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1.
J Am Chem Soc ; 138(11): 3789-96, 2016 Mar 23.
Artigo em Inglês | MEDLINE | ID: mdl-26966956

RESUMO

Detergents are essential tools for membrane protein manipulation. Micelles formed by detergent molecules have the ability to encapsulate the hydrophobic domains of membrane proteins. The resulting protein-detergent complexes (PDCs) are compatible with the polar environments of aqueous media, making structural and functional analysis feasible. Although a number of novel agents have been developed to overcome the limitations of conventional detergents, most have traditional head groups such as glucoside or maltoside. In this study, we introduce a class of amphiphiles, the PSA/Es with a novel highly branched pentasaccharide hydrophilic group. The PSA/Es conferred markedly increased stability to a diverse range of membrane proteins compared to conventional detergents, indicating a positive role for the new hydrophilic group in maintaining the native protein integrity. In addition, PDCs formed by PSA/Es were smaller and more suitable for electron microscopic analysis than those formed by DDM, indicating that the new agents have significant potential for the structure-function studies of membrane proteins.


Assuntos
Detergentes/química , Proteínas de Membrana/química , Oligossacarídeos de Cadeias Ramificadas/química , Antiporters/análise , Antiporters/química , Proteínas de Arabidopsis/análise , Proteínas de Arabidopsis/química , Sequência de Carboidratos , Detergentes/síntese química , Proteínas de Fluorescência Verde/análise , Proteínas de Fluorescência Verde/química , Interações Hidrofóbicas e Hidrofílicas , Proteínas de Membrana/análise , Micelas , Modelos Moleculares , Oligossacarídeos de Cadeias Ramificadas/síntese química , Proteínas Recombinantes de Fusão/análise , Proteínas Recombinantes de Fusão/química , Espectrometria de Fluorescência , Relação Estrutura-Atividade
2.
Carbohydr Res ; 407: 170-8, 2015 Apr 30.
Artigo em Inglês | MEDLINE | ID: mdl-25812993

RESUMO

A new series of 3'-C-trifluoromethyl- and 3'-C-methyl-ß-d-allopyranonucleosides of 5-fluorouracil and their deoxy derivatives has been designed and synthesized. Treatment of ketosugar 1 with trifluoromethyltrimethylsilane under catalytic fluoride activation and methyl magnesium bromide, gave 1,2:5,6-di-O-isopropylidene-3-C-trifluoromethyl (2a) and 3-C-methyl (2b)-α-D-allofuranose, respectively, in a virtually quantitative yield and with complete stereoselectivity. Hydrolysis followed by acetylation led to the 1,2,4,6-tetra-O-acetyl-3-C-trifluoromethyl (3a) and 3-C-methyl (3b)-ß-D-allopyranose. Compounds 3a,b were then condensed with silylated 5-fluorouracil and deacetylated to afford the target nucleosides 5a,b. Deoxygenation of the peracylated allopyranoses 3a,b followed by condensation with silylated 5-fluorouracil and subsequent deacetylation yielded the target 3'-deoxy-3'-C-trifluoromethyl and 3'-deoxy-3'-C-methyl-ß-d-glucopyranonucleosides 14a,b. The newly synthesized compounds were evaluated for their potential antiviral and cytostatic activities. The 3'-deoxy-3'-C-methyl- ribonucleoside 11b showed significant cytotoxic activity (∼7 µM) almost equally active against a variety of tumor cell lines.


Assuntos
Antivirais/farmacologia , Citostáticos/farmacologia , Nucleosídeos/síntese química , Oligossacarídeos de Cadeias Ramificadas/síntese química , Animais , Antivirais/síntese química , Antivirais/química , Configuração de Carboidratos , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Citostáticos/síntese química , Citostáticos/química , Células HeLa , Humanos , Camundongos , Nucleosídeos/química , Nucleosídeos/farmacologia , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/farmacologia
3.
Proteins ; 82(12): 3466-75, 2014 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-25302425

RESUMO

Engineering of novel carbohydrate-binding proteins that can be utilized in various biochemical and biotechnical applications would benefit from a deeper understanding of the biochemical interactions that determine protein-carbohydrate specificity. In an effort to understand further the basis for specificity we present the crystal structure of the multi-specific carbohydrate-binding module (CBM) X-2 L110F bound to a branched oligomer of xyloglucan (XXXG). X-2 L110F is an engineered CBM that can recognize xyloglucan, xylans and ß-glucans. The structural observations of the present study compared with previously reported structures of X-2 L110F in complex with linear oligomers, show that the π-surface of a phenylalanine, F110, allows for interactions with hydrogen atoms on both linear (xylopentaose and cellopentaose) and branched ligands (XXXG). Furthermore, X-2 L110F is shown to have a relatively flexible binding cleft, as illustrated in binding to XXXG. This branched ligand requires a set of reorientations of protein side chains Q72, N31, and R142, although these residues have previously been determined as important for binding to xylose oligomers by mediating polar contacts. The loss of these polar contacts is compensated for in binding to XXXG by polar interactions mediated by other protein residues, T74, R115, and Y149, which interact mainly with the branching xyloses of the xyloglucan oligomer. Taken together, the present study illustrates in structural detail how CH-π interactions can influence binding specificity and that flexibility is a key feature for the multi-specificity displayed by X-2 L110F, allowing for the accommodation of branched ligands.


Assuntos
Glucanos/química , Lectinas/química , Modelos Moleculares , Oligossacarídeos de Cadeias Ramificadas/química , Xilanos/química , Substituição de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Sítios de Ligação , Configuração de Carboidratos , Endo-1,4-beta-Xilanases/química , Endo-1,4-beta-Xilanases/genética , Endo-1,4-beta-Xilanases/metabolismo , Glucanos/metabolismo , Glicosídeo Hidrolases/química , Glicosídeo Hidrolases/genética , Glicosídeo Hidrolases/metabolismo , Ligação de Hidrogênio , Lectinas/genética , Lectinas/metabolismo , Ligantes , Mutação , Oligossacarídeos de Cadeias Ramificadas/metabolismo , Fenilalanina/química , Conformação Proteica , Engenharia de Proteínas , Estabilidade Proteica , Estrutura Terciária de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Rhodothermus/enzimologia , Xilanos/metabolismo
4.
Carbohydr Polym ; 94(1): 567-76, 2013 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-23544576

RESUMO

GBD-CD2, an engineered sucrose-acting enzyme of glycoside hydrolase family 70, transfers D-glucopyranosyl (D-Glcp) units from sucrose onto dextrans or gluco-oligosaccharides (GOS) through the formation of α-(1→2) linkages leading to branched products of interest for health, food and cosmetic applications. Structural characterization of the branched products obtained from sucrose and pure GOS of degree of polymerization (DP) 4 or DP 5 revealed that highly α-(1→2) branched and new molecular structures can be synthesized by GBD-CD2. The formation of α-(1→2) branching is kinetically controlled and can occur onto vicinal α-(1→6)-linked D-Glcp residues. To investigate the mode of branching of 1.5 kDa dextran, simulations of various branching scenarios and resistance to glucoamylase degradation were performed. Analysis of the simulation results suggests that the branching process is stochastic and indicates that the enzyme acceptor site can accommodate both linear and poly-branched acceptors. This opens the way to the design of novel enzyme-based processes yielding carbohydrate structures varying in size and resistance to hydrolytic enzymes.


Assuntos
Proteínas de Bactérias/química , Dextranos/química , Glucosiltransferases/química , Oligossacarídeos de Cadeias Ramificadas/síntese química , Proteínas de Bactérias/biossíntese , Biocatálise , Configuração de Carboidratos , Sequência de Carboidratos , Cromatografia por Troca Iônica , Glucosiltransferases/biossíntese , Glicosilação , Hidrólise , Dados de Sequência Molecular , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/isolamento & purificação , Espectrometria de Massas por Ionização por Electrospray , Sacarose/química
5.
J Proteome Res ; 12(6): 2779-90, 2013 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-23586857

RESUMO

Cell surface proteins of hyperthermophilic Archaea actively participate in intercellular communication, cellular uptake, and energy conversion to sustain survival strategies in extreme habitats. Surface (S)-layer glycoproteins, the major component of the S-layers in many archaeal species and the best-characterized prokaryotic glycoproteins, were shown to have a large structural diversity in their glycan compositions. In spite of this, knowledge on glycosylation of proteins other than S-layer proteins in Archaea is quite limited. Here, the N-glycosylation pattern of cell-surface-exposed proteins of Sulfolobus solfataricus P2 were analyzed by lectin affinity purification, HPAEC-PAD, and multiple mass spectrometry-based techniques. Detailed analysis of SSO1273, one of the most abundant ABC transporters present in the cell surface fraction of S. solfataricus, revealed a novel glycan structure composed of a branched sulfated heptasaccharide, Hex4(GlcNAc)2 plus sulfoquinovose where Hex is d-mannose and d-glucose. Having one monosaccharide unit more than the glycan of the S-layer glycoprotein of S. acidocaldarius, this is the most complex archaeal glycan structure known today. SSO1273 protein is heavily glycosylated and all 20 theoretical N-X-S/T (where X is any amino acid except proline) consensus sequence sites were confirmed. Remarkably, we show that several other proteins in the surface fraction of S. solfataricus are N-glycosylated by the same sulfated oligosaccharide and we identified 56 N-glycosylation sites in this subproteome.


Assuntos
Transportadores de Cassetes de Ligação de ATP/isolamento & purificação , Proteínas Arqueais/isolamento & purificação , Glicoproteínas de Membrana/isolamento & purificação , Oligossacarídeos de Cadeias Ramificadas/isolamento & purificação , Sulfolobus solfataricus/química , Transportadores de Cassetes de Ligação de ATP/química , Sequência de Aminoácidos , Proteínas Arqueais/química , Sequência de Carboidratos , Cromatografia de Afinidade , Glicosilação , Lectinas/química , Espectrometria de Massas , Glicoproteínas de Membrana/química , Dados de Sequência Molecular , Oligossacarídeos de Cadeias Ramificadas/química
6.
FEBS J ; 280(1): 285-301, 2013 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-23167779

RESUMO

A minor xylanase, named XYN IV, was purified from the cellulolytic system of the fungus Trichoderma reesei Rut C30. The enzyme was discovered on the basis of its ability to attack aldotetraohexenuronic acid (HexA-2Xyl-4Xyl-4Xyl, HexA(3)Xyl(3)), releasing the reducing-end xylose residue. XYN IV exhibited catalytic properties incompatible with previously described endo-ß-1,4-xylanases of this fungus, XYN I, XYN II and XYN III, and the xylan-hydrolyzing endo-ß-1,4-glucanase EG I. XYN IV was able to degrade several different ß-1,4-xylans, but was inactive on ß-1,4-mannans and ß-1,4-glucans. It showed both exo-and endo-xylanase activity. Rhodymenan, a linear soluble ß-1,3-ß-1,4-xylan, was as the best substrate. Linear xylooligosaccharides were attacked exclusively at the first glycosidic linkage from the reducing end. The gene xyn4, encoding XYN IV, was also isolated. It showed clear homology with xylanases classified in glycoside hydrolase family 30, which also includes glucanases and mannanases. The xyn4 gene was expressed slightly when grown on xylose and xylitol, clearly on arabinose, arabitol, sophorose, xylobiose, xylan and cellulose, but not on glucose or sorbitol, resembling induction of other xylanolytic enzymes from T. reesei. A recombinant enzyme prepared in a Pichia pastoris expression system exhibited identical catalytic properties to the enzyme isolated from the T. reesei culture medium. The physiological role of this unique enzyme remains unknown, but it may involve liberation of xylose from the reducing end of branched oligosaccharides that are resistant toward ß-xylosidase and other types of endoxylanases. In terms of its catalytic properties, XYN IV differs from bacterial GH family 30 glucuronoxylanases that recognize 4-O-methyl-D-glucuronic acid (MeGlcA) substituents as substrate specificity determinants.


Assuntos
Endo-1,4-beta-Xilanases/química , Proteínas Fúngicas/química , Trichoderma/enzimologia , Sequência de Aminoácidos , Configuração de Carboidratos , Endo-1,4-beta-Xilanases/biossíntese , Endo-1,4-beta-Xilanases/isolamento & purificação , Proteínas Fúngicas/biossíntese , Proteínas Fúngicas/isolamento & purificação , Regulação Fúngica da Expressão Gênica , Glucuronatos/química , Hidrólise , Cinética , Dados de Sequência Molecular , Oligossacarídeos/química , Oligossacarídeos de Cadeias Ramificadas/química , Pichia , Análise de Sequência de DNA , Homologia de Sequência de Aminoácidos , Especificidade por Substrato , Xilanos/química
7.
J Biol Chem ; 287(34): 28666-74, 2012 Aug 17.
Artigo em Inglês | MEDLINE | ID: mdl-22740701

RESUMO

N-acetyllactosamine is the most prevalent disaccharide moiety in the glycans on the surface of mammalian cells and often found as repeat units in the linear and branched polylactosamines, known as i- and I-antigen, respectively. The ß1-4-galactosyltransferase-I (ß4Gal-T1) enzyme is responsible for the synthesis of the N-acetyllactosamine moiety. To understand its oligosaccharide acceptor specificity, we have previously investigated the binding of tri- and pentasaccharides of N-glycan with a GlcNAc at their nonreducing end and found that the extended sugar moiety in these acceptor substrates binds to the crevice present at the acceptor substrate binding site of the ß4Gal-T1 molecule. Here we report seven crystal structures of ß4Gal-T1 in complex with an oligosaccharide acceptor with a nonreducing end GlcNAc that has a ß1-6-glycosidic link and that are analogous to either N-glycan or i/I-antigen. In the crystal structure of the complex of ß4Gal-T1 with I-antigen analog pentasaccharide, the ß1-6-branched GlcNAc moiety is bound to the sugar acceptor binding site of the ß4Gal-T1 molecule in a way similar to the crystal structures described previously; however, the extended linear tetrasaccharide moiety does not interact with the previously found extended sugar binding site on the ß4Gal-T1 molecule. Instead, it interacts with the different hydrophobic surface of the protein molecule formed by the residues Tyr-276, Trp-310, and Phe-356. Results from the present and previous studies suggest that ß4Gal-T1 molecule has two different oligosaccharide binding regions for the binding of the extended oligosaccharide moiety of the acceptor substrate.


Assuntos
Acetilglucosamina/química , Oligossacarídeos de Cadeias Ramificadas/química , Acetilglucosamina/metabolismo , Sítios de Ligação , Cristalografia por Raios X , Galactosiltransferases , Humanos , Interações Hidrofóbicas e Hidrofílicas , Oligossacarídeos de Cadeias Ramificadas/metabolismo , Estrutura Terciária de Proteína
9.
Glycobiology ; 22(3): 352-60, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-21921061

RESUMO

It is now emerging the new concept that the antibodies from some patients with Guillain-Barré syndrome (GBS) recognize an antigenic epitope formed by two different gangliosides, a ganglioside complex (GSC). We prepared the dimeric GM1-GD1a hybrid ganglioside derivative that contains two structurally different oligosaccharide chains to mimic the GSC. We use this compound to analyze sera from GBS patients by high-performance thin-layer chromatography immunostaining and enzyme-linked immunosorbent assay. We also synthesized the dimeric GM1-GM1 and GD1a-GD1a compounds that were used in control experiments together with natural gangliosides. The hybrid dimeric GM1-GD1a was specifically recognized by human sera from GBS patients that developed anti-oligosaccharide antibodies specific for grouped complex oligosaccharides, confirming the information that GBS patients developed antibodies against a GSC. High-resolution (1)H-(13)C heteronuclear single-quantum coherence-nuclear overhauser effect spectroscopy nuclear magnetic resonance experiments showed an interaction between the IV Gal-H1 of GM1 and the IV Gal-H2 of GD1a suggesting that the two oligosaccharide chains of the dimeric ganglioside form a single epitope recognized by a single-antibody domain. The availability of a method capable to prepare several hybrid gangliosides, and the availability of simple analytical approaches, opens new perspectives for the understanding and the therapy of several neuropathies.


Assuntos
Gangliosídeo G(M1)/imunologia , Gangliosídeos/imunologia , Síndrome de Guillain-Barré/sangue , Autoantígenos/química , Autoantígenos/imunologia , Configuração de Carboidratos , Sequência de Carboidratos , Cromatografia em Camada Fina , Ensaio de Imunoadsorção Enzimática , Epitopos/química , Epitopos/imunologia , Gangliosídeo G(M1)/química , Gangliosídeos/química , Síndrome de Guillain-Barré/imunologia , Humanos , Imunoglobulina G/sangue , Imunoglobulina G/química , Dados de Sequência Molecular , Oligossacarídeos , Oligossacarídeos de Cadeias Ramificadas/síntese química , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/imunologia , Ligação Proteica , Soro
10.
Mass Spectrom Rev ; 30(4): 560-78, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21656841

RESUMO

Oligosaccharides play important roles in many biological processes. However, the structural elucidation of oligosaccharides remains a major challenge due to the complexities of their structures. Mass spectrometry provides a powerful method for determining oligosaccharide composition. Tandem mass spectrometry (MS) provides structural information with high sensitivity. Oligosaccharide structures differ from other polymers such as peptides because of the large number of linkage combinations and branching. This complexity makes the analysis of oligosaccharide unique from that of peptides. This tutorial addresses the issue of spectral interpretation of tandem MS under conditions of collision-induced dissociation (CID) and infrared multiphoton dissociation (IRMPD). The proper interpretation of tandem MS data can provide important structural information on different types of oligosaccharides including O- and N-linked.


Assuntos
Sequência de Carboidratos , Oligossacarídeos de Cadeias Ramificadas/química , Espectrometria de Massas em Tandem/métodos , Configuração de Carboidratos , Glicopeptídeos/química , Glicoproteínas/química , Raios Infravermelhos , Espectroscopia de Infravermelho com Transformada de Fourier
11.
J Agric Food Chem ; 59(9): 4962-8, 2011 May 11.
Artigo em Inglês | MEDLINE | ID: mdl-21452803

RESUMO

Branched oligosaccharide phosphate (BOS-P) and oleyl BOS-P (OA-BOS-P) were prepared from potato starch with a high phosphate content by limited amylolysis with α-amylase and exhaustive digestion with glucoamylase and oleylation of BOS-P through a lipase-catalyzed solid-phase synthesis. The multifunctional properties of OA-BOS-P were evaluated in terms of surface tension, emulsifying ability, Ca(2+)-binding ability, and ability to control the gelatinization and retrogradation of potato starch. OA-BOS-P exhibited better emulsifying ability than BOS-P and Ca(2+)-binding ability similar to that of BOS-P. OA-BOS-P elevated the gelatinization temperature and reduced viscosity more than BOS-P. OA-BOS-P also reduced retrogradation as indicated by the reduction in the setback viscosity, turbidity, development of the ordered structure and crystalline structure, and digestibility, whereas BOS-P elevated the setback and turbidness, despite reducing the development of the crystalline structure, except for development of the ordered structure, similar to that of the control. These results show that OA-BOS-P could be a useful material with novel emulsifying, Ca(2+)-binding, and starchy food-controlling properties.


Assuntos
Oligossacarídeos de Cadeias Ramificadas/química , Fosfatos/análise , Solanum tuberosum/química , Amido/química , Configuração de Carboidratos , Viscosidade
12.
Biochem Soc Trans ; 39(1): 370-3, 2011 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21265806

RESUMO

Melanoma, which is one of the most aggressive human tumours, originates from melanin-producing melanocytes. As no effective systemic therapy exists for advanced-stage melanoma, the best chance of recovery remains surgical removal of thin early-stage melanoma. Aberrant glycosylation is a hallmark of malignancy and a well-studied class of ß1,6-branched oligosaccharides is associated with malignant transformation of rodent and human cells, and poor prognosis in cancer patients. It is evident that increased ß1,6 branching significantly contributes to the phenotype of melanoma cells, influencing the adhesion to extracellular matrix components and motility as well as invasive and metastatic potential. Despite the considerable success in establishing the role of ß1,6-branched N-linked oligosaccharides in melanoma biology, there is virtually no progress in using these glycans as a screening tool for the early diagnosis of the disease, or a target-specific therapeutic agent.


Assuntos
Melanoma/diagnóstico , Melanoma/metabolismo , Oligossacarídeos de Cadeias Ramificadas/metabolismo , Polissacarídeos/metabolismo , Neoplasias Cutâneas/diagnóstico , Neoplasias Cutâneas/metabolismo , Animais , Transformação Celular Neoplásica , Detecção Precoce de Câncer , Glicosilação , Humanos , Melanoma/química , Melanoma/patologia , Oligossacarídeos de Cadeias Ramificadas/química , Polissacarídeos/química , Prognóstico , Neoplasias Cutâneas/química , Neoplasias Cutâneas/patologia
13.
Chemistry ; 17(5): 1547-60, 2011 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-21268157

RESUMO

The structural and affinity details of the interactions of synthetic oligomannosides, linear (di-, tri-, and tetra-) and branched (penta- and hepta-), with the broadly neutralizing anti-HIV-1 antibody 2G12 (HIV=human immunodeficiency virus) have been investigated in solution by using ligand-based NMR techniques, specifically saturation transfer difference (STD) NMR spectroscopy and transferred NOE experiments. Linear oligomannosides show similar binding modes to the antibody, with the nonreducing terminal disaccharide Manα(1→2)Man (Man=mannose) making the closest protein/ligand contacts in the bound state. In contrast, the branched pentamannoside shows two alternate binding modes, involving both ligand arms (D2- and D3-like), a dual binding description of the molecular recognition of this ligand by 2G12 in solution that differs from the single binding mode deduced from X-ray studies. On the contrary, the antibody shows an unexpected selectivity for one arm (D1-like) of the other branched ligand (heptamannoside). This result explains the previously reported lack of affinity enhancement relative to that of the D1-like tetramannoside. Single-ligand STD NMR titration experiments revealed noticeable differences in binding affinities among the linear and branched ligands in solution, with the latter showing decreased affinity. Among the analyzed series of ligands, the strongest 2G12 binders were the linear tri- and tetramannosides because both show similar affinity for the antibody. These results demonstrate that NMR spectroscopic techniques can deliver abundant structural, dynamics, and affinity information for the characterization of oligomannose-2G12 binding in solution, thus complementing, and, as in the case of the pentamannoside, extending, the structural view from X-ray crystallography. This information is of key importance for the development of multivalent synthetic gp120 high-mannose glycoconjugate mimics in the context of vaccine development.


Assuntos
Anticorpos Monoclonais/química , Glicoconjugados/química , Anticorpos Anti-HIV/química , Proteína gp120 do Envelope de HIV/química , HIV-1/química , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos/química , Sequência de Aminoácidos , Anticorpos Monoclonais/imunologia , Sítios de Ligação de Anticorpos , Anticorpos Amplamente Neutralizantes , Sequência de Carboidratos , Cristalografia por Raios X , Glicoconjugados/imunologia , Anticorpos Anti-HIV/imunologia , Proteína gp120 do Envelope de HIV/imunologia , Proteína gp120 do Envelope de HIV/metabolismo , HIV-1/imunologia , Humanos , Ligantes , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular , Estrutura Molecular
14.
Glycobiology ; 21(4): 530-42, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21106559

RESUMO

Glycosylation analysis of nonmammalian sources often springs surprises and conjures up intriguing views of evolutionary adaptation. Many of the constituents of snake venoms are known to be glycosylated and yet very few were fully characterized and accorded specific functions. In the process of glycomic screening through the venoms from Asian pit vipers, a partially O-acetylated NeuAcα2-8NeuAcα2-3Galß1-4GlcNAcß1-terminal epitope was found to be the predominant glycosylation characteristic of the snake venom produced by the monotypic Deinagkistrodon acutus, with acutobin, a highly specific fibrinogenase, being identified as a primary protein carrier. Full structural definition and glycosylation site mapping were completed through advanced mass spectrometry analyses at both the glycan and glycopeptide levels in conjunction with chemical and enzymatic cleavages. Although similar occurrence of such terminal disialyl cap on the N-glycans of several mammalian glycoproteins has been implicated, most of these correspond to only minor constituents of the full glycomic heterogeneity and remain poorly characterized. In contrast, each antennae of the hybrid- and complex-type N-glycans derived from acutobin was found to be rather homogeneously disialylated. With up to eight sialic acids evenly distributed on nonextended tetraantennary core structure, these unusual N-glycans are among those of highest sialic acid density ever identified without actually carrying polysialic acid chains. It remains to be tested whether they may serve as multivalent disialyl ligands for several of the human Siglecs and thus meddle with the natural immuno-recognition systems of snakebite victims, apart from affecting the general efficacy of acutobin as anticoagulant in biomedical applications.


Assuntos
Venenos de Crotalídeos/metabolismo , Crotalus , Polissacarídeos/metabolismo , Ácidos Siálicos/metabolismo , Trombina/metabolismo , Sequência de Aminoácidos , Amino Açúcares/química , Amino Açúcares/metabolismo , Animais , Sequência de Carboidratos , Venenos de Crotalídeos/química , Venenos de Crotalídeos/isolamento & purificação , Glicosilação , Humanos , Dados de Sequência Molecular , Oligossacarídeos/química , Oligossacarídeos/metabolismo , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/metabolismo , Polissacarídeos/química , Processamento de Proteína Pós-Traducional , Ácidos Siálicos/química , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz , Espectrometria de Massas em Tandem , Trombina/química , Trombina/isolamento & purificação
15.
Immunobiology ; 216(1-2): 126-31, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-20674073

RESUMO

Diabetic complications include infection and cardiovascular disease. Within the immune system, host-pathogen and regulatory host-host interactions operate through binding of oligosaccharides by C-type lectin. A number of C-type lectins recognise oligosaccharides rich in mannose and fucose - sugars with similar structures to glucose. This raises the possibility that high glucose conditions in diabetes affect protein-oligosaccharide interactions via competitive inhibition. Mannose-binding lectin, soluble DC-SIGN and DC-SIGNR, and surfactant protein D, were tested for carbohydrate binding in the presence of glucose concentrations typical of diabetes, via surface plasmon resonance and affinity chromatography. Complement activation assays were performed in high glucose. DC-SIGN and DC-SIGNR expression in adipose tissues was examined via immunohistochemistry. High glucose inhibited C-type lectin binding to high-mannose glycoprotein and binding of DC-SIGN to fucosylated ligand (blood group B) was abrogated in high glucose. Complement activation via the lectin pathway was inhibited in high glucose and also in high trehalose - a nonreducing sugar with glucoside stereochemistry. DC-SIGN staining was seen on cells with DC morphology within omental and subcutaneous adipose tissues. We conclude that high glucose disrupts C-type lectin function, potentially illuminating new perspectives on susceptibility to infectious and inflammatory disease in diabetes. Mechanisms involve competitive inhibition of carbohydrate binding within sets of defined proteins, in contrast to broadly indiscriminate, irreversible glycation of proteins.


Assuntos
Moléculas de Adesão Celular/metabolismo , Células Dendríticas/metabolismo , Glucose/metabolismo , Lectinas Tipo C/metabolismo , Lectina de Ligação a Manose/metabolismo , Oligossacarídeos de Cadeias Ramificadas/metabolismo , Receptores de Superfície Celular/metabolismo , Tecido Adiposo/patologia , Infecções Bacterianas , Ligação Competitiva/imunologia , Moléculas de Adesão Celular/genética , Lectina de Ligação a Manose da Via do Complemento , Células Dendríticas/imunologia , Células Dendríticas/patologia , Complicações do Diabetes , Glucose/química , Interações Hospedeiro-Patógeno , Humanos , Imunidade Inata , Imuno-Histoquímica , Imunomodulação , Lectinas Tipo C/genética , Lectina de Ligação a Manose/genética , Lectina de Ligação a Manose/imunologia , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/imunologia , Receptores de Superfície Celular/genética , Estereoisomerismo , Ressonância de Plasmônio de Superfície
16.
FEBS J ; 277(14): 2970-86, 2010 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-20546307

RESUMO

Urine, amniotic fluid and ascitic fluid samples of galactosialidosis patients were analyzed and structurally characterized for free oligosaccharides using capillary high-performance anion-exchange chromatography with pulsed amperometric detection and online mass spectrometry. In addition to the expected endo-beta-N-acetylglucosaminidase-cleaved products of complex-type sialylated N-glycans, O-sulfated oligosaccharide moieties were detected. Moreover, novel carbohydrate moieties with reducing-end hexose residues were detected. On the basis of structural features such as a hexose-N-acetylhexosamine-hexose-hexose consensus sequence and di-sialic acid units, these oligosaccharides are thought to represent, at least in part, glycan moieties of glycosphingolipids. In addition, C(1)-oxidized, aldohexonic acid-containing versions of most of these oligosaccharides were observed. These observations suggest an alternative catabolism of glycosphingolipids in galactosialidosis patients: oligosaccharide moieties from glycosphingolipids would be released by a hitherto unknown ceramide glycanase activity. The results show the potential and versatility of the analytical approach for structural characterization of oligosaccharides in various body fluids.


Assuntos
Líquido Amniótico/química , Líquido Ascítico/química , Doenças por Armazenamento dos Lisossomos/metabolismo , Doenças por Armazenamento dos Lisossomos/urina , Neuraminidase/deficiência , Oligossacarídeos/análise , beta-Galactosidase/deficiência , Sequência de Carboidratos , Catepsina A/genética , Cromatografia por Troca Iônica , Feto/metabolismo , Glicosídeo Hidrolases/metabolismo , Glicoesfingolipídeos/metabolismo , Hexoses/análise , Humanos , Lactente , Recém-Nascido/metabolismo , Recém-Nascido/urina , Doenças por Armazenamento dos Lisossomos/genética , Espectrometria de Massas , Dados de Sequência Molecular , Oligossacarídeos/química , Oligossacarídeos/urina , Oligossacarídeos de Cadeias Ramificadas/análise , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/urina , Açúcares Ácidos/análise , Urina/química
17.
Biochem Biophys Res Commun ; 397(1): 87-92, 2010 Jun 18.
Artigo em Inglês | MEDLINE | ID: mdl-20493171

RESUMO

The transglycosylation reaction of maltodextrin glucosidase (MalZ) cloned and purified from Escherichia coli K12 was characterized and applied to the synthesis of branched oligosaccharides. Purified MalZ preferentially catalyzed the hydrolysis of maltodextrin, gamma-cyclodextrin (CD), and cycloamylose (CA). In addition, when the enzyme was incubated with 5% maltotriose (G3), a series of transfer products were produced. The resulting major transfer products, annotated as T1, T2, and T3, were purified and their structures were determined by TLC, MALDI-TOF/MS, (13)C NMR, and enzymatic analysis. T1 was identified as a novel compound, maltosyl alpha-1,3-maltose, whereas T2 and T3 were determined to be isopanose and maltosyl-alpha-1,6-maltose, respectively. These results indicated that MalZ transferred sugar moiety mainly to C-3 or C-6-OH of glucose of the acceptor molecule. To obtain highly concentrated transfer products, the enzyme was reacted with 10% liquefied cornstarch, and then glucose and maltose were removed by immobilized yeast. The T1 content of the resulting reaction mixture reached 9.0%. The mixture of T1 containing a nigerose moiety can have an immunopotentiating effect on the human body and may be a potential functional sugar stuff.


Assuntos
Dissacarídeos/química , Proteínas de Escherichia coli/química , Escherichia coli/enzimologia , Glicosídeo Hidrolases/química , Oligossacarídeos de Cadeias Ramificadas/síntese química , Glicosilação , Humanos , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/farmacologia
18.
Artigo em Inglês | MEDLINE | ID: mdl-20082600

RESUMO

Beta-galactosidase of Aspergillus sp. AF crude homogenate was immobilized in Ca-alginate gel beads and used for the production of galactooligosaccharides (GOS) from lactose. Optimum pH and temperature, thermal and storage stability of the enzyme activity were investigated and compared with those of the free enzyme. The study on the improvement of mechanical strength of the alginate beads was carried out through various methods, which demonstrates that the hardening process, where the alginate beads were treated with 0.225 M CaCl(2) solution after three batches to compensate the lost of calcium in the beads, provided a high mechanical stability for repeated use in large-scale production. The experiment results show that GOS yield increased with the increase of lactose concentration, and also increased with excessive addition of lactose (exceeding its solubility) at the beginning of the reaction. The immobilization of beta-galactosidase of Aspergillus sp. AF crude homogenate is cheap in processing cost and easy to carry out, and the immobilized enzyme possesses high performance for industrial application.


Assuntos
Aspergillus/enzimologia , Enzimas Imobilizadas/metabolismo , Proteínas Fúngicas/metabolismo , beta-Galactosidase/metabolismo , Alginatos , Cloreto de Cálcio/química , Cloreto de Cálcio/metabolismo , Misturas Complexas , Estabilidade Enzimática , Ácido Glucurônico , Ácidos Hexurônicos , Concentração de Íons de Hidrogênio , Microbiologia Industrial/métodos , Lactose/química , Lactose/metabolismo , Microesferas , Oligossacarídeos de Cadeias Ramificadas/química , Oligossacarídeos de Cadeias Ramificadas/metabolismo , Temperatura
19.
J Biotechnol ; 137(1-4): 34-43, 2008 Oct 10.
Artigo em Inglês | MEDLINE | ID: mdl-18680769

RESUMO

When grown on beech-wood glucuronoxylan, two strains of the thermophilic fungus Thermomyces lanuginosius, IMI 84400 and IMI 96213, secreted endo-beta-1,4-xylanase of glycoside hydrolase family 11 and simultaneously accumulated an acidic pentasaccharide in the medium. The aldopentaouronic acid was purified and its structure was established by a combination of NMR spectroscopy and enzyme digestion with glycosidases as MeGlcA(3)Xyl(4). Both strains showed limited growth on wheat arabinoxylan as a carbon source. An essential part of the polysaccharide was not utilized, and it was converted to a series of arabinoxylooligosaccharides differing in the degree of polymerization. The structure of the shorter arabinoxylooligosaccharides remaining in the wheat arabinoxylan-spent medium was established using mass spectrometry and digestion with glycosidases. Xylose and linear beta-1,4-xylooligosaccharides generated extracellularly during growth on either hardwood or cereal xylan were efficiently taken up by the cells and metabolized intracellularly. The data suggest that due to a lack of extracellular beta-xylosidase, alpha-glucuronidase, and alpha-l-arabinofuranosidase, the widely used T. lanuginosus strains might become efficient producers of branched xylooligosaccharides from both types of xylans.


Assuntos
Ascomicetos/metabolismo , Endo-1,4-beta-Xilanases/biossíntese , Oligossacarídeos de Cadeias Ramificadas/biossíntese , Ascomicetos/enzimologia , Cromatografia em Camada Fina , Glicosídeo Hidrolases/metabolismo , Oligossacarídeos de Cadeias Ramificadas/química , Triticum/metabolismo , Xilanos/metabolismo
20.
Carbohydr Res ; 343(8): 1333-45, 2008 Jun 09.
Artigo em Inglês | MEDLINE | ID: mdl-18395704

RESUMO

The assignment of (1)H and (13)C NMR signals of a complex type triantennary asialooligosaccharide was examined using 2D selective-TOCSY-DQFCOSY and HSQC-TOCSY experiments. The 2D selective-TOCSY-DQFCOSY experiment exhibits a 2D DQFCOSY spectrum of an individual monosaccharide in the undecasaccharide, although the NMR signals of several monosaccharides in the triantennary undecasaccharide are heavily overlapped. Selective excitation of each anomeric proton signal and subsequent TOCSY experiment afforded transverse magnetization corresponding to all of the proton signals of the monosaccharide. This magnetization was then developed with the corresponding DQFCOSY pulse sequence to afford the DQFCOSY spectrum of the individual monosugars. In this case, four GlcNAc-b, -e, -j, and -h residues were excited as a mixture. In order to assign (13)C signals, a conventional 2D HSQC-TOCSY spectrum was examined and compared with an unambiguous assignment of 2D selective-TOCSY-DQFCOSY thus obtained. This systematic analysis made it possible to obtain an assignment of the (1)H and (13)C NMR signals of the triantennary undecasaccharide. In addition, these experiments also revealed all of the glycosyl positions in the triantennary undecasaccharide.


Assuntos
Asparagina/química , Espectroscopia de Ressonância Magnética , Oligossacarídeos de Cadeias Ramificadas/química , Acetilglucosamina/química , Configuração de Carboidratos , Sequência de Carboidratos , Galactose/química , Manose/química , Manosídeos/química , Dados de Sequência Molecular , alfa-Fetoproteínas/química
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