipagem Bacteriana , Composição de Bases , Carboidratos/análise , Análise por Conglomerados , Citosol/química , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Peptidoglicano/química , Fosfolipídeos/análise , Filogenia , Quinonas/análise , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
13.
Bioresour Technol ; 103(1): 337-42, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22029955

RESUMO

Acarbose, a potent α-glucosidase inhibitor, is as an oral anti-diabetic drug for treatment of the type two, noninsulin-dependent diabetes. Actinoplanes utahensis ZJB-08196, an osmosis-resistant actinomycete, had a broad osmolality optimum between 309 mOsm kg(-1) and 719 mOsm kg(-1). Utilizing this unique feature, an fed-batch culture process under preferential osmolality was constructed through intermittently feeding broths with feed medium consisting of 14.0 g l(-1) maltose, 6.0 g l(-1) glucose and 9.0 g l(-1) soybean meal, at 48 h, 72 h, 96 h and 120 h. This intermittent fed-batch culture produced a peak acarbose titer of 4878 mg l(-1), increased by 15.9% over the batch culture.


Assuntos
Acarbose/metabolismo , Técnicas de Cultura Celular por Lotes/métodos , Fermentação/fisiologia , Micromonosporaceae/fisiologia , Biomassa , Meios de Cultura/farmacologia , Fermentação/efeitos dos fármacos , Glucose/farmacologia , Maltose/farmacologia , Micromonosporaceae/efeitos dos fármacos , Micromonosporaceae/crescimento & desenvolvimento , Concentração Osmolar , Glutamato de Sódio/farmacologia , Fatores de Tempo
14.
Appl Environ Microbiol ; 77(7): 2559-62, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21296949

RESUMO

Actinoplanes missouriensis spores swim with a tuft of flagella. Flagella of newborn spores are wrapped with a membranous sheath. When the sheath is unwrapped, spores start swimming. Flagellar length is kept short, at around 1.9 µm, which covers half the circumference of the spore.


Assuntos
Flagelos/fisiologia , Flagelos/ultraestrutura , Locomoção , Micromonosporaceae/fisiologia , Micromonosporaceae/ultraestrutura , Esporos Bacterianos/fisiologia , Esporos Bacterianos/ultraestrutura , DNA Bacteriano/química , DNA Bacteriano/genética , Flagelina/genética , Humanos , Dados de Sequência Molecular , Análise de Sequência de DNA
15.
Int J Syst Evol Microbiol ; 61(Pt 6): 1330-1333, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20656820

RESUMO

A Gram-stain-positive, non-motile actinomycete, designated strain YIM 48875(T), was isolated from rhizosphere soil of Bletilla striata and its taxonomic position was established by using a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequence data showed that strain YIM 48875(T) belonged to the genus Planosporangium, supported by a bootstrap value of 100 %. Cells of strain YIM 48875(T) showed two kinds of sporangia, which also supported its classification in the genus Planosporangium. Strain YIM 48875(T) grew optimally at 28 °C, at pH 6.0-8.0 and in the presence of 2 % (w/v) NaCl. The level of 16S rRNA gene sequence similarity between strain YIM 48875(T) and Planosporangium flavigriseum YIM 46034(T) was 98.6 %. Strain YIM 48875(T) exhibited a quinone system with menaquinones MK-9(H(4)), MK-9(H(6)) and MK-9(H(8)) as the predominant compounds, a polar lipid profile comprising diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol mannoside and the major fatty acids iso-C(15 : 0) and iso-C(16 : 0); these data were markedly different from those for P. flavigriseum YIM 46034(T). The level of DNA-DNA relatedness between strain YIM 48875(T) and P. flavigriseum YIM 46034(T) was 45.5 %. It is apparent from the genotypic and phenotypic data that strain YIM 48875(T) represents a novel species of the genus Planosporangium, for which the name Planosporangium mesophilum sp. nov. is proposed. The type strain is YIM 48875(T) ( = CCTCC AA 209049(T)  = KCTC 19779(T)).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Orchidaceae/microbiologia , Rizosfera , Microbiologia do Solo , Análise por Conglomerados , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácidos Graxos/análise , Concentração de Íons de Hidrogênio , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Fosfolipídeos/análise , Filogenia , Quinonas/análise , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Cloreto de Sódio/metabolismo , Temperatura
16.
Int J Syst Evol Microbiol ; 61(Pt 4): 804-809, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-20435743

RESUMO

A novel actinomycete, strain KZ0017(T), was isolated from a forest soil collected in Ohnuma, Fukushima, Japan. Strain KZ0017(T) formed spore chains borne on top of short sporophores arising from vegetative hyphae. Spores were non-motile and cylindrical with smooth surfaces. Strain KZ0017(T) contained meso-diaminopimelic (A(2)pm) acid, 3-OH A(2)pm, d-glutamic acid, glycine and l-alanine in the cell-wall peptidoglycan, and xylose, mannose, galactose, rhamnose and ribose in cell-wall hydrolysates. The acyl type of the cell-wall polysaccharides was glycolyl. The predominant menaquinones were MK-10(H(4)) and MK-10(H(6)); MK-10(H(8)) was a minor component. The polar lipids contained diphosphatidylglycerol, phosphatidylethanolamine, hydroxyphosphatidylethanolamine, phosphatidylinositol and several unknown lipids and glycolipids. The major fatty acids were iso-C(16 : 0), 10-methyl-C(17 : 0) and iso-C(17 : 1)ω9c. The DNA G+C content was 70.7 mol%. The 16S rRNA gene sequence of the isolate formed a monophyletic cluster with the single member of the genus Longispora in the family Micromonosporaceae. On the basis of morphological, chemotaxonomic and phylogenetic properties, strain KZ0017(T) represents a novel species of the genus Longispora, for which the name Longispora fulva sp. nov. is proposed; the type strain is KZ0017(T) ( = NBRC 105670(T) = DSM 45356(T)).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Microbiologia do Solo , Aminoácidos/análise , Composição de Bases , Carboidratos/análise , Parede Celular/química , Análise por Conglomerados , Citoplasma/química , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Ácidos Graxos/análise , Japão , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Fosfolipídeos/análise , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Esporos Bacterianos/citologia , Árvores , Vitamina K 2/análise
17.
FEMS Microbiol Lett ; 313(1): 33-40, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-20883497

RESUMO

Eleven isolates of Mycobacterium species as well as an antimycobacterial Salinispora arenicola strain were cultured from the sponge Amphimedon queenslandica. The 16S rRNA, rpoB, and hsp65 genes from these Mycobacterium isolates were sequenced, and phylogenetic analysis of a concatenated alignment showed the formation of a large clade with Mycobacterium poriferae isolated previously from another sponge species. The separation of these Mycobacterium isolates into three species-level groups was evident from sequence similarity and phylogenetic analyses. In addition, an isolate that is phylogenetically related to Mycobacterium tuberculosis was recovered from the sponge Fascaplysinopsis sp. Several different mycobacteria thus appear to co-occur in the same sponge. An actinobacterium closely related to S. arenicola, a known producer of the antimycobacterial rifamycins, was coisolated from the same A. queenslandica specimen from which mycobacteria had been isolated. This Salinispora isolate was confirmed to synthesize rifamycin and displayed inhibitory effects against representatives from two of three Mycobacterium phylotype groups. Evidence for antagonism of sponge-derived Salinispora against sponge-derived Mycobacterium strains from the same sponge specimen and the production of antimycobacterial antibiotics by this Salinispora strain suggest that the synthesis of such antibiotics may have functions in competition between sponge microbial community members.


Assuntos
Biodiversidade , Micromonosporaceae/fisiologia , Mycobacterium/classificação , Mycobacterium/fisiologia , Poríferos/microbiologia , Animais , RNA Polimerases Dirigidas por DNA/genética , Proteínas de Choque Térmico/genética , Dados de Sequência Molecular , Mycobacterium/genética , Mycobacterium/isolamento & purificação , Filogenia , Policetídeo Sintases/genética , RNA Ribossômico 16S/genética , Rifamicinas/biossíntese
18.
Int J Syst Evol Microbiol ; 60(Pt 7): 1660-1666, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-19734290

RESUMO

Two actinomycete strains, CM2-8(T) and CM2-12, were isolated from temperate peat swamp forest soil in Chiang Mai Province, Thailand. Their taxonomic positions were determined using a polyphasic approach. Chemotaxonomic characteristics of these strains coincided with those of the family Micromonosporaceae, i.e. cell wall chemotype II, N-glycolyl type of muramic acid, and type II phospholipids. Phylogenetic analysis based on 16S rRNA gene sequence data also indicated that these strains fell within the family Micromonosporaceae and formed a distinct taxon in the Micromonosporaceae phylogenetic tree. On the basis of phylogenetic analysis, characteristic patterns of 16S rRNA gene signature nucleotides and chemotaxonomic data, it is proposed that the novel isolates belong to a new genus, Actinaurispora gen. nov. The type species of the genus is proposed as Actinaurispora siamensis sp. nov., with strain CM2-8(T) (=JCM 15677(T)=BCC 34762(T)) as the type strain.


Assuntos
Micromonosporaceae/classificação , Microbiologia do Solo , Sequência de Bases , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Filogenia , RNA Ribossômico 16S/genética
19.
Int J Syst Evol Microbiol ; 60(Pt 4): 919-927, 2010 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-19661505

RESUMO

Two novel actinomycetes, designated MN07-A0368(T) and MN07-A0371(T), were isolated from soil of Terelj, Töv Province, Mongolia, and subjected to phenotypic and genotypic characterization. They produced well-developed, non-fragmenting, extensively branched substrate hyphae from which oval to irregular sporangia were produced. Chemotaxonomic characteristics, i.e. cell wall diaminopimelic acid, whole-cell sugars, fatty acid components and major menaquinones, suggested that the two organisms belonged to the genus Actinoplanes. A comparative analysis of 16S rRNA gene sequences indicated that strains MN07-A0368(T) and MN07-A0371(T) formed a distinct clade within the genus and were closely related to the type strains of: Actinoplanes ferrugineus (97.7 % sequence similarity); Actinoplanes brasiliensis (97.7-97.8 %); Actinoplanes deccanensis (97.6-97.9 %); Actinoplanes durhamensis (96.9-97.0 %); and Actinoplanes globisporus (96.5-96.8 %). Strains MN07-A0368(T) and MN07-A0371(T) could be differentiated from each other and from strains of closely related species of the genus Actinoplanes by DNA-DNA hybridization, physiological and biochemical characteristics, fatty acid composition, and whole-cell sugar components. The broad range of phenotypic and genetic characters supported the suggestion that these strains represent two novel species of the genus Actinoplanes, for which the names Actinoplanes toevensis sp. nov. (type strain MN07-A0368(T)=NBRC 105298(T)=VTCC D9-11(T)) and Actinoplanes tereljensis sp. nov. (type strain MN07-A0371(T)=NBRC 105297(T)=VTCC D9-10(T)) are proposed.


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , Carboidratos/análise , DNA Ribossômico/análise , DNA Ribossômico/genética , Ácidos Graxos/análise , Genes de RNAr , Genótipo , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Mongólia , Hibridização de Ácido Nucleico , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Especificidade da Espécie , Vitamina K 2/análise
20.
Int J Syst Evol Microbiol ; 60(Pt 5): 1200-1205, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-19667384

RESUMO

Morphological and chemotaxonomic characterization of actinomycete strain MW2-25(T), isolated from tropical forest soil in Nakhon Sawan Province, Thailand, clearly demonstrated that this strain belongs to the genus Dactylosporangium. Phylogenetic analysis using 16S rRNA gene sequences also indicated that this strain should be classified in the genus Dactylosporangium and showed that the closest relative was Dactylosporangium aurantiacum IFO 12592(T) (99.3 % sequence similarity). DNA-DNA hybridization values and some physiological and biochemical properties indicated that this strain could be readily distinguished from its closest phylogenetic relatives. On the basis of these phenotypic and genotypic data, this strain represents a novel species, for which the name Dactylosporangium maewongense sp. nov. is proposed. The type strain is MW2-25(T) (=BCC 34832(T)=JCM 15933(T)).


Assuntos
Micromonosporaceae/classificação , Micromonosporaceae/isolamento & purificação , Microbiologia do Solo , Técnicas de Tipagem Bacteriana , DNA Bacteriano/análise , DNA Ribossômico/análise , Genes de RNAr , Genótipo , Micromonosporaceae/genética , Micromonosporaceae/fisiologia , Dados de Sequência Molecular , Hibridização de Ácido Nucleico , Fenótipo , Filogenia , RNA Ribossômico 16S/genética , Análise de Sequência de DNA , Especificidade da Espécie , Tailândia
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